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Gene: Zfand3 (zinc finger AN1-type containing 3) Rattus norvegicus

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Symbol:

Zfand3

Name:

zinc finger AN1-type containing 3

RGD ID:

1307113

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human ZFAND3 (zinc finger AN1-type containing 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amitrole; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

AN1-type zinc finger protein 3; LOC361816; testis expressed gene 27; testis-expressed protein 27; testis-expressed sequence 27; Tex27; zinc finger, AN1-type domain 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZFAND3 (zinc finger AN1-type containing 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Zfand3 (zinc finger, AN1-type domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zfand3 (zinc finger AN1-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZFAND3 (zinc finger AN1-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZFAND3 (zinc finger AN1-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zfand3 (zinc finger AN1-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZFAND3 (zinc finger AN1-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZFAND3 (zinc finger AN1-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zfand3 (zinc finger AN1-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zfand3 (zinc finger AN1-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	OPTN (optineurin)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZFAND3 (zinc finger AN1-type containing 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfand3 (zinc finger, AN1-type domain 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zfand3 (zinc finger, AN1-type domain 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zfand3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zfand3	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	8,084,898 - 8,281,093 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	8,084,299 - 8,281,094 (+)	Ensembl				GRCr8
mRatBN7.2	20	8,083,407 - 8,279,617 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	8,082,200 - 8,279,616 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	8,777,912 - 8,972,997 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	8,139,086 - 8,334,154 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	8,613,320 - 8,808,646 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	8,693,989 - 8,892,572 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	8,696,436 - 8,892,569 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	10,942,042 - 11,081,447 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	8,383,832 - 8,523,596 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	9,670,691 - 9,809,996 (+)	NCBI		Celera
RGSC_v3.1	20	8,384,058 - 8,523,822 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

juvenile rheumatoid arthritis (ISO)

type 2 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

DDE (ISO)

dibutyl phthalate (EXP,ISO)

doxorubicin (EXP)

ethanol (ISO)

FR900359 (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

lead(0) (ISO)

leflunomide (EXP,ISO)

mercury atom (ISO)

mercury(0) (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

theophylline (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triphenylstannane (ISO)

troglitazone (ISO)

tunicamycin (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

Zfand3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	8,084,898 - 8,281,093 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	8,084,299 - 8,281,094 (+)	Ensembl				GRCr8
mRatBN7.2	20	8,083,407 - 8,279,617 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	8,082,200 - 8,279,616 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	8,777,912 - 8,972,997 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	8,139,086 - 8,334,154 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	8,613,320 - 8,808,646 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	8,693,989 - 8,892,572 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	8,696,436 - 8,892,569 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	10,942,042 - 11,081,447 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	8,383,832 - 8,523,596 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	9,670,691 - 9,809,996 (+)	NCBI		Celera
RGSC_v3.1	20	8,384,058 - 8,523,822 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

ZFAND3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	37,819,727 - 38,154,624 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	37,819,429 - 38,154,624 (+)	Ensembl			hg38	GRCh38
GRCh37	6	37,787,503 - 38,122,400 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	37,895,611 - 38,230,375 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	37,895,610 - 38,230,375	NCBI
Celera	6	39,342,340 - 39,675,929 (+)	NCBI		Celera
Cytogenetic Map	6	p21.2	NCBI
HuRef	6	37,507,083 - 37,840,908 (+)	NCBI		HuRef
CHM1_1	6	37,789,210 - 38,124,343 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	37,644,497 - 37,979,293 (+)	NCBI		T2T-CHM13v2.0

Zfand3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	30,224,013 - 30,429,797 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	30,223,707 - 30,429,802 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	30,005,039 - 30,210,823 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	30,004,733 - 30,210,828 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	30,142,032 - 30,346,965 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	29,732,099 - 29,937,032 (+)	NCBI		MGSCv36	mm8
Celera	17	30,505,153 - 30,744,363 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	15.59	NCBI

Zfand3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	5,157,309 - 5,356,290 (-)	Ensembl
ChiLan1.0	NW_004955437	5,158,936 - 5,356,243 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZFAND3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	52,290,249 - 52,626,657 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	48,160,319 - 48,496,477 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	37,383,659 - 37,743,202 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	38,683,965 - 38,909,049 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	38,683,961 - 38,906,806 (+)	Ensembl			panPan2	panpan1.1

ZFAND3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	6,819,403 - 7,140,144 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	6,820,354 - 7,139,722 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	6,835,819 - 7,156,401 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	7,283,659 - 7,604,757 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	7,284,713 - 7,604,738 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	6,819,355 - 7,143,485 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	6,902,112 - 7,221,556 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	7,001,337 - 7,326,240 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zfand3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	42,369,191 - 42,594,915 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	21,365,190 - 21,591,090 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	21,365,287 - 21,591,031 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFAND3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	33,378,286 - 33,718,030 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	33,378,229 - 33,718,034 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	38,858,439 - 38,940,839 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZFAND3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	33,987,544 - 34,319,671 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	33,987,449 - 34,319,621 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	37,779,066 - 38,112,531 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zfand3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	20,026,682 - 20,340,684 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	20,024,580 - 20,340,758 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zfand3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	3,664,330 - 3,855,619 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfand3
1431 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	264
Count of miRNA genes:	171
Interacting mature miRNAs:	209
Transcripts:	ENSRNOT00000045636
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8043920	15089182	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3626323	10078622	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3626323	9244918	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

AW539211

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	8,279,203 - 8,279,295 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	8,892,157 - 8,892,248	NCBI	Rnor6.0
Rnor_5.0	20	11,081,034 - 11,081,125	UniSTS	Rnor5.0
RGSC_v3.4	20	8,523,183 - 8,523,274	UniSTS	RGSC3.4
Celera	20	9,809,583 - 9,809,674	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000085131 ⟹ ENSRNOP00000069304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	8,084,828 - 8,281,092 (+)	Ensembl
mRatBN7.2 Ensembl	20	8,083,407 - 8,279,616 (+)	Ensembl
Rnor_6.0 Ensembl	20	8,696,436 - 8,892,569 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102831 ⟹ ENSRNOP00000097588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	8,084,299 - 8,281,094 (+)	Ensembl
mRatBN7.2 Ensembl	20	8,082,200 - 8,279,612 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118523 ⟹ ENSRNOP00000088399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	8,084,828 - 8,281,092 (+)	Ensembl
mRatBN7.2 Ensembl	20	8,083,407 - 8,279,616 (+)	Ensembl

RefSeq Acc Id:

NM_001012175 ⟹ NP_001012175

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	8,084,898 - 8,281,093 (+)	NCBI
mRatBN7.2	20	8,083,407 - 8,279,617 (+)	NCBI
Rnor_6.0	20	8,696,436 - 8,892,570 (+)	NCBI
Rnor_5.0	20	10,942,042 - 11,081,447 (+)	NCBI
RGSC_v3.4	20	8,383,832 - 8,523,596 (+)	RGD
Celera	20	9,670,691 - 9,809,996 (+)	RGD

Sequence:

show sequence

CCCGCCCCGCGCCCCCCGCCGCTGCCGCCGCCGCCTCCGCTTCCTCCGAGGGGGGCCCAGGCCC
AGCCGCCGCCGCCGCCGCCGCCGTCGCCTCCGAGCTCCGCCGCCGCCGCCGAGCACCATGGGAG
ACGCCGGGAGCGAGCGTAGCAAAGCGCCCAGCCTGCCGCCTCGCTGTCCCTGCGGCTTCTGGGG
GTCCAGCAAGACTATGAATCTCTGTTCCAAATGCTTTGCTGATTTTCAAAAGAAACAACCAGAT
GATGATTCCACCCCAAGTACAAGTAACAGCCAATCAGATTTGTTTTCTGAAGAGACCACCAGTG
ACAACAACAATACCTCCGTAACCACGCCAACTCTTAGTCCCAGCCAGCAGTCGCTCCCGACAGA
ACTGAATGTAACTTCACCGAGTGAAGAGGAATGTGGGCCATGCACAGACACAGCTCATGTCTCG
TTAATCACACCAACCAAAAGATCCTGTGGTGCAGATTCACAGTCCGAGAGCGAGGCTTCACCCG
TGAAACGACCGCGACTCGTAGAGAACCCCGAGCGGCCTGAGGAGAGCGGCCGGTCGAAGCAGAA
GAGCCGGCGCCGGTGCTTTCAGTGCCAGACGAAGCTGGAGCTGGTGCAGCAGGAACTGGGCTCC
TGTCGCTGTGGGTACGTGTTCTGCATGTTACATCGCCTCCCAGAGCAGCACGACTGTACGTTCG
ACCACATGGGCCGTGGCCGCGAGGAAGCCATCATGAAAATGGTGAAACTGGACCGGAAAGTGGG
GCGCTCCTGCCAGCGCATCGGGGAGGGGTGCTCCTGAAGGCCAGGCACGGCCACCACACGACGC
TGTTCTTAGTTCACTAATGTTAGCCTTATTTAGGACAAAGTCAGCCAGACACCTTGTACTGGGC
ACGCGTCAGACTACAGCCAGCCGTCTTCTTTCTTTAGCCAGCCATCCTGGTACTGTAGTTTAGG
GGTTGATGGTGGATGAAATTGATGTCTGGCTGGTTACTAAGGTGCCTGCTAGCCATTGTATAAA
ATTAAAACATGAAGACTATTTGTTTTGAGCATGGCTAGTGGATTCACAACAACACATGCCTGTC
ACTGCTGGAGTCGCACTTACAAAGCCTTAAGCGGAAAGTGTCCAGAGCAGACCGAGGCAGCAGG
GCAGGTGCAGGCCGCGCCGCCCACGCGGGCGGCTTTGACAGAAACTCTTCCATGTTCGGCCTTT
CACCTCTTCACTTTCGCTTGGTCCCAGCAGGACCTGATGGCCACGCGTGCCTTGGCCACAGGAA
GCTGCTGAGACTGACCACGTGGCCGGGCTGGGCTGGGCCCTCACTCTCCCTCAGCTGGAAGTCA
GGGTGGGGACAGATTCTATGGAGGAAGCTTTTGAACCTGTTGTTACGGGGAAACTCATCACACA
AGGAGAGAGACAACTCCACTTTGAAAATTAGCTCCCCTCAAGCCTAGTCCATGCACGGTCTCCA
CCTTTTCTGCACAGGATCCGTGGTTGTGACCCGGCTCTGGCTGTCGCTTGCTGAGAGCATTGGT
GTTGCTCCTGGCAGGCCTGAGGCGTCAACCAGATGTCCATGGCCACGAGAGTCAGTGAGCGCAC
AGGGGATCTGCTGCTGCCCTTCCTGGCAGGAGTCTCCTCTTGTTTCTATGCAGCCATAGTTTGA
GGACAACCAGGCCAACAACCTCAGGACAAGTTCAGGAAGGAAAGACAGTGGACTGCATGGGACC
CTGGTGTGGCTCTAGAACGTTGAGAGTGGTGGCTGTGGGTGGGAGGCAGCTCTCAGCTTGGGTC
TGAACGGGGCTGGTTAGAAACCACTCAGGGGGCGGGGCGGGGCGATTCTGGGAGTCTCTGGAAA
GCCTTGGTCAGGTTTAAGTGCCACACCTTGCGTGCATCTGTCCCAGATCGTGGCTTGGCCGGAG
CTGTCCATGTCTGACTGCTGAGTGGTTTAGCCCAGTGACTTTCCCTTGTGTAGGTGAGCAAGGT
CTGCTTCCCAGATGAACAGATCTGCAAGTATAATGTCGTGATCCAAGATAGCGAATAGGAAATC
ATGTTCTTCCCACCCTGCACCCAGTCTGCACCCCAGCAGAGGGGACCCAGTGCAGAAGCTCCAG
CCTTAATTCTTGCTTCAGGACCCAGACCAGCCCCTCACTCGAGGGCAACCCAGGGTACGGTGCA
GGTCTGCCTAGCGTTTACCACTGCTGTTAAGCCACAGCTCTCTGGCCCCACATGGCCGTCCTCG
GTGAGGCGCCGTGTACCCTTCTTAGGCCCTCAGGTCCCCAGAGCACTAGGAGGGGGTGCTGGGG
ACCATGTGCCCAGGGACCGCAGCCAGGTTCACGCCTGCTGGGGGAGCTGGGCAGGGGAGGAAGG
GCTTGTTCCCTACAGTATCTGTTCTGTGAAGTTTGTTAAATGTAAGGGAAGCTGAAATTCTTGT
ATCTTAAAGAGGAAATCTTATTTAACCCTTTGTGTCCTAGATTGACTTACACACATAGCCTAGA
GCTCAGTTTTAGTTTAACATTGTGGAAATATTAAAAGAATCTTGTAACTTTATTCTTTTTTTTC
TCCTGCTGAAACAAATTAAACCAATCGTATGGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012175	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85956	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069304
	ENSRNOP00000069304.2
GenBank Protein	Q5U2M7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012175 ⟸ NM_001012175

- UniProtKB:

Q5U2M7 (UniProtKB/Swiss-Prot), A0A0G2JV07 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEET
TSDNNNTSVTTPTLSPSQQSLPTELNVTSPSEEECGPCTDTAHVSLITPTKRSCGADSQSESEA
SPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDC
TFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS

hide sequence

Ensembl Acc Id:

ENSRNOP00000069304 ⟸ ENSRNOT00000085131

Ensembl Acc Id:

ENSRNOP00000097588 ⟸ ENSRNOT00000102831

Ensembl Acc Id:

ENSRNOP00000088399 ⟸ ENSRNOT00000118523

Protein Domains

A20-type AN1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2M7-F1-model_v2	AlphaFold	Q5U2M7	1-227	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701466

Promoter ID:

EPDNEW_R11990

Type:

initiation region

Name:

Zfand3_1

Description:

zinc finger AN1-type containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	8,696,390 - 8,696,450	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307113	AgrOrtholog
BioCyc Gene	G2FUF-4351	BioCyc
Ensembl Genes	ENSRNOG00000059659	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000085131	ENTREZGENE
	ENSRNOT00000085131.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.5.4770	UniProtKB/Swiss-Prot
	4.10.1110.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7134959	IMAGE-MGC_LOAD
InterPro	AN1-like_Znf	UniProtKB/Swiss-Prot
	AN1_A20_ZnFinger	UniProtKB/Swiss-Prot
	Znf_A20	UniProtKB/Swiss-Prot
	Znf_AN1	UniProtKB/Swiss-Prot
KEGG Report	rno:361816	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95308	IMAGE-MGC_LOAD
NCBI Gene	361816	ENTREZGENE
PANTHER	AN1-TYPE ZINC FINGER PROTEIN	UniProtKB/Swiss-Prot
	AN1-TYPE ZINC FINGER PROTEIN 3	UniProtKB/Swiss-Prot
Pfam	zf-A20	UniProtKB/Swiss-Prot
	zf-AN1	UniProtKB/Swiss-Prot
PhenoGen	Zfand3	PhenoGen
PROSITE	ZF_A20	UniProtKB/Swiss-Prot
	ZF_AN1	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000059659	RatGTEx
SMART	ZnF_A20	UniProtKB/Swiss-Prot
	ZnF_AN1	UniProtKB/Swiss-Prot
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot
	SSF118310	UniProtKB/Swiss-Prot
UniProt	A0A0G2JV07	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A6F9_RAT	UniProtKB/TrEMBL
	A0A8I6ARI3_RAT	UniProtKB/TrEMBL
	Q5U2M7	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Zfand3	zinc finger AN1-type containing 3	Zfand3	zinc finger, AN1-type domain 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Zfand3	zinc finger, AN1-type domain 3	Tex27	testis expressed gene 27	Symbol and Name updated	1299863	APPROVED
2005-12-06	Tex27	testis expressed gene 27	Tex27_predicted	testis expressed gene 27 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Tex27_predicted	testis expressed gene 27 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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