Rpf2 (ribosome production factor 2 homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rpf2 (ribosome production factor 2 homolog) Rattus norvegicus
Analyze
Symbol: Rpf2
Name: ribosome production factor 2 homolog
RGD ID: 1306906
Description: Predicted to enable 5S rRNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); protein localization to nucleolus; and regulation of signal transduction by p53 class mediator. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human RPF2 (ribosome production factor 2 homolog); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: brix domain containing 1; Bxdc1; LOC294436; ribosome production factor 2 homolog (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82045,184,511 - 45,205,983 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2045,184,512 - 45,206,001 (-)EnsemblGRCr8
mRatBN7.22043,630,003 - 43,651,477 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2043,629,951 - 43,651,509 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2045,379,014 - 45,400,466 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02045,038,205 - 45,059,655 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02045,782,530 - 45,803,288 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02045,321,381 - 45,342,865 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2045,321,405 - 45,342,948 (-)Ensemblrn6Rnor6.0
Rnor_5.02047,041,336 - 47,062,600 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42044,388,637 - 44,410,093 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2044,336,784 - 44,358,198 (-)NCBICelera
RGSC_v3.12044,411,626 - 44,433,112 (-)NCBI
Cytogenetic Map20q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
endosulfan  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
glafenine  (EXP)
indometacin  (ISO)
ketamine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methylparaben  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rimonabant  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA,ISO)
nucleolus  (IBA,IEA,ISO)

Molecular Function
5S rRNA binding  (IEA,ISO)
protein binding  (ISO)
rRNA binding  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22658674   PMID:22681889   PMID:24120868  


Genomics

Comparative Map Data
Rpf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82045,184,511 - 45,205,983 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2045,184,512 - 45,206,001 (-)EnsemblGRCr8
mRatBN7.22043,630,003 - 43,651,477 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2043,629,951 - 43,651,509 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2045,379,014 - 45,400,466 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02045,038,205 - 45,059,655 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02045,782,530 - 45,803,288 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02045,321,381 - 45,342,865 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2045,321,405 - 45,342,948 (-)Ensemblrn6Rnor6.0
Rnor_5.02047,041,336 - 47,062,600 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42044,388,637 - 44,410,093 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2044,336,784 - 44,358,198 (-)NCBICelera
RGSC_v3.12044,411,626 - 44,433,112 (-)NCBI
Cytogenetic Map20q12NCBI
RPF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386110,982,038 - 111,028,263 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6110,982,015 - 111,028,263 (+)Ensemblhg38GRCh38
GRCh376111,303,241 - 111,349,466 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366111,409,984 - 111,453,487 (+)NCBIBuild 36Build 36hg18NCBI36
Celera6112,049,860 - 112,093,367 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6108,874,129 - 108,917,809 (+)NCBIHuRef
CHM1_16111,566,361 - 111,609,868 (+)NCBICHM1_1
T2T-CHM13v2.06112,160,651 - 112,206,881 (+)NCBIT2T-CHM13v2.0
Rpf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391040,099,242 - 40,123,035 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1040,099,242 - 40,123,032 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381040,223,246 - 40,247,039 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1040,223,246 - 40,247,036 (-)Ensemblmm10GRCm38
MGSCv371039,943,052 - 39,966,845 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361039,906,567 - 39,936,447 (-)NCBIMGSCv36mm8
Celera1041,110,053 - 41,133,833 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1021.76NCBI
Rpf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541135,627,209 - 35,662,557 (+)Ensembl
ChiLan1.0NW_00495541135,627,127 - 35,663,903 (+)NCBIChiLan1.0ChiLan1.0
RPF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25130,986,693 - 131,033,395 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16128,872,719 - 128,919,468 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06108,781,082 - 108,827,783 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16112,862,627 - 112,908,059 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6112,862,627 - 112,908,061 (+)EnsemblpanPan2panpan1.1
RPF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11267,516,991 - 67,566,287 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1267,490,780 - 67,557,609 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1267,335,580 - 67,376,101 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01268,395,291 - 68,436,015 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1268,395,357 - 68,438,309 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11267,746,416 - 67,787,450 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01267,592,889 - 67,642,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01267,870,432 - 67,910,925 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946102,459,974 - 102,490,507 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365646,734,942 - 6,765,099 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365646,734,872 - 6,765,370 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl176,917,185 - 76,963,831 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1176,917,114 - 76,959,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,305,739 - 86,345,805 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11362,856,730 - 62,890,934 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604035,150,972 - 35,192,345 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249161,932,881 - 1,967,656 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249161,932,773 - 1,967,935 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpf2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11840,001,069 - 40,022,519 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpf2
142 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:294
Count of miRNA genes:197
Interacting mature miRNAs:215
Transcripts:ENSRNOT00000000717
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203215696745978663Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000717   ⟹   ENSRNOP00000000717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2045,184,512 - 45,206,001 (-)Ensembl
mRatBN7.2 Ensembl2043,629,951 - 43,651,470 (-)Ensembl
Rnor_6.0 Ensembl2045,321,405 - 45,342,948 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095674   ⟹   ENSRNOP00000093895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2045,184,512 - 45,206,001 (-)Ensembl
mRatBN7.2 Ensembl2043,630,265 - 43,651,509 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099652   ⟹   ENSRNOP00000079814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2043,629,999 - 43,649,912 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105691   ⟹   ENSRNOP00000079370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2045,184,512 - 45,204,316 (-)Ensembl
mRatBN7.2 Ensembl2043,629,999 - 43,649,810 (-)Ensembl
RefSeq Acc Id: NM_001106391   ⟹   NP_001099861
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,184,528 - 45,205,983 (-)NCBI
mRatBN7.22043,630,019 - 43,651,477 (-)NCBI
Rnor_6.02045,321,381 - 45,342,865 (-)NCBI
Rnor_5.02047,041,336 - 47,062,600 (-)NCBI
RGSC_v3.42044,388,637 - 44,410,093 (-)RGD
Celera2044,336,784 - 44,358,198 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098599   ⟹   XP_038954527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,184,511 - 45,204,266 (-)NCBI
mRatBN7.22043,630,003 - 43,649,760 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099861 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954527 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58720 (Get FASTA)   NCBI Sequence Viewer  
  EDL87840 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000717
  ENSRNOP00000000717.7
  ENSRNOP00000079370.1
  ENSRNOP00000093895.2
RefSeq Acc Id: NP_001099861   ⟸   NM_001106391
- UniProtKB: B0BN82 (UniProtKB/TrEMBL),   A0A8I6AJR1 (UniProtKB/TrEMBL),   F7ENM1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000717   ⟸   ENSRNOT00000000717
RefSeq Acc Id: XP_038954527   ⟸   XM_039098599
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000093895   ⟸   ENSRNOT00000095674
Ensembl Acc Id: ENSRNOP00000079814   ⟸   ENSRNOT00000099652
Ensembl Acc Id: ENSRNOP00000079370   ⟸   ENSRNOT00000105691
Protein Domains
Brix

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN82-F1-model_v2 AlphaFold B0BN82 1-306 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701657
Promoter ID:EPDNEW_R12180
Type:initiation region
Name:Rpf2_1
Description:ribosome production factor 2 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02045,342,868 - 45,342,928EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306906 AgrOrtholog
BioCyc Gene G2FUF-3438 BioCyc
Ensembl Genes ENSRNOG00000000587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000717 ENTREZGENE
  ENSRNOT00000000717.9 UniProtKB/TrEMBL
  ENSRNOT00000095674.2 UniProtKB/TrEMBL
  ENSRNOT00000105691.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9089752 IMAGE-MGC_LOAD
InterPro Brix UniProtKB/TrEMBL
  Rpf2 UniProtKB/TrEMBL
KEGG Report rno:294436 UniProtKB/TrEMBL
MGC_CLONE MGC:187864 IMAGE-MGC_LOAD
NCBI Gene 294436 ENTREZGENE
PANTHER PTHR12728 UniProtKB/TrEMBL
  RIBOSOME PRODUCTION FACTOR 2 HOMOLOG UniProtKB/TrEMBL
Pfam Brix UniProtKB/TrEMBL
PhenoGen Rpf2 PhenoGen
PROSITE BRIX UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000587 RatGTEx
SMART Brix UniProtKB/TrEMBL
UniProt A0A8I5ZMX0_RAT UniProtKB/TrEMBL
  A0A8I6AJR1 ENTREZGENE, UniProtKB/TrEMBL
  B0BN82 ENTREZGENE, UniProtKB/TrEMBL
  F7ENM1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-30 Rpf2  ribosome production factor 2 homolog  Rpf2  ribosome production factor 2 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-28 Rpf2  ribosome production factor 2 homolog (S. cerevisiae)  Bxdc1  brix domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Bxdc1  brix domain containing 1   Bxdc1_predicted  brix domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Bxdc1_predicted  brix domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED