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Gene: Zfp612 (zinc finger protein 612) Rattus norvegicus

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Symbol:

Zfp612

Name:

zinc finger protein 612

RGD ID:

1307197

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF23 (zinc finger protein 23); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC108353194; LOC307839; uncharacterized LOC108353194; Zfp23; zinc finger protein 23; zinc finger protein 23 (KOX 16); Znf23

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF23 (zinc finger protein 23)	HGNC	EggNOG, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zfp612 (zinc finger protein 612)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf23 (zinc finger protein 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF23 (zinc finger protein 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF23 (zinc finger protein 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf23 (zinc finger protein 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF23 (zinc finger protein 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF23 (zinc finger protein 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf23 (zinc finger protein 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf23 (zinc finger protein 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ADAM7 (ADAM metallopeptidase domain 7)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZNF23 (zinc finger protein 23)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF23 (zinc finger protein 23)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp612 (zinc finger protein 612)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp612 (zinc finger protein 612)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	crol	Alliance	DIOPT (OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y55F3AM.14	Alliance	DIOPT (Hieranoid\|InParanoid\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC101733951	Alliance	DIOPT (Ensembl Compara\|OMA)
Xenopus tropicalis (tropical clawed frog):	LOC116411639	Alliance	DIOPT (OMA\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	54,963,379 - 54,977,075 (+)	Ensembl				GRCr8
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	38,053,967 - 38,067,455 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	44,860,375 - 44,873,845 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	45,513,729 - 45,527,199 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	47,823,324 - 47,836,794 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	41,556,907 - 41,570,352 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	41,559,487 - 41,567,013 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	52,384,460 - 52,398,149 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	39,961,602 - 39,975,049 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	37,451,827 - 37,465,266 (+)	NCBI		Celera
RGSC_v3.1	19	39,966,434 - 39,977,350 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hepatocellular carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bortezomib (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fonofos (ISO)

gallic acid (ISO)

geraniol (ISO)

indometacin (ISO)

methapyrilene (EXP)

methotrexate (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

sulforaphane (ISO)

temozolomide (ISO)

terbufos (ISO)

tetrachloromethane (EXP,ISO)

thiram (ISO)

titanium dioxide (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zfp612
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	54,963,379 - 54,977,075 (+)	Ensembl				GRCr8
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	38,053,967 - 38,067,455 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	44,860,375 - 44,873,845 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	45,513,729 - 45,527,199 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	47,823,324 - 47,836,794 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	41,556,907 - 41,570,352 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	41,559,487 - 41,567,013 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	52,384,460 - 52,398,149 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	39,961,602 - 39,975,049 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	37,451,827 - 37,465,266 (+)	NCBI		Celera
RGSC_v3.1	19	39,966,434 - 39,977,350 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

ZNF23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	71,447,597 - 71,462,247 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	71,447,597 - 71,463,095 (-)	Ensembl			hg38	GRCh38
GRCh37	16	71,481,500 - 71,496,150 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	70,039,001 - 70,053,618 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	70,039,000 - 70,053,618	NCBI
Celera	16	55,797,355 - 55,811,972 (-)	NCBI		Celera
Cytogenetic Map	16	q22.2	NCBI
HuRef	16	57,249,546 - 57,264,163 (-)	NCBI		HuRef
CHM1_1	16	72,894,355 - 72,908,972 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	77,264,821 - 77,279,471 (-)	NCBI		T2T-CHM13v2.0

Zfp612
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	110,806,331 - 110,819,385 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	110,806,378 - 110,819,373 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	110,079,705 - 110,092,753 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	110,079,746 - 110,092,741 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	112,603,634 - 112,616,652 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	112,968,891 - 112,979,325 (+)	NCBI		MGSCv36	mm8
Celera	8	114,301,904 - 114,315,055 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	57.41	NCBI

Znf23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	4,161,259 - 4,170,157 (-)	Ensembl
ChiLan1.0	NW_004955484	4,162,454 - 4,174,816 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	82,697,257 - 82,711,980 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	88,630,747 - 88,645,541 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	53,548,640 - 53,563,433 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	71,284,708 - 71,299,436 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	71,284,714 - 71,299,418 (-)	Ensembl			panPan2	panpan1.1

ZNF23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	77,246,374 - 77,260,761 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	77,246,667 - 77,260,350 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	77,208,288 - 77,222,683 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	77,685,240 - 77,699,637 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	77,685,249 - 77,699,563 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	77,505,663 - 77,519,927 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	77,328,758 - 77,343,156 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	77,827,669 - 77,842,064 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	37,295,771 - 37,326,195 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	22,272,514 - 22,293,278 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	22,283,924 - 22,293,074 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	14,463,304 - 14,480,863 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	14,463,135 - 14,480,783 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZNF23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	54,578,420 - 54,609,302 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666047	17,386,913 - 17,417,906 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	13,633,902 - 13,639,348 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	13,633,182 - 13,676,121 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf23
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	29,785,785 - 29,799,336 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp612
79 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	499
Count of miRNA genes:	272
Interacting mature miRNAs:	337
Transcripts:	ENSRNOT00000022757
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

RH130552

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	38,067,129 - 38,067,312 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	41,557,050 - 41,557,232	NCBI	Rnor6.0
Rnor_5.0	19	52,384,847 - 52,385,029	UniSTS	Rnor5.0
RGSC_v3.4	19	39,974,724 - 39,974,906	UniSTS	RGSC3.4
Celera	19	37,464,941 - 37,465,123	UniSTS
RH 3.4 Map	19	446.3	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH143883

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	54,964,786 - 54,964,942 (+)	Marker Load Pipeline
mRatBN7.2	19	38,055,353 - 38,055,509 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	41,577,003 - 41,577,158	NCBI	Rnor6.0
Rnor_6.0	19	41,568,853 - 41,569,008	NCBI	Rnor6.0
Rnor_5.0	19	52,396,650 - 52,396,805	UniSTS	Rnor5.0
Rnor_5.0	19	52,401,610 - 52,401,765	UniSTS	Rnor5.0
RGSC_v3.4	19	39,962,946 - 39,963,101	UniSTS	RGSC3.4
Celera	19	37,453,171 - 37,453,326	UniSTS
RH 3.4 Map	19	454.5	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH144678

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	38,059,767 - 38,059,959 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	41,564,403 - 41,564,594	NCBI	Rnor6.0
Rnor_5.0	19	52,392,200 - 52,392,391	UniSTS	Rnor5.0
RGSC_v3.4	19	39,967,362 - 39,967,553	UniSTS	RGSC3.4
Celera	19	37,457,579 - 37,457,770	UniSTS
RH 3.4 Map	19	454.3	UniSTS
Cytogenetic Map	19	q12	UniSTS

BI281026

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	38,059,711 - 38,059,874 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	41,564,488 - 41,564,650	NCBI	Rnor6.0
Rnor_5.0	19	52,392,285 - 52,392,447	UniSTS	Rnor5.0
RGSC_v3.4	19	39,967,306 - 39,967,468	UniSTS	RGSC3.4
Celera	19	37,457,523 - 37,457,685	UniSTS
RH 3.4 Map	19	454.3	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	86	59	6	350	186	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022757 ⟹ ENSRNOP00000022757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	54,963,379 - 54,977,075 (+)	Ensembl
mRatBN7.2 Ensembl	19	38,053,967 - 38,067,455 (+)	Ensembl
Rnor_6.0 Ensembl	19	41,559,487 - 41,567,013 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112604 ⟹ ENSRNOP00000092179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	38,054,039 - 38,067,455 (+)	Ensembl

RefSeq Acc Id:

NM_001107428 ⟹ NP_001100898

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,963,443 - 54,976,888 (+)	NCBI
mRatBN7.2	19	38,054,010 - 38,067,455 (+)	NCBI
Rnor_6.0	19	41,556,907 - 41,570,352 (-)	NCBI
Rnor_5.0	19	52,384,460 - 52,398,149 (-)	NCBI
RGSC_v3.4	19	39,961,602 - 39,975,049 (+)	RGD
Celera	19	37,451,827 - 37,465,266 (+)	RGD

Sequence:

show sequence

CGTTGCGGTTCGCGGTGTCCTGGCGGTCAGCACGCAGGGTCCCTCGCAGCCAGCCTCGCGGCCC
ACCACGTCTCGGTGCCCACAGCGGTGACGCTTGAGTGGCAACTACCGTCAGGCCCACAGAGCTT
AGCAGGTGGCGGATCGGGGAAGCTGTGTCACTTCACAGAGGGTGACTGCGTGAGGGGGCGAAGC
GGCTCGAGGTGACATCGCAAGTCCATTGACCCGCTGTGGTCCTGCAGGTGCTTCAGCTCCAGTC
TTTCCTTGAGAGGGAGACCAGGTGATGACAGCCATGATCCCATCGGTTTGGCCCCAGAAGTCGG
TGACCTTTGAGGATGTGGCTGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACA
GAGAGCATTGTACAGGGATGTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGGGATTTCCA
CTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAAGGAGAGGATCTGGAAAGCCTGTCTCAGC
TGGCCACTGGAACAGACTCCCAGGGCCTCTGGACTGAATGTACTGCTATCCAGACTGGCATTAA
TTTGACAAAAGACGTGTATGAAGAGAAAAAGAATACATTATTTGAACTTCAGAAGGACTTTTCT
CAGGAAACACACTTTTCAAAAACTTATATTGTTGGCCAACAGCAGGAAACGCAGTCAGCAGGAA
GTGAGAGGGAGAGTGTCAGCGCCTCCAATGGAAGAGCTAAGACAAGCCCCGTGGAAGGGCATTT
ACCTAGTCCCATGCCACACTTGTCTCAGGACCATGCCAGCTCTGCTGGAGAGCAGTACTCTGAC
ACCAAACTTACTAAGAATGAGAAAATTACTGCACAGGAAACACCTTTGAAACACAAAGAATTAG
CAGAGGCTTCTCAGGGTAGCTCTCAAGTTAATCAGCTTCCAGAAAGCTGTGATGTGGAGAAGCC
CTATCAGTGTACAGAATGTGGCAAAGCCTTCAGTGTTAAAGCCAAGTTTGTTTGGCATCAAAGA
CTTCATAATGGAGAGAAACCTTTCAAATGTGTGGAGTGTGGGAAATGCTTTAGCTACAGTTCAC
ACTATATCACACATCAGACAATCCACAGTGGAGAAAAGCCGTACCAGTGTAAGGTGTGTGGCAA
AGCCTTCAGTGTTAACGGAAGTCTCGTTAGACATCAGAGGATACACACAGGAGAGAAGCCCTAT
CAGTGCAAGGAGTGTGGGACTGGCTTCGGTTGTAGTTCTGCATACATTACTCACCAGAGAACCC
ACACTGGGGAGAAACCTTACGAGTGCAGTGACTGTGGGAAAGCTTTCAATGTTAACGCCAAATT
GATTCAGCATCAAAGAATCCATACTGGAGAGAAGCCTTATGAATGTGATGTGTGCGGAAAGGGC
TTCAGGTGCAGCACCCAGCTTAGGCAGCATCAGAGTATACACACTGGAGAGAAGCCGCATCGCT
GTAGTGAGTGTGGGAAAGGCTTCACTAAAAATGCAAAGCTCATTCAACACCAAAGAGTGCACAC
GGGTGAGAAACCCTATGCGTGCAGTGACTGTGGAAAGACTTTTAGTGCCAAAGGGAAGTTAATC
CAGCACCAGAGAATCCACACAGGTGAGAGACCTTATGAATGTAGTGAGTGTGGGAAATCCTTTA
GGTGTAACTCCCAGCTTCGGCAGCATCTGAGAATCCATACTGGGGAGAAGCCATATAAATGCAA
TGAGTGTGGAAAGGCCTTCAACGTTAATGCAAAGCTAATGCAGCACCGGAGAACTCACACTGGG
GAGAAGCCGTTTGAATGCAATGAATGTGGGAAGTGCTTTACATCTAAAAGGAACCTGCTTGATC
ACCAGCGAACCCATACTGGAGAGAAGCCATATCAGTGTAAGGAGTGTGGGAAAGCTTTCAGTAT
CAATGCGAAGTTAACTAGACATCAGCAAATACACACCAGGGAGAAACCTTTCAAGTGTATGGAA
TGTGAGAAAGCATTCAGCTGTAGTTCTGACTATATTGTGCATCAGAGAATCCATACTGGAGAGA
AACCCTTTCAGTGCAGCGAGTGTGGTAAAGCCTTCCATGTCAATGCTCATTTAATTAGACACCA
GAGAAGCCATACTGGGGAAAAGCCTTTCCGATGCATGGAGTGTGGCAAGGGCTTCAGCCTTAGT
TCTGATTGTATTATACATCAGACTGTCCATACTTGGAAGAAACCCTATGTATGTAACATATGTG
GGAAAACTTTCAGGTTTAGCTTCCAACTTAGTCAGCACCAAGATGTTCACAATGAAGACAAATC
CTAATGAAGACAAAAACAAAACTAAACAAGCAAGCAAAACCCTAAAACCAGACCTATGTTTAAT
AAGAAGGGGATCATGGCTCATCAATTATTACTTGGAGGAAAACCATTAGAAGGAAATGAATATG
GCAGTCTTCACTCGAAAACAATTTTTCTCTTATTTTTAATCAAGATGAGCAGCTGGAAAGATAT
CTAAAATACTTTTTTTTAATGAATTTTTGTTTTGTGTTTCAAGATAGCGTTTCTCTGTGCAGCT
CTGGCTATCCTGGAACTCGCTGTGTAGACTGGTCAGGCCTCCAACTGAGATTCACCAGCCTCTG
CCTCCCGAGTACTGGTGTTAAAGGTGCGCCTCAGCACTGCCCAAATAATAACTTGATTTATCCA
GTATTAGTCAGGGAATATAATGAAGGGAAACATCCTATTCCCAGCAGCCTGAATCTACTTATCC
ACTTGATTTATCCAGTAACCAGTCAGGAAATATAATGAAGGGAAACATCCTATTCCCAGCAGCA
CCATAAAAAGTAGATTTTCTAGGAAAATTTTCTGGGGCTGAAGAAAATTAAGGATTCTCAACTG
AGGGAGACTAAAGAAAACAAATACAAGAAGGAGGAGAGAAATTAATGTATTTCTGCTTCGTTTT
GACAACAAGAATGCATTACACATCCTTTAAAATGGGGGAAAGTAAACATTAAAAAATTGTTAGA
AGAAGCCTTTAAAAACATCAGATCCAAAATAGAGATGAACACTAAAGAGAGTGTTGGCAAATGA
CCACTCTAAACCCGTGTGTTTTGTTGTAAATACTTCCAAATAAGTTTGAGTTGTAAAGCACAGA
CACACACACACACACACACACACTCAAATGGAATGACCTTTGTAAAATTTGTGATATAGTGTAA
TATCTAGTACTCAGATTTTAACAAAAGATAAAAATCAACAGTGACATTAACAGTGCTTTCGGAT
CACCAGTGTTCTAAAGAAGTGTCCCTTCTCAGTACCCCAAGGGGTAGAAATTAGTGAAGACTTG
CATGTCACATTGAGTATATGATATGCATTACCCCTCCCCCAATACTCTGCAGCCCTCAGTGATT
GTAGGTGCTATATTTGCTACAGATGCCTGCCATACAAGCACAAATTATATTAACAAAATAGCAT
GTTAGAGTTCCTATTTTGTAGTGACTGAACTCAGCAAACATGACTATGCCCTGAAGAAAGGTAT
CTGCATTGACTTCGATGCTTTGTGATAATTGGGCTCCATGAAAATGTTGGAATTCTTAAGATAC
TTTTTGAAATCTCTTTCCCCCTTTTAAAACAAAAACCAAAACAAAACACTGTAAGCCATTAATA
AGATCACTTGAGCTGCCAAAAAGCTGACAATCAGCAGTTATTTCTCTGTTGTCAACTGGTAATG
GGTAAGAAAGGAAAAGGTTTCCTACTTAACAACACCTCTAGTACCAAACATTCAGGTTTCCACA
CCAATTTAGTTGTTTGCAGACACCAACTGGATGTCCTCCAATTTCTATCAATTTTGCCATAATA
AACATCCTACTGGTGAAGTGGGCTCAGTCTGAGAAGACTGCCAGTCTCCTCCCCCTATATTCAG
ACACTAATGATGAGTCCTACATTACTGATTTGGTTACAAATTGAACCCTCTGGGTTCAGTAATT
TTCTATGGTAACTCATCAAACTTAAAGAGACAATTTAAAGTTACCATTTACTCTAAATTATATC
GTGAATGTCACAGGAGCAGCCAGATGAAGAGATGAACAAGATCCAAAGGGTTCCCCATGTGAAG
GTGTGTTTGTCCCCAGAGTCGAGTGCTTCACCTGTTGAGCCTTGCTGTTTAGTGTTTGTATGAA
GATTACAGTGCGTGCCCATGACTGATGAAGGCCTTGGCTGTTAGATAGGTTTCCCCTTCCAGAA
GTCAGCAGGGGTTGTTAAAAGTTCCAACTCTCTTAGCACATAGTTGGCTCCTTTGACAACTAGC
CCCAATCCTGGAGCTAGCAAGGAGTCTAGCGACAAGTCGCTTTAGCATAAACAGATGACGGCAA
GAGACCTTAGGAGTAACAAAAGGTTTTAGGTTTTCTTTGTGTGTGTGGTGCTGGAAACTGGAGA
GAGACCAAACATGCTTAAGTCACAGGCAAAAACCCATTTACTTGGTTCAAATCCCCTTAAGTCT
GGGGAATTTTGGGTTTGTTTGTCTTTAGTTCAGTAGTAAATAGGATAAAATGAAAACCCAGCTC
TGGGGAAGCCATTAGCTCTAGGAGCAAAGATGAACCCTGGGCAGTGTAGACTATTAGTGCTTTT
CCATATAGCAGTTCTTTCCAAAATGTCTTCATTTAAGAGTTGTGTAATGGCTAGTGACATGGCT
CACAGGTAAAGGCTAAACTCGACCCAAGTTTCAATCTCTAGAGCCCACATGATGGGAAGGACAG
ATTGACACACAGTTGTCCTCTGGCCTCTGTGCATGCATGAAAATAATAATGTCATTTAAAAAAA
ACCTAAAATACCTATACTGAAATTAAGCATATTGATCATCTTGAAGTGTGCAATTCGTCTATTC
AAATAAATCTAATAATCTGCTGAA

hide sequence

RefSeq Acc Id:

XM_006255588 ⟹ XP_006255650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI
Rnor_6.0	19	41,556,907 - 41,570,346 (-)	NCBI
Rnor_5.0	19	52,384,460 - 52,398,149 (-)	NCBI

Sequence:

show sequence

GGTTCGCGGTGTCCTGGCGGTCAGCACGCAGGGTCCCTCGCAGCCAGCCTCGCGGCCCACCACG
TCTCGGTGCCCACAGCGGTGACGCTTGAGTGGCAACTACCGTCAGGCCCACAGAGCTTAGCAGG
TGGCGGATCGGGGAAGCTGTGTCACTTCACAGAGGGTGACTGCGTGAGGGGGCGAAGCGGCTCG
AGGTGACATCGCAAGTCCATTGACCCGCTGTGGTCCTGCAGGTGCTTCAGGGTCTCTGAGGAGC
CTTGGAATCTCAAAGATGTCCTTCTAGGGTTAATGGGAAAAGCACTTACCTATCAAATTCTGCC
CCCTGATGGTCAAGGGTGGCCTCACAGATGCTTTTGTGCCTGCAGTCTGCCGCAGCGGGCATCT
CACTCAGAATATGGGAGAAGCCGGACTGCAGGAATGAGCTCCAGTCTTTCCTTGAGAGGGAGAC
CAGGTGATGACAGCCATGATCCCATCGGTTTGGCCCCAGAAGTCGGTGACCTTTGAGGATGTGG
CTGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACAGAGAGCATTGTACAGGGA
TGTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGGGATTTCCACTTCTCAAACCTGCTGTG
ATCTCACAGCTAGAGGAAGGAGAGGATCTGGAAAGCCTGTCTCAGCTGGCCACTGGAACAGACT
CCCAGGGCCTCTGGACTGAATGTACTGCTATCCAGACTGGCATTAATTTGACAAAAGACGTGTA
TGAAGAGAAAAAGAATACATTATTTGAACTTCAGAAGGACTTTTCTCAGGAAACACACTTTTCA
AAAACTTATATTGTTGGCCAACAGCAGGAAACGCAGTCAGCAGGAAGTGAGAGGGAGAGTGTCA
GCGCCTCCAATGGAAGAGCTAAGACAAGCCCCGTGGAAGGGCATTTACCTAGTCCCATGCCACA
CTTGTCTCAGGACCATGCCAGCTCTGCTGGAGAGCAGTACTCTGACACCAAACTTACTAAGAAT
GAGAAAATTACTGCACAGGAAACACCTTTGAAACACAAAGAATTAGCAGAGGCTTCTCAGGGTA
GCTCTCAAGTTAATCAGCTTCCAGAAAGCTGTGATGTGGAGAAGCCCTATCAGTGTACAGAATG
TGGCAAAGCCTTCAGTGTTAAAGCCAAGTTTGTTTGGCATCAAAGACTTCATAATGGAGAGAAA
CCTTTCAAATGTGTGGAGTGTGGGAAATGCTTTAGCTACAGTTCACACTATATCACACATCAGA
CAATCCACAGTGGAGAAAAGCCGTACCAGTGTAAGGTGTGTGGCAAAGCCTTCAGTGTTAACGG
AAGTCTCGTTAGACATCAGAGGATACACACAGGAGAGAAGCCCTATCAGTGCAAGGAGTGTGGG
ACTGGCTTCGGTTGTAGTTCTGCATACATTACTCACCAGAGAACCCACACTGGGGAGAAACCTT
ACGAGTGCAGTGACTGTGGGAAAGCTTTCAATGTTAACGCCAAATTGATTCAGCATCAAAGAAT
CCATACTGGAGAGAAGCCTTATGAATGTGATGTGTGCGGAAAGGGCTTCAGGTGCAGCACCCAG
CTTAGGCAGCATCAGAGTATACACACTGGAGAGAAGCCGCATCGCTGTAGTGAGTGTGGGAAAG
GCTTCACTAAAAATGCAAAGCTCATTCAACACCAAAGAGTGCACACGGGTGAGAAACCCTATGC
GTGCAGTGACTGTGGAAAGACTTTTAGTGCCAAAGGGAAGTTAATCCAGCACCAGAGAATCCAC
ACAGGTGAGAGACCTTATGAATGTAGTGAGTGTGGGAAATCCTTTAGGTGTAACTCCCAGCTTC
GGCAGCATCTGAGAATCCATACTGGGGAGAAGCCATATAAATGCAATGAGTGTGGAAAGGCCTT
CAACGTTAATGCAAAGCTAATGCAGCACCGGAGAACTCACACTGGGGAGAAGCCGTTTGAATGC
AATGAATGTGGGAAGTGCTTTACATCTAAAAGGAACCTGCTTGATCACCAGCGAACCCATACTG
GAGAGAAGCCATATCAGTGTAAGGAGTGTGGGAAAGCTTTCAGTATCAATGCGAAGTTAACTAG
ACATCAGCAAATACACACCAGGGAGAAACCTTTCAAGTGTATGGAATGTGAGAAAGCATTCAGC
TGTAGTTCTGACTATATTGTGCATCAGAGAATCCATACTGGAGAGAAACCCTTTCAGTGCAGCG
AGTGTGGTAAAGCCTTCCATGTCAATGCTCATTTAATTAGACACCAGAGAAGCCATACTGGGGA
AAAGCCTTTCCGATGCATGGAGTGTGGCAAGGGCTTCAGCCTTAGTTCTGATTGTATTATACAT
CAGACTGTCCATACTTGGAAGAAACCCTATGTATGTAACATATGTGGGAAAACTTTCAGGTTTA
GCTTCCAACTTAGTCAGCACCAAGATGTTCACAATGAAGACAAATCCTAATGAAGACAAAAACA
AAACTAAACAAGCAAGCAAAACCCTAAAACCAGACCTATGTTTAATAAGAAGGGGATCATGGCT
CATCAATTATTACTTGGAGGAAAACCATTAGAAGGAAATGAATATGGCAGTCTTCACTCGAAAA
CAATTTTTCTCTTATTTTTAATCAAGATGAGCAGCTGGAAAGATATCTAAAATACTTTTTTTTA
ATGAATTTTTGTTTTGTGTTTCAAGATAGCGTTTCTCTGTGCAGCTCTGGCTATCCTGGAACTC
GCTGTGTAGACTGGTCAGGCCTCCAACTGAGATTCACCAGCCTCTGCCTCCCGAGTACTGGTGT
TAAAGGTGCGCCTCAGCACTGCCCAAATAATAACTTGATTTATCCAGTATTAGTCAGGGAATAT
AATGAAGGGAAACATCCTATTCCCAGCAGCCTGAATCTACTTATCCACTTGATTTATCCAGTAA
CCAGTCAGGAAATATAATGAAGGGAAACATCCTATTCCCAGCAGCACCATAAAAAGTAGATTTT
CTAGGAAAATTTTCTGGGGCTGAAGAAAATTAAGGATTCTCAACTGAGGGAGACTAAAGAAAAC
AAATACAAGAAGGAGGAGAGAAATTAATGTATTTCTGCTTCGTTTTGACAACAAGAATGCATTA
CACATCCTTTAAAATGGGGGAAAGTAAACATTAAAAAATTGTTAGAAGAAGCCTTTAAAAACAT
CAGATCCAAAATAGAGATGAACACTAAAGAGAGTGTTGGCAAATGACCACTCTAAACCCGTGTG
TTTTGTTGTAAATACTTCCAAATAAGTTTGAGTTGTAAAGCACAGACACACACACACACACACA
CACACTCAAATGGAATGACCTTTGTAAAATTTGTGATATAGTGTAATATCTAGTACTCAGATTT
TAACAAAAGATAAAAATCAACAGTGACATTAACAGTGCTTTCGGATCACCAGTGTTCTAAAGAA
GTGTCCCTTCTCAGTACCCCAAGGGGTAGAAATTAGTGAAGACTTGCATGTCACATTGAGTATA
TGATATGCATTACCCCTCCCCCAATACTCTGCAGCCCTCAGTGATTGTAGGTGCTATATTTGCT
ACAGATGCCTGCCATACAAGCACAAATTATATTAACAAAATAGCATGTTAGAGTTCCTATTTTG
TAGTGACTGAACTCAGCAAACATGACTATGCCCTGAAGAAAGGTATCTGCATTGACTTCGATGC
TTTGTGATAATTGGGCTCCATGAAAATGTTGGAATTCTTAAGATACTTTTTGAAATCTCTTTCC
CCCTTTTAAAACAAAAACCAAAACAAAACACTGTAAGCCATTAATAAGATCACTTGAGCTGCCA
AAAAGCTGACAATCAGCAGTTATTTCTCTGTTGTCAACTGGTAATGGGTAAGAAAGGAAAAGGT
TTCCTACTTAACAACACCTCTAGTACCAAACATTCAGGTTTCCACACCAATTTAGTTGTTTGCA
GACACCAACTGGATGTCCTCCAATTTCTATCAATTTTGCCATAATAAACATCCTACTGGTGAAG
TGGGCTCAGTCTGAGAAGACTGCCAGTCTCCTCCCCCTATATTCAGACACTAATGATGAGTCCT
ACATTACTGATTTGGTTACAAATTGAACCCTCTGGGTTCAGTAATTTTCTATGGTAACTCATCA
AACTTAAAGAGACAATTTAAAGTTACCATTTACTCTAAATTATATCGTGAATGTCACAGGAGCA
GCCAGATGAAGAGATGAACAAGATCCAAAGGGTTCCCCATGTGAAGGTGTGTTTGTCCCCAGAG
TCGAGTGCTTCACCTGTTGAGCCTTGCTGTTTAGTGTTTGTATGAAGATTACAGTGCGTGCCCA
TGACTGATGAAGGCCTTGGCTGTTAGATAGGTTTCCCCTTCCAGAAGTCAGCAGGGGTTGTTAA
AAGTTCCAACTCTCTTAGCACATAGTTGGCTCCTTTGACAACTAGCCCCAATCCTGGAGCTAGC
AAGGAGTCTAGCGACAAGTCGCTTTAGCATAAACAGATGACGGCAAGAGACCTTAGGAGTAACA
AAAGGTTTTAGGTTTTCTTTGTGTGTGTGGTGCTGGAAACTGGAGAGAGACCAAACATGCTTAA
GTCACAGGCAAAAACCCATTTACTTGGTTCAAATCCCCTTAAGTCTGGGGAATTTTGGGTTTGT
TTGTCTTTAGTTCAGTAGTAAATAGGATAAAATGAAAACCCAGCTCTGGGGAAGCCATTAGCTC
TAGGAGCAAAGATGAACCCTGGGCAGTGTAGACTATTAGTGCTTTTCCATATAGCAGTTCTTTC
CAAAATGTCTTCATTTAAGAGTTGTGTAATGGCTAGTGACATGGCTCACAGGTAAAGGCTAAAC
TCGACCCAAGTTTCAATCTCTAGAGCCCACATGATGGGAAGGACAGATTGACACACAGTTGTCC
TCTGGCCTCTGTGCATGCATGAAAATAATAATGTCATTTAAAAAAAACCTAAAATACCTATACT
GAAATTAAGCATATTGATCATCTTGAAGTGTGCAATTCGTCTATTCAAATAAATCTAATAATCT
GCTGAA

hide sequence

RefSeq Acc Id:

XM_006255589 ⟹ XP_006255651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI
Rnor_6.0	19	41,556,907 - 41,570,346 (-)	NCBI
Rnor_5.0	19	52,384,460 - 52,398,149 (-)	NCBI

Sequence:

show sequence

GGTTCGCGGTGTCCTGGCGGTCAGCACGCAGGGTCCCTCGCAGCCAGCCTCGCGGCCCACCACG
TCTCGGTGCCCACAGCGGTGACGCTTGAGTGGCAACTACCGTCAGGCCCACAGAGCTTAGCAGG
TGGCGGATCGGGGAAGCTGTGTCACTTCACAGAGGGTGACTGCGTGAGGGGGCGAAGCGGCTCG
AGGTGACATCGCAAGTCCATTGACCCGCTGTGGTCCTGCAGGTGCTTCAGTCTGCCGCAGCGGG
CATCTCACTCAGAATATGGGAGAAGCCGGACTGCAGGAATGAGCTCCAGTCTTTCCTTGAGAGG
GAGACCAGGTGATGACAGCCATGATCCCATCGGTTTGGCCCCAGAAGTCGGTGACCTTTGAGGA
TGTGGCTGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACAGAGAGCATTGTAC
AGGGATGTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGGGATTTCCACTTCTCAAACCTG
CTGTGATCTCACAGCTAGAGGAAGGAGAGGATCTGGAAAGCCTGTCTCAGCTGGCCACTGGAAC
AGACTCCCAGGGCCTCTGGACTGAATGTACTGCTATCCAGACTGGCATTAATTTGACAAAAGAC
GTGTATGAAGAGAAAAAGAATACATTATTTGAACTTCAGAAGGACTTTTCTCAGGAAACACACT
TTTCAAAAACTTATATTGTTGGCCAACAGCAGGAAACGCAGTCAGCAGGAAGTGAGAGGGAGAG
TGTCAGCGCCTCCAATGGAAGAGCTAAGACAAGCCCCGTGGAAGGGCATTTACCTAGTCCCATG
CCACACTTGTCTCAGGACCATGCCAGCTCTGCTGGAGAGCAGTACTCTGACACCAAACTTACTA
AGAATGAGAAAATTACTGCACAGGAAACACCTTTGAAACACAAAGAATTAGCAGAGGCTTCTCA
GGGTAGCTCTCAAGTTAATCAGCTTCCAGAAAGCTGTGATGTGGAGAAGCCCTATCAGTGTACA
GAATGTGGCAAAGCCTTCAGTGTTAAAGCCAAGTTTGTTTGGCATCAAAGACTTCATAATGGAG
AGAAACCTTTCAAATGTGTGGAGTGTGGGAAATGCTTTAGCTACAGTTCACACTATATCACACA
TCAGACAATCCACAGTGGAGAAAAGCCGTACCAGTGTAAGGTGTGTGGCAAAGCCTTCAGTGTT
AACGGAAGTCTCGTTAGACATCAGAGGATACACACAGGAGAGAAGCCCTATCAGTGCAAGGAGT
GTGGGACTGGCTTCGGTTGTAGTTCTGCATACATTACTCACCAGAGAACCCACACTGGGGAGAA
ACCTTACGAGTGCAGTGACTGTGGGAAAGCTTTCAATGTTAACGCCAAATTGATTCAGCATCAA
AGAATCCATACTGGAGAGAAGCCTTATGAATGTGATGTGTGCGGAAAGGGCTTCAGGTGCAGCA
CCCAGCTTAGGCAGCATCAGAGTATACACACTGGAGAGAAGCCGCATCGCTGTAGTGAGTGTGG
GAAAGGCTTCACTAAAAATGCAAAGCTCATTCAACACCAAAGAGTGCACACGGGTGAGAAACCC
TATGCGTGCAGTGACTGTGGAAAGACTTTTAGTGCCAAAGGGAAGTTAATCCAGCACCAGAGAA
TCCACACAGGTGAGAGACCTTATGAATGTAGTGAGTGTGGGAAATCCTTTAGGTGTAACTCCCA
GCTTCGGCAGCATCTGAGAATCCATACTGGGGAGAAGCCATATAAATGCAATGAGTGTGGAAAG
GCCTTCAACGTTAATGCAAAGCTAATGCAGCACCGGAGAACTCACACTGGGGAGAAGCCGTTTG
AATGCAATGAATGTGGGAAGTGCTTTACATCTAAAAGGAACCTGCTTGATCACCAGCGAACCCA
TACTGGAGAGAAGCCATATCAGTGTAAGGAGTGTGGGAAAGCTTTCAGTATCAATGCGAAGTTA
ACTAGACATCAGCAAATACACACCAGGGAGAAACCTTTCAAGTGTATGGAATGTGAGAAAGCAT
TCAGCTGTAGTTCTGACTATATTGTGCATCAGAGAATCCATACTGGAGAGAAACCCTTTCAGTG
CAGCGAGTGTGGTAAAGCCTTCCATGTCAATGCTCATTTAATTAGACACCAGAGAAGCCATACT
GGGGAAAAGCCTTTCCGATGCATGGAGTGTGGCAAGGGCTTCAGCCTTAGTTCTGATTGTATTA
TACATCAGACTGTCCATACTTGGAAGAAACCCTATGTATGTAACATATGTGGGAAAACTTTCAG
GTTTAGCTTCCAACTTAGTCAGCACCAAGATGTTCACAATGAAGACAAATCCTAATGAAGACAA
AAACAAAACTAAACAAGCAAGCAAAACCCTAAAACCAGACCTATGTTTAATAAGAAGGGGATCA
TGGCTCATCAATTATTACTTGGAGGAAAACCATTAGAAGGAAATGAATATGGCAGTCTTCACTC
GAAAACAATTTTTCTCTTATTTTTAATCAAGATGAGCAGCTGGAAAGATATCTAAAATACTTTT
TTTTAATGAATTTTTGTTTTGTGTTTCAAGATAGCGTTTCTCTGTGCAGCTCTGGCTATCCTGG
AACTCGCTGTGTAGACTGGTCAGGCCTCCAACTGAGATTCACCAGCCTCTGCCTCCCGAGTACT
GGTGTTAAAGGTGCGCCTCAGCACTGCCCAAATAATAACTTGATTTATCCAGTATTAGTCAGGG
AATATAATGAAGGGAAACATCCTATTCCCAGCAGCCTGAATCTACTTATCCACTTGATTTATCC
AGTAACCAGTCAGGAAATATAATGAAGGGAAACATCCTATTCCCAGCAGCACCATAAAAAGTAG
ATTTTCTAGGAAAATTTTCTGGGGCTGAAGAAAATTAAGGATTCTCAACTGAGGGAGACTAAAG
AAAACAAATACAAGAAGGAGGAGAGAAATTAATGTATTTCTGCTTCGTTTTGACAACAAGAATG
CATTACACATCCTTTAAAATGGGGGAAAGTAAACATTAAAAAATTGTTAGAAGAAGCCTTTAAA
AACATCAGATCCAAAATAGAGATGAACACTAAAGAGAGTGTTGGCAAATGACCACTCTAAACCC
GTGTGTTTTGTTGTAAATACTTCCAAATAAGTTTGAGTTGTAAAGCACAGACACACACACACAC
ACACACACACTCAAATGGAATGACCTTTGTAAAATTTGTGATATAGTGTAATATCTAGTACTCA
GATTTTAACAAAAGATAAAAATCAACAGTGACATTAACAGTGCTTTCGGATCACCAGTGTTCTA
AAGAAGTGTCCCTTCTCAGTACCCCAAGGGGTAGAAATTAGTGAAGACTTGCATGTCACATTGA
GTATATGATATGCATTACCCCTCCCCCAATACTCTGCAGCCCTCAGTGATTGTAGGTGCTATAT
TTGCTACAGATGCCTGCCATACAAGCACAAATTATATTAACAAAATAGCATGTTAGAGTTCCTA
TTTTGTAGTGACTGAACTCAGCAAACATGACTATGCCCTGAAGAAAGGTATCTGCATTGACTTC
GATGCTTTGTGATAATTGGGCTCCATGAAAATGTTGGAATTCTTAAGATACTTTTTGAAATCTC
TTTCCCCCTTTTAAAACAAAAACCAAAACAAAACACTGTAAGCCATTAATAAGATCACTTGAGC
TGCCAAAAAGCTGACAATCAGCAGTTATTTCTCTGTTGTCAACTGGTAATGGGTAAGAAAGGAA
AAGGTTTCCTACTTAACAACACCTCTAGTACCAAACATTCAGGTTTCCACACCAATTTAGTTGT
TTGCAGACACCAACTGGATGTCCTCCAATTTCTATCAATTTTGCCATAATAAACATCCTACTGG
TGAAGTGGGCTCAGTCTGAGAAGACTGCCAGTCTCCTCCCCCTATATTCAGACACTAATGATGA
GTCCTACATTACTGATTTGGTTACAAATTGAACCCTCTGGGTTCAGTAATTTTCTATGGTAACT
CATCAAACTTAAAGAGACAATTTAAAGTTACCATTTACTCTAAATTATATCGTGAATGTCACAG
GAGCAGCCAGATGAAGAGATGAACAAGATCCAAAGGGTTCCCCATGTGAAGGTGTGTTTGTCCC
CAGAGTCGAGTGCTTCACCTGTTGAGCCTTGCTGTTTAGTGTTTGTATGAAGATTACAGTGCGT
GCCCATGACTGATGAAGGCCTTGGCTGTTAGATAGGTTTCCCCTTCCAGAAGTCAGCAGGGGTT
GTTAAAAGTTCCAACTCTCTTAGCACATAGTTGGCTCCTTTGACAACTAGCCCCAATCCTGGAG
CTAGCAAGGAGTCTAGCGACAAGTCGCTTTAGCATAAACAGATGACGGCAAGAGACCTTAGGAG
TAACAAAAGGTTTTAGGTTTTCTTTGTGTGTGTGGTGCTGGAAACTGGAGAGAGACCAAACATG
CTTAAGTCACAGGCAAAAACCCATTTACTTGGTTCAAATCCCCTTAAGTCTGGGGAATTTTGGG
TTTGTTTGTCTTTAGTTCAGTAGTAAATAGGATAAAATGAAAACCCAGCTCTGGGGAAGCCATT
AGCTCTAGGAGCAAAGATGAACCCTGGGCAGTGTAGACTATTAGTGCTTTTCCATATAGCAGTT
CTTTCCAAAATGTCTTCATTTAAGAGTTGTGTAATGGCTAGTGACATGGCTCACAGGTAAAGGC
TAAACTCGACCCAAGTTTCAATCTCTAGAGCCCACATGATGGGAAGGACAGATTGACACACAGT
TGTCCTCTGGCCTCTGTGCATGCATGAAAATAATAATGTCATTTAAAAAAAACCTAAAATACCT
ATACTGAAATTAAGCATATTGATCATCTTGAAGTGTGCAATTCGTCTATTCAAATAAATCTAAT
AATCTGCTGAA

hide sequence

RefSeq Acc Id:

XM_017601293 ⟹ XP_017456782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,965,269 - 54,976,888 (+)	NCBI
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI
Rnor_6.0	19	41,556,907 - 41,570,346 (-)	NCBI

Sequence:

show sequence

GGTTCGCGGTGTCCTGGCGGTCAGCACGCAGGGTCCCTCGCAGCCAGCCTCGCGGCCCACCACG
TCTCGGTGCCCACAGCGGTGACGCTTGAGTGGCAACTACCGTCAGGCCCACAGAGCTTAGCAGG
TGGCGGATCGGGGAAGCTGTGTCACTTCACAGAGGGTGACTGCGTGAGGGGGCGAAGCGGCTCG
AGGTGACATCGCAAGTCCATTGACCCGCTGTGGTCCTGCAGGTGCTTCAGGTGTGTACAGCTTG
TCCTGAGCTCCAGACGGGGTGAGGGGCGCGGGGCACCGCAGGGCCACCTCTCAGCTACTGGGGA
CAGACGGCTTGAGGCCTGGTCTGCTGCATTGATGTCAGGCCCCACACATTCACACATGATTACG
ACACAGCATGAGTACAGACAGAATGTTTTAGGATTGATATTTCATACCCCGTAGAAGACAGTAC
GACATTTGGAATGCATGTAGGTCTCTTTGGTTATAGCCTTACCGAAGTCAAAACACTATTTTGA
CAAGAAGGGAGCTGGGAGGGACAGACAGACACAGAGAAAAAGTTTTAAGAGAAACAAAAGTAAC
AAATGCTTACCTATGAGCAGCCAGTTAAGAAAGAATCTGGTCCTTACTGCCGCATCCATTAGTA
TATCCCTTCTTCATCTGATGTCAAGACTCCCATCCTCAGAGGGATGTTTTGAACGTTGTGTTAA
TCACAGCCTATTTTTAAGTGTATCCATATGCACTGATACATAAACAGTTTAACCTTTCTGTGTT
GTTTTTGAGCATCTTCATGTACTAGGTTAATTTCTAAGGAGTGTATATGCCAGCTGGGTCATAT
ACAGCTCTAAAAACAATATGGGAACTTGTATTTTCAGTGGACGGTTAGGTTGTTTTCAGGCTGA
TTATGTACCAAAAATAGTACTGATGATTAATGTTTTGTCTCCTATACATGAGAATATTCAAAGG
AATACATTTTTTAAGTTTTTAAAAATTCATTGAGAGTTTCATACAAATATAGAATGCATTTGAT
TCATTTCACCCTTCTCCTGGGCACCCCCTTGCCAGACATTTTTAAAATTAGATGTGAGTATTGC
ATTTTTCAAACACCTTTGGCATCGAGGTGGACTATAAGTTGACTTGCTGTCTTCAAATTGAATT
ACATATTCTTCATTGTTGAATATGTTTTTTTAAATACCAAAGGATATTTTAAAGAAAAGATAGG
TATTAATCCCATACACAAAACAAAGCAAAGCAAAACTCTTAAAAAAAAAAAAACAAACTCTGTA
AAGAATAATAGATCAGGGCATTTAAACATACAGTAACGAACCCAGAGCTTATTAGTAGCAGAGT
GTGAGCAGCACCAATATATTTTAAAGTTATTACATCAGAGACAAGTCAGAGTTACTGAGCTCTA
AAATAGAAATTAAAATGTAGAACATGAGAACCTCTGAGCATTCTTGGTCGAGCATTCTGAGCCA
GAGGGAAATTTGTGGCCAGATAGTTTTTGATTACCAGATAGGACAATGAAAATAGCTGAAAAAC
TCCTGTAATTTGAAGAGGTAGAAAAATGTAAAATCCTTTTGTAGTCTAGGTTTTTCCAGCCATA
GAACATAGGACAAAGAGTTTTGTTTTGTTTGTTTGTTTGGTTTTTTTTGGGGGGGGGAATTTAA
CTGTGAAAATAGTCACTTGGACAGAATGAAGGACAAAGATAGCAAAATAGAAAAAAATACATAG
ACAAATTAAATATAACTGTTCAGTTGAGCAAAGAATGATTTGACACCACAACAATTTGTGAGAG
TGGGGATGCCATGGGGCTGGATATTTATAGACAGGAGAAGGCATGTGCCTTACTGAAGAGTAAT
CCCAGTTGGTTTGTGCCTGGTAAGTGCCTTATTTGAACCTAGTTTGATCAAGTTGGCCACTCTG
ATTGGCTAAGACTCGGTTCTGAAGTTAGGTCTTGAATTTTGTTTGTTTACTGAGACAGGTTGCA
ATTCTCTACAGGTGAGGGCTCAGGTGTGTGAGTAGGAAAGCTTTCTTAGGCTAATTTAGTTTGC
TTTAATAAAGTACTTACAAGGTTGCCTTACCAGGTTTGGCCCTCAACAAGTTCTGTCTTGCAGG
GTCTCTGAGGAGCCTTGGAATCTCAAAGATGTCCTTCTAGGGTTAATGGGAAAAGCACTTACCT
ATCAAATTCTGCCCCCTGATGGTCAAGGGTGGCCTCACAGATGCTTTTGTGCCTGCAGTCTGCC
GCAGCGGGCATCTCACTCAGAATATGGGAGAAGCCGGACTGCAGGAATGAGCTCCAGTCTTTCC
TTGAGAGGGAGACCAGGTGATGACAGCCATGATCCCATCGGTTTGGCCCCAGGGCCTGAGCCAT
GGAATTGGCCCTAGGGCAGCAAGAACCTGTTGTTTCAGAAGTCGGTGACCTTTGAGGATGTGGC
TGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACAGAGAGCATTGTACAGGGAT
GTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGGGATTTCCACTTCTCAAACCTGCTGTGA
TCTCACAGCTAGAGGAAGGAGAGGATCTGGAAAGCCTGTCTCAGCTGGCCACTGGAACAGACTC
CCAGGGCCTCTGGACTGAATGTACTGCTATCCAGACTGGCATTAATTTGACAAAAGACGTGTAT
GAAGAGAAAAAGAATACATTATTTGAACTTCAGAAGGACTTTTCTCAGGAAACACACTTTTCAA
AAACTTATATTGTTGGCCAACAGCAGGAAACGCAGTCAGCAGGAAGTGAGAGGGAGAGTGTCAG
CGCCTCCAATGGAAGAGCTAAGACAAGCCCCGTGGAAGGGCATTTACCTAGTCCCATGCCACAC
TTGTCTCAGGACCATGCCAGCTCTGCTGGAGAGCAGTACTCTGACACCAAACTTACTAAGAATG
AGAAAATTACTGCACAGGAAACACCTTTGAAACACAAAGAATTAGCAGAGGCTTCTCAGGGTAG
CTCTCAAGTTAATCAGCTTCCAGAAAGCTGTGATGTGGAGAAGCCCTATCAGTGTACAGAATGT
GGCAAAGCCTTCAGTGTTAAAGCCAAGTTTGTTTGGCATCAAAGACTTCATAATGGAGAGAAAC
CTTTCAAATGTGTGGAGTGTGGGAAATGCTTTAGCTACAGTTCACACTATATCACACATCAGAC
AATCCACAGTGGAGAAAAGCCGTACCAGTGTAAGGTGTGTGGCAAAGCCTTCAGTGTTAACGGA
AGTCTCGTTAGACATCAGAGGATACACACAGGAGAGAAGCCCTATCAGTGCAAGGAGTGTGGGA
CTGGCTTCGGTTGTAGTTCTGCATACATTACTCACCAGAGAACCCACACTGGGGAGAAACCTTA
CGAGTGCAGTGACTGTGGGAAAGCTTTCAATGTTAACGCCAAATTGATTCAGCATCAAAGAATC
CATACTGGAGAGAAGCCTTATGAATGTGATGTGTGCGGAAAGGGCTTCAGGTGCAGCACCCAGC
TTAGGCAGCATCAGAGTATACACACTGGAGAGAAGCCGCATCGCTGTAGTGAGTGTGGGAAAGG
CTTCACTAAAAATGCAAAGCTCATTCAACACCAAAGAGTGCACACGGGTGAGAAACCCTATGCG
TGCAGTGACTGTGGAAAGACTTTTAGTGCCAAAGGGAAGTTAATCCAGCACCAGAGAATCCACA
CAGGTGAGAGACCTTATGAATGTAGTGAGTGTGGGAAATCCTTTAGGTGTAACTCCCAGCTTCG
GCAGCATCTGAGAATCCATACTGGGGAGAAGCCATATAAATGCAATGAGTGTGGAAAGGCCTTC
AACGTTAATGCAAAGCTAATGCAGCACCGGAGAACTCACACTGGGGAGAAGCCGTTTGAATGCA
ATGAATGTGGGAAGTGCTTTACATCTAAAAGGAACCTGCTTGATCACCAGCGAACCCATACTGG
AGAGAAGCCATATCAGTGTAAGGAGTGTGGGAAAGCTTTCAGTATCAATGCGAAGTTAACTAGA
CATCAGCAAATACACACCAGGGAGAAACCTTTCAAGTGTATGGAATGTGAGAAAGCATTCAGCT
GTAGTTCTGACTATATTGTGCATCAGAGAATCCATACTGGAGAGAAACCCTTTCAGTGCAGCGA
GTGTGGTAAAGCCTTCCATGTCAATGCTCATTTAATTAGACACCAGAGAAGCCATACTGGGGAA
AAGCCTTTCCGATGCATGGAGTGTGGCAAGGGCTTCAGCCTTAGTTCTGATTGTATTATACATC
AGACTGTCCATACTTGGAAGAAACCCTATGTATGTAACATATGTGGGAAAACTTTCAGGTTTAG
CTTCCAACTTAGTCAGCACCAAGATGTTCACAATGAAGACAAATCCTAATGAAGACAAAAACAA
AACTAAACAAGCAAGCAAAACCCTAAAACCAGACCTATGTTTAATAAGAAGGGGATCATGGCTC
ATCAATTATTACTTGGAGGAAAACCATTAGAAGGAAATGAATATGGCAGTCTTCACTCGAAAAC
AATTTTTCTCTTATTTTTAATCAAGATGAGCAGCTGGAAAGATATCTAAAATACTTTTTTTTAA
TGAATTTTTGTTTTGTGTTTCAAGATAGCGTTTCTCTGTGCAGCTCTGGCTATCCTGGAACTCG
CTGTGTAGACTGGTCAGGCCTCCAACTGAGATTCACCAGCCTCTGCCTCCCGAGTACTGGTGTT
AAAGGTGCGCCTCAGCACTGCCCAAATAATAACTTGATTTATCCAGTATTAGTCAGGGAATATA
ATGAAGGGAAACATCCTATTCCCAGCAGCCTGAATCTACTTATCCACTTGATTTATCCAGTAAC
CAGTCAGGAAATATAATGAAGGGAAACATCCTATTCCCAGCAGCACCATAAAAAGTAGATTTTC
TAGGAAAATTTTCTGGGGCTGAAGAAAATTAAGGATTCTCAACTGAGGGAGACTAAAGAAAACA
AATACAAGAAGGAGGAGAGAAATTAATGTATTTCTGCTTCGTTTTGACAACAAGAATGCATTAC
ACATCCTTTAAAATGGGGGAAAGTAAACATTAAAAAATTGTTAGAAGAAGCCTTTAAAAACATC
AGATCCAAAATAGAGATGAACACTAAAGAGAGTGTTGGCAAATGACCACTCTAAACCCGTGTGT
TTTGTTGTAAATACTTCCAAATAAGTTTGAGTTGTAAAGCACAGACACACACACACACACACAC
ACACTCAAATGGAATGACCTTTGTAAAATTTGTGATATAGTGTAATATCTAGTACTCAGATTTT
AACAAAAGATAAAAATCAACAGTGACATTAACAGTGCTTTCGGATCACCAGTGTTCTAAAGAAG
TGTCCCTTCTCAGTACCCCAAGGGGTAGAAATTAGTGAAGACTTGCATGTCACATTGAGTATAT
GATATGCATTACCCCTCCCCCAATACTCTGCAGCCCTCAGTGATTGTAGGTGCTATATTTGCTA
CAGATGCCTGCCATACAAGCACAAATTATATTAACAAAATAGCATGTTAGAGTTCCTATTTTGT
AGTGACTGAACTCAGCAAACATGACTATGCCCTGAAGAAAGGTATCTGCATTGACTTCGATGCT
TTGTGATAATTGGGCTCCATGAAAATGTTGGAATTCTTAAGATACTTTTTGAAATCTCTTTCCC
CCTTTTAAAACAAAAACCAAAACAAAACACTGTAAGCCATTAATAAGATCACTTGAGCTGCCAA
AAAGCTGACAATCAGCAGTTATTTCTCTGTTGTCAACTGGTAATGGGTAAGAAAGGAAAAGGTT
TCCTACTTAACAACACCTCTAGTACCAAACATTCAGGTTTCCACACCAATTTAGTTGTTTGCAG
ACACCAACTGGATGTCCTCCAATTTCTATCAATTTTGCCATAATAAACATCCTACTGGTGAAGT
GGGCTCAGTCTGAGAAGACTGCCAGTCTCCTCCCCCTATATTCAGACACTAATGATGAGTCCTA
CATTACTGATTTGGTTACAAATTGAACCCTCTGGGTTCAGTAATTTTCTATGGTAACTCATCAA
ACTTAAAGAGACAATTTAAAGTTACCATTTACTCTAAATTATATCGTGAATGTCACAGGAGCAG
CCAGATGAAGAGATGAACAAGATCCAAAGGGTTCCCCATGTGAAGGTGTGTTTGTCCCCAGAGT
CGAGTGCTTCACCTGTTGAGCCTTGCTGTTTAGTGTTTGTATGAAGATTACAGTGCGTGCCCAT
GACTGATGAAGGCCTTGGCTGTTAGATAGGTTTCCCCTTCCAGAAGTCAGCAGGGGTTGTTAAA
AGTTCCAACTCTCTTAGCACATAGTTGGCTCCTTTGACAACTAGCCCCAATCCTGGAGCTAGCA
AGGAGTCTAGCGACAAGTCGCTTTAGCATAAACAGATGACGGCAAGAGACCTTAGGAGTAACAA
AAGGTTTTAGGTTTTCTTTGTGTGTGTGGTGCTGGAAACTGGAGAGAGACCAAACATGCTTAAG
TCACAGGCAAAAACCCATTTACTTGGTTCAAATCCCCTTAAGTCTGGGGAATTTTGGGTTTGTT
TGTCTTTAGTTCAGTAGTAAATAGGATAAAATGAAAACCCAGCTCTGGGGAAGCCATTAGCTCT
AGGAGCAAAGATGAACCCTGGGCAGTGTAGACTATTAGTGCTTTTCCATATAGCAGTTCTTTCC
AAAATGTCTTCATTTAAGAGTTGTGTAATGGCTAGTGACATGGCTCACAGGTAAAGGCTAAACT
CGACCCAAGTTTCAATCTCTAGAGCCCACATGATGGGAAGGACAGATTGACACACAGTTGTCCT
CTGGCCTCTGTGCATGCATGAAAATAATAATGTCATTTAAAAAAAACCTAAAATACCTATACTG
AAATTAAGCATATTGATCATCTTGAAGTGTGCAATTCGTCTATTCAAATAAATCTAATAATCTG
CTGAA

hide sequence

RefSeq Acc Id:

XM_039097754 ⟹ XP_038953682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI

RefSeq Acc Id:

XM_039097756 ⟹ XP_038953684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI

RefSeq Acc Id:

XM_039097757 ⟹ XP_038953685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI

RefSeq Acc Id:

XM_039097758 ⟹ XP_038953686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,965,269 - 54,976,888 (+)	NCBI
mRatBN7.2	19	38,053,953 - 38,071,196 (+)	NCBI

RefSeq Acc Id:

XM_063278055 ⟹ XP_063134125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI

RefSeq Acc Id:

XM_063278056 ⟹ XP_063134126

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	54,963,400 - 54,976,888 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100898	(Get FASTA)	NCBI Sequence Viewer
	XP_006255650	(Get FASTA)	NCBI Sequence Viewer
	XP_006255651	(Get FASTA)	NCBI Sequence Viewer
	XP_017456782	(Get FASTA)	NCBI Sequence Viewer
	XP_038953682	(Get FASTA)	NCBI Sequence Viewer
	XP_038953684	(Get FASTA)	NCBI Sequence Viewer
	XP_038953685	(Get FASTA)	NCBI Sequence Viewer
	XP_038953686	(Get FASTA)	NCBI Sequence Viewer
	XP_063134125	(Get FASTA)	NCBI Sequence Viewer
	XP_063134126	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92528	(Get FASTA)	NCBI Sequence Viewer
	EDL92529	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022757
	ENSRNOP00000022757.5

RefSeq Acc Id:

NP_001100898 ⟸ NM_001107428

- UniProtKB:

D3ZLR3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTAMIPSVWPQKSVTFEDVAVYFTQTEWDGLSPEQRALYRDVMLENYRNLASVGFPLLKPAVIS
QLEEGEDLESLSQLATGTDSQGLWTECTAIQTGINLTKDVYEEKKNTLFELQKDFSQETHFSKT
YIVGQQQETQSAGSERESVSASNGRAKTSPVEGHLPSPMPHLSQDHASSAGEQYSDTKLTKNEK
ITAQETPLKHKELAEASQGSSQVNQLPESCDVEKPYQCTECGKAFSVKAKFVWHQRLHNGEKPF
KCVECGKCFSYSSHYITHQTIHSGEKPYQCKVCGKAFSVNGSLVRHQRIHTGEKPYQCKECGTG
FGCSSAYITHQRTHTGEKPYECSDCGKAFNVNAKLIQHQRIHTGEKPYECDVCGKGFRCSTQLR
QHQSIHTGEKPHRCSECGKGFTKNAKLIQHQRVHTGEKPYACSDCGKTFSAKGKLIQHQRIHTG
ERPYECSECGKSFRCNSQLRQHLRIHTGEKPYKCNECGKAFNVNAKLMQHRRTHTGEKPFECNE
CGKCFTSKRNLLDHQRTHTGEKPYQCKECGKAFSINAKLTRHQQIHTREKPFKCMECEKAFSCS
SDYIVHQRIHTGEKPFQCSECGKAFHVNAHLIRHQRSHTGEKPFRCMECGKGFSLSSDCIIHQT
VHTWKKPYVCNICGKTFRFSFQLSQHQDVHNEDKS

hide sequence

RefSeq Acc Id:	XP_006255651 ⟸ XM_006255589
- Peptide Label:	isoform X1
- UniProtKB:	D3ZLR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTAMIPSVWPQKSVTFEDVAVYFTQTEWDGLSPEQRALYRDVMLENYRNLASVGFPLLKPAVIS QLEEGEDLESLSQLATGTDSQGLWTECTAIQTGINLTKDVYEEKKNTLFELQKDFSQETHFSKT YIVGQQQETQSAGSERESVSASNGRAKTSPVEGHLPSPMPHLSQDHASSAGEQYSDTKLTKNEK ITAQETPLKHKELAEASQGSSQVNQLPESCDVEKPYQCTECGKAFSVKAKFVWHQRLHNGEKPF KCVECGKCFSYSSHYITHQTIHSGEKPYQCKVCGKAFSVNGSLVRHQRIHTGEKPYQCKECGTG FGCSSAYITHQRTHTGEKPYECSDCGKAFNVNAKLIQHQRIHTGEKPYECDVCGKGFRCSTQLR QHQSIHTGEKPHRCSECGKGFTKNAKLIQHQRVHTGEKPYACSDCGKTFSAKGKLIQHQRIHTG ERPYECSECGKSFRCNSQLRQHLRIHTGEKPYKCNECGKAFNVNAKLMQHRRTHTGEKPFECNE CGKCFTSKRNLLDHQRTHTGEKPYQCKECGKAFSINAKLTRHQQIHTREKPFKCMECEKAFSCS SDYIVHQRIHTGEKPFQCSECGKAFHVNAHLIRHQRSHTGEKPFRCMECGKGFSLSSDCIIHQT VHTWKKPYVCNICGKTFRFSFQLSQHQDVHNEDKS hide sequence

RefSeq Acc Id:	XP_006255650 ⟸ XM_006255588
- Peptide Label:	isoform X1
- UniProtKB:	D3ZLR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTAMIPSVWPQKSVTFEDVAVYFTQTEWDGLSPEQRALYRDVMLENYRNLASVGFPLLKPAVIS QLEEGEDLESLSQLATGTDSQGLWTECTAIQTGINLTKDVYEEKKNTLFELQKDFSQETHFSKT YIVGQQQETQSAGSERESVSASNGRAKTSPVEGHLPSPMPHLSQDHASSAGEQYSDTKLTKNEK ITAQETPLKHKELAEASQGSSQVNQLPESCDVEKPYQCTECGKAFSVKAKFVWHQRLHNGEKPF KCVECGKCFSYSSHYITHQTIHSGEKPYQCKVCGKAFSVNGSLVRHQRIHTGEKPYQCKECGTG FGCSSAYITHQRTHTGEKPYECSDCGKAFNVNAKLIQHQRIHTGEKPYECDVCGKGFRCSTQLR QHQSIHTGEKPHRCSECGKGFTKNAKLIQHQRVHTGEKPYACSDCGKTFSAKGKLIQHQRIHTG ERPYECSECGKSFRCNSQLRQHLRIHTGEKPYKCNECGKAFNVNAKLMQHRRTHTGEKPFECNE CGKCFTSKRNLLDHQRTHTGEKPYQCKECGKAFSINAKLTRHQQIHTREKPFKCMECEKAFSCS SDYIVHQRIHTGEKPFQCSECGKAFHVNAHLIRHQRSHTGEKPFRCMECGKGFSLSSDCIIHQT VHTWKKPYVCNICGKTFRFSFQLSQHQDVHNEDKS hide sequence

RefSeq Acc Id:

XP_017456782 ⟸ XM_017601293

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLENYRNLASVGFPLLKPAVISQLEEGEDLESLSQLATGTDSQGLWTECTAIQTGINLTKDVYE
EKKNTLFELQKDFSQETHFSKTYIVGQQQETQSAGSERESVSASNGRAKTSPVEGHLPSPMPHL
SQDHASSAGEQYSDTKLTKNEKITAQETPLKHKELAEASQGSSQVNQLPESCDVEKPYQCTECG
KAFSVKAKFVWHQRLHNGEKPFKCVECGKCFSYSSHYITHQTIHSGEKPYQCKVCGKAFSVNGS
LVRHQRIHTGEKPYQCKECGTGFGCSSAYITHQRTHTGEKPYECSDCGKAFNVNAKLIQHQRIH
TGEKPYECDVCGKGFRCSTQLRQHQSIHTGEKPHRCSECGKGFTKNAKLIQHQRVHTGEKPYAC
SDCGKTFSAKGKLIQHQRIHTGERPYECSECGKSFRCNSQLRQHLRIHTGEKPYKCNECGKAFN
VNAKLMQHRRTHTGEKPFECNECGKCFTSKRNLLDHQRTHTGEKPYQCKECGKAFSINAKLTRH
QQIHTREKPFKCMECEKAFSCSSDYIVHQRIHTGEKPFQCSECGKAFHVNAHLIRHQRSHTGEK
PFRCMECGKGFSLSSDCIIHQTVHTWKKPYVCNICGKTFRFSFQLSQHQDVHNEDKS

hide sequence

Ensembl Acc Id:

ENSRNOP00000022757 ⟸ ENSRNOT00000022757

RefSeq Acc Id:	XP_038953686 ⟸ XM_039097758
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038953682 ⟸ XM_039097754
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038953684 ⟸ XM_039097756
- Peptide Label:	isoform X2
- UniProtKB:	D3ZLR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953685 ⟸ XM_039097757
- Peptide Label:	isoform X2
- UniProtKB:	D3ZLR3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092179 ⟸ ENSRNOT00000112604

RefSeq Acc Id:	XP_063134126 ⟸ XM_063278056
- Peptide Label:	isoform X2
- UniProtKB:	D3ZLR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134125 ⟸ XM_063278055
- Peptide Label:	isoform X2
- UniProtKB:	D3ZLR3 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZLR3-F1-model_v2	AlphaFold	D3ZLR3	1-675	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307197	AgrOrtholog
BioCyc Gene	G2FUF-5700	BioCyc
Ensembl Genes	ENSRNOG00000016971	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022757	ENTREZGENE
	ENSRNOT00000022757.7	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Zinc_finger	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
NCBI Gene	307839	ENTREZGENE
PANTHER	PR DOMAIN ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 22	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PhenoGen	Zfp612	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016971	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	D3ZLR3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Zfp612	zinc finger protein 612	LOC108353194	uncharacterized LOC108353194	Data merged from RGD:11502180	737654	PROVISIONAL
2016-08-02	LOC108353194	uncharacterized LOC108353194			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-11-27	Zfp612	zinc finger protein 612	Zfp23	zinc finger protein 23	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-19	Zfp23	zinc finger protein 23	Znf23	zinc finger protein 23 (KOX 16)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Znf23	zinc finger protein 23 (KOX 16)	Zfp612	zinc finger protein 612	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Zfp612	zinc finger protein 612	Zfp612_predicted	zinc finger protein 612 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zfp612_predicted	zinc finger protein 612 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD