Advanced Search (OLGA)

Gene: Tecpr1 (tectonin beta-propeller repeat containing 1) Rattus norvegicus

Analyze

Symbol:

Tecpr1

Name:

tectonin beta-propeller repeat containing 1

RGD ID:

1306873

Description:

Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in autophagosome maturation and regulation of autophagosome maturation. Predicted to be located in nucleoplasm. Predicted to be active in autophagosome membrane and lysosomal membrane. Orthologous to human TECPR1 (tectonin beta-propeller repeat containing 1); INTERACTS WITH 1-benzylpiperazine; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC304285; MGC124730; RGD1306873; similar to RIKEN cDNA 2210010N04 gene; tectonin beta-propeller repeat-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	15,504,456 - 15,534,541 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	15,505,343 - 15,534,116 (+)	Ensembl				GRCr8
mRatBN7.2	12	10,391,587 - 10,420,462 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,391,696 - 10,419,611 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	11,198,869 - 11,226,872 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	11,822,165 - 11,850,168 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	10,845,551 - 10,873,599 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	12	16,983,713 - 17,011,639 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	12	16,910,448 - 16,938,404 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	12	15,761,504 - 15,789,460 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	12	26,343,660 - 26,371,616 (+)	NCBI		F344_StmMcwi
Rnor_6.0	12	12,374,132 - 12,403,382 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	12,374,790 - 12,402,552 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	14,426,445 - 14,454,202 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	10,719,095 - 10,747,027 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	12,190,848 - 12,218,752 (+)	NCBI		Celera
RGSC_v3.1	12	10,736,154 - 10,776,251 (+)	NCBI
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

esophageal atresia/tracheoesophageal fistula (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-benzylpiperazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

acrylamide (EXP)

Aflatoxin B2 alpha (ISO)

amphetamine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chrysene (ISO)

cisplatin (ISO)

clothianidin (ISO)

crocidolite asbestos (ISO)

diclofenac (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fipronil (EXP)

gentamycin (EXP)

glyphosate (EXP)

manganese(II) chloride (EXP)

methamphetamine (ISO)

N-methyl-4-phenylpyridinium (EXP)

ozone (ISO)

pentachlorophenol (ISO)

pirinixic acid (ISO)

senecionine (ISO)

sevoflurane (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tributylstannane (EXP)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome maturation (IBA,IEA,ISO,ISS)

autophagy (IEA,ISO,ISS)

macroautophagy (IEA,ISO)

regulation of autophagosome maturation (IEA,ISO)

Cellular Component

autophagosome membrane (IBA,IEA,ISO,ISS)

bounding membrane of organelle (IEA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

early endosome membrane (IEA,ISO)

lysosomal membrane (IBA,IEA,ISO,ISS)

membrane (IEA)

Molecular Function

lipid binding (IEA)

phosphatidylinositol-3-phosphate binding (IBA,IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21575909	PMID:22342342

Genomics

Comparative Map Data

Tecpr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	15,504,456 - 15,534,541 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	15,505,343 - 15,534,116 (+)	Ensembl				GRCr8
mRatBN7.2	12	10,391,587 - 10,420,462 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,391,696 - 10,419,611 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	11,198,869 - 11,226,872 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	11,822,165 - 11,850,168 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	10,845,551 - 10,873,599 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	12	16,983,713 - 17,011,639 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	12	16,910,448 - 16,938,404 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	12	15,761,504 - 15,789,460 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	12	26,343,660 - 26,371,616 (+)	NCBI		F344_StmMcwi
Rnor_6.0	12	12,374,132 - 12,403,382 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	12,374,790 - 12,402,552 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	14,426,445 - 14,454,202 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	10,719,095 - 10,747,027 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	12,190,848 - 12,218,752 (+)	NCBI		Celera
RGSC_v3.1	12	10,736,154 - 10,776,251 (+)	NCBI
Cytogenetic Map	12	p11	NCBI

TECPR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	98,214,624 - 98,252,232 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	98,214,624 - 98,252,235 (-)	Ensembl			hg38	GRCh38
GRCh37	7	97,843,936 - 97,881,544 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	97,683,972 - 97,719,404 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	92,539,935 - 92,575,367 (-)	NCBI		Celera
Cytogenetic Map	7	q21.3	NCBI
HuRef	7	92,445,624 - 92,482,323 (-)	NCBI		HuRef
CHM1_1	7	97,774,799 - 97,811,769 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	99,444,762 - 99,482,933 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	97,169,633 - 97,206,440 (-)	NCBI

Tecpr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	144,131,260 - 144,160,433 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	144,131,260 - 144,160,433 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	144,194,442 - 144,223,615 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	144,194,442 - 144,223,615 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	144,956,191 - 144,984,447 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	144,447,967 - 144,477,142 (-)	NCBI		MGSCv36	mm8
Celera	5	141,179,701 - 141,207,966 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	83.07	NCBI

Tecpr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	14,106,711 - 14,138,033 (-)	Ensembl
ChiLan1.0	NW_004955460	14,106,711 - 14,137,983 (-)	NCBI	ChiLan1.0	ChiLan1.0

TECPR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	116,061,930 - 116,098,903 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	164,326,564 - 164,363,553 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	6,269,935 - 6,306,941 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	103,680,161 - 103,716,572 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	103,680,156 - 103,716,572 (-)	Ensembl			panPan2	panpan1.1

TECPR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	11,086,498 - 11,112,236 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	11,086,423 - 11,112,241 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	12,712,441 - 12,738,602 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	11,086,505 - 11,112,680 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	11,086,464 - 11,112,670 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	10,955,215 - 10,981,372 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	10,935,026 - 10,961,189 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	11,169,072 - 11,195,233 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tecpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	139,163,869 - 139,188,658 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	756,072 - 781,549 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	756,602 - 781,422 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TECPR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	5,414,074 - 5,442,943 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	5,414,071 - 5,442,953 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	5,473,363 - 5,500,906 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TECPR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	14,912,281 - 14,953,427 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	14,912,529 - 14,956,059 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666070	1,123,889 - 1,163,984 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tecpr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	31,676,044 - 31,704,820 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624740	31,676,044 - 31,704,828 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tecpr1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	8,968,091 - 8,996,080 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tecpr1
202 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	116
Count of miRNA genes:	93
Interacting mature miRNAs:	108
Transcripts:	ENSRNOT00000001347
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1357337	Gluco3	Glucose level QTL 3		0.0004	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	12	1	16966671	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	11869600	16966542	Rat
61334	Gluco17	Glucose level QTL 17	6.3		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	12	1	16966671	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

D12Got13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	10,395,695 - 10,395,989 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	12,378,790 - 12,379,083	NCBI	Rnor6.0
Rnor_5.0	12	14,430,445 - 14,430,738	UniSTS	Rnor5.0
RGSC_v3.4	12	10,723,096 - 10,723,389	UniSTS	RGSC3.4
Celera	12	12,194,848 - 12,195,141	UniSTS
RH 3.4 Map	12	121.7	RGD
RH 3.4 Map	12	121.7	UniSTS
RH 2.0 Map	12	102.3	RGD
Cytogenetic Map	12	p11	UniSTS

RH138737

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	10,419,216 - 10,419,463 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	12,402,137 - 12,402,383	NCBI	Rnor6.0
Rnor_5.0	12	14,453,792 - 14,454,038	UniSTS	Rnor5.0
RGSC_v3.4	12	10,746,617 - 10,746,863	UniSTS	RGSC3.4
Celera	12	12,218,343 - 12,218,589	UniSTS
Cytogenetic Map	12	p11	UniSTS

AU048696

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	10,392,714 - 10,392,851 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	12,375,809 - 12,375,945	NCBI	Rnor6.0
Rnor_5.0	12	14,427,464 - 14,427,600	UniSTS	Rnor5.0
RGSC_v3.4	12	10,720,114 - 10,720,250	UniSTS	RGSC3.4
Celera	12	12,191,867 - 12,192,003	UniSTS
Cytogenetic Map	12	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC103478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001347 ⟹ ENSRNOP00000001347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	15,505,343 - 15,534,116 (+)	Ensembl
mRatBN7.2 Ensembl	12	10,391,696 - 10,419,611 (+)	Ensembl
Rnor_6.0 Ensembl	12	12,374,790 - 12,402,552 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	12,399,833 - 12,401,480 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092700

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	12,398,190 - 12,401,535 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	12,396,687 - 12,398,551 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	12,394,006 - 12,396,994 (+)	Ensembl

RefSeq Acc Id:

NM_001037191 ⟹ NP_001032268

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,505,354 - 15,533,285 (+)	NCBI
mRatBN7.2	12	10,391,696 - 10,419,627 (+)	NCBI
Dahl_SR_JrHsd	12	16,983,713 - 17,011,639 (+)	NCBI
Lyon_Normotensive	12	16,910,448 - 16,938,404 (+)	NCBI
Lyon_Hypertensive	12	15,761,504 - 15,789,460 (+)	NCBI
F344_StmMcwi	12	26,343,660 - 26,371,616 (+)	NCBI
Rnor_6.0	12	12,374,790 - 12,402,547 (+)	NCBI
Rnor_5.0	12	14,426,445 - 14,454,202 (+)	NCBI
RGSC_v3.4	12	10,719,095 - 10,747,027 (+)	RGD
Celera	12	12,190,848 - 12,218,752 (+)	RGD

Sequence:

show sequence

GTTCAGAAGCCTCCGCTGGGAACCCGCCCCGCCGGGCGTGGGCCCAGTGCTGCGGCCATGCCCA
CCTCCATGCTGTGGGCAGTGGACCTCTTCGGGAGAGTGTATACACTGTCAACGGCCGGTCAGTA
CTGGGAGCTGTGCAAGGATGTCCAGTTGGAGTTCAAGCGGGTCAGTGCGGCCACTCAGTGCTGC
TGGGGCATCGCCTGCGACAACCAGGTCTACTTATATGTGTGCTCCAGCGATGTGCCCATCCGTC
ACAGAGAGGAGGCCTATGAGAATCAGCGTTGGAACCCCATGGGAGGCTTCTGTGAGAAGCTCCT
GCCAAGTGACCGCTGGTCGTGGAGTGACGTGAGTGGGCTCCAGCATCGGCCGCTGGATGGCGTA
GCACTGCCTTCGCCATACTGGGAATGGGAGTCAGACTGGTACGTGGATGAGAATTTTGGAGGGG
AGCCCACCGAGAAAGGGGGGTGGACATACGCTATGGACTTCCCTGCTACCTACACTAGAGACAA
GAAATGGAATTCATGCGTGCGAAGGCGGAAGTGGATCCGGTATAGGAGATACAAATCCCGGGAC
ACCTGGGCCAAGATCCCCTCAAAGGATGACCCCAAGGAACTCCCTGACCCCTTCAATGATCTGT
CTGTAGGAGGGTGGGAGATCACAGAAGAACCTGTAGGCCGCCTGTCAGTGTGGGCTGTATCCTT
GCAGGGGAAGGTGTGGTACCGAGAGAACGTTAGCCACCCCAATCCAGAAGGTTCCTCCTGGTCT
CTTGTGGATACCCCAGGGGAAGTGGTCCAGATCAGCTGTGGGCCCCACGACCTTATATGGGCCA
CCCTCTGGGAGGGGCAGGCTCTGGTCAGAGAAGGAATCTGCAGGAACAACCCCAAAGGAAATTC
CTGGTCCATAGTGGAGCCTCCTGGGTCTGAAAATGGCATCATGCACGTCTCTGCGGGAGTCAGT
GTGGTCTGGGCCATCACAAAGGACCGCAAAGTGTGGTTCCGGAGGGGCGTCAACTCTCACAACC
CCTGTGGCACCAGCTGGATCGAGATGGTCGGAGAGATGACCATGGTGAACGTGGGGCTGAATGA
CCAGGTCTGGGGTATCAGCTGTGAGGACCGAGCTGTATACTTCCGGCAGGGTGTCACTCCCAGC
GAGCTCAGTGGGAAGACATGGAAGGCCATCGTCGTGGGCCGAGAAAGTGACCGGTCACACTCTG
GCAGCTCGTCCAGTCTCCTCAGTGCTGGCTGCTTCTTCGGCGAGGAGGTGAGGGGCAGTGGTAC
GGAATCTGCACCCAGTGACACCGATGCCTCCTCGGAAGTCGAGAGACAGGGCCCCGAACGGTCT
CTCCCCAAAGAATCTTTGGATAATTCCAGGAACCTTAAAGGAAGCTCGTCCAAGGGCCACGAGA
GCACCAGGAACACTGAGGACCCCATGGAGAACGCCTGCCTGGCTGAGGGCCAAGCAAAGGCTCC
CAAGACCTCTGGCCCTGATGAGTGCCATGGCCCAGCCCCCACGCCAGCTGAGCTGCCCTGGACC
AACATTGACCTAAAGGAGCCTAAGAAGGCGTCTAACCAGCCAGCTGCCGGCTTTCCTGAGACTT
CGGGCCTCTCCTCCCTAGGGCTGTTCCCGATGGGCATGGAAGAGCCCTATGGGGCAGACGACCA
TCCTCTGTGGGCCTGGGTGTCTGGAGGTGGATGTGCGGTGGAAGCGGGCTCTGCTCTCAAGTGG
TTCACTGTCCAGTCAGGCCTATCCCCCTCAGTGCAGACGTTGTCCCTGTCCATCACACCCGCCC
AGACCGCTGCCTGGAGGAAACAGATCTTCCAGCAGCTCACGGAGAGGACCAAGCGAGAGCTGGA
GAGCTTCAGACACTATGAACAGGCCGTAGAGCAGTCGGTGTGGGTGAAGACGGGGGCCCTGCAG
TGGTGGTGCGACTGGAAGCCCCACAAGTGGGTGGACGTCCGTGTGGCCCTGGAGCAGTTCACAG
GGCATGACGGGGCTCGAGACAGCATCCTCTTCATCTATTACGTGGTCCATGAGGAAAAGAAGTA
CCTACACGTGTTCCTGAATGAGGTGACCGTGCTGGTCCCCGTGCTTAATGAAGCCAAGCACTCC
TTTGCCCTCTACACCCCCGAAAGGACCAGACAGAGGTGGCCCGTACGCCTGGCTGCCACCACTG
AGCAAGACATGAATGACTGGCTTACCCTGCTCAGCCTGTCCTGCTGCGAGAGCCGGAAGGTCCA
CGGACGCCCGTCCCTGCAGGCCATCTGGTCTGTCACTTGCAAGGGTGACATCTTTGTGAGTGAG
CCCAGCCCAGACCTGGAAGCCCATGAGCACCTGCTACCCTGCGACCAGATGTTCTGGCGACAGA
TGGGAGGCCACCTGCGGATCATAGAGGCCAACAGCCGAGGCGTGGTGTGGGGCATCGGCTATGA
TCACACAGCATGGGTGTACACAGGCGGCTATGGCGGAGGCTGCTTCCAAGGCCTGGCCAGCAGC
ACCAGCAACATTTATACACAGTCGGACGTGAAGAGCGTCTACATCTATGAGAACCAGCGTTGGA
ACCCTGTCACGGGCTATACCAGCAGGGGTCTGCCCACTGACCGGTACATGTGGAGTGATGTCAC
AGGGCTACAAGAATGCACCAAGGCCGGCACAAAGCCCCCATCCCTGCAGTGGACTTGGGTTTCT
GACTGGTATGTGGACTTCAGTGTCCTCGGAGGCACCGATCAGGAAGGATGGCAGTACGCCAGTG
ATTTCCCTGCCTCTTACCACGGGTACAAAACCATGAAGGATTTTGTCAGGAGAAGGTGCTGGGC
CAGAAAATGCAAGCTGGTGACCAGCGGGCCGTGGCTGGAGGTGGCCCCCATCGCCCTCAGCGAT
GTGTCCATCATCCCCGAGAGTGCAGATGCTAATGGGAGAGGACACAATATTGCACTGTGGGCCG
TCAGTGACAAGGGGGACGTCCTGTGCCGCCTGGGTGTGTCTGAACTCAACCCTGCGGGCTCCTC
CTGGCTGCATGTGGGCACTGACCAGCCCTTTGCCTCTGTCTCTATCGGAGCCTGCTATCAGGTG
TGGGCTGTGGCCAGGGATGGCTCTGCATTCTACCGGGGCTCTGTGTCTCCTTCCCAGCCAGCTG
GTGACTGCTGGTACCACATCCCATCTCCTCCCAAGCAGAAGCTCACACAAGTGTCTGTGGGCCA
GACATCAGTTTATGCCTTGGATGAAAACGGGAACCTGTGGTACCGAGCAGGGATCACCCCCAGC
TACCCGCAGGGCTCCAGCTGGGAGCACGTGTCCAACAATGTACGCAAAGTGTCTGTGGGGCCAC
TGGACCAGGTCTGGGTGATTGCCAACAAAGTCCAGGGGAGCCATGGCCTGAGCCGGGGAACAGT
GTGTCGTCGCATGGGTGTCCAGCCTCGGGAGCCCAAGGGACAGGGCTGGGACTATGGCATTGGT
GGAGGCTGGGACCACATCTCTGTCCGGGCCAATGCCACCAGGGCACCGAGGAACATGTCCAGGG
ATCAGGAGGCCCATGGCCCAGGTCCTGTTTGCTGCTGAGGCCACTCCTCACCTGGAGGCAAGGA
CGGTTTGAGCCTGAAGGACCAGAACTGAGCCTTTCTTGTGCAGTATGGGAGGGCATCACCCAGG
GCCCCACACACAGGGAGTCAGGTCAGAGTCAGCCATTTCTGCAGCACCGGCAAGAATGCCAGAG
GATGAAACTGTGGGGGCGCTGAGTTTGTGAGGGATGCTGTAGGGAAGAGCCAAGATGACAATTC
TGTGGGTCCCCTGAGCCCCGGTCTCTGCCTGCAATACCTCCCACCTTTCCAGGCCAGGAACTCA
GAGCCCTCTAGAAATTCTGGTCCTGAGAGGCAGAGGCAGGGGAGGACCTTCCACACCTGGAGAC
CCCAAATCACCTCCAGGAGAAATAGCTCTGAGGTTCAGGTCTACAGGCCTCAGTCTGGCCATTC
CTCAGCAGGGTTTCCTGAGGGAGTTTTTGCTTCAAAAGAAGCAAAGGGCTCGATGCCTGTAGGC
CTGGCACTCAGGAGACTGAGGCAGGCGAATGGTGAGTCTGAGACTACCCAGGACGACATAGCAA
GACAGTCACAAAAATAAATATCTAGATAAGCAAACCAGGCATGAAGGTGCATGTCTGTACTCCA
AAGCTGAGGGCAAGGTCAGAAGTTCAAGAGCATCCTCAGACTCCAGAGTAAATTTGGCCAGCCT
GGGCTACATAAGACCCTGCTTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017598316 ⟹ XP_017453805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,505,295 - 15,534,541 (+)	NCBI
mRatBN7.2	12	10,391,633 - 10,420,462 (+)	NCBI
Rnor_6.0	12	12,374,132 - 12,403,382 (+)	NCBI

Sequence:

show sequence

ACCCCCTCCCACCCGCCCCAGGGAAGGAATTCTTGCAACAAAGTGGGAGGAAGACATCAGTATA
TCCAGTGATATTATCACACATCAGCATTAATATTATGTTCCATCTATCTAGGTCGTAGAGACTG
AGCAATAAATACCCTGACGCCCTGGCACAGTCACAAAAGTCACGTTTCTCTCACTCCTCCCCAA
AGGAGAAAAGTCCATCCTCAAGGGCTACTGTCTAGCCCCGAGGGACCCATCGAGTCACGTGTCC
TCACGGGTCCCGGGCCAAGCGCGTCCTTACACGCCGGCAATTCCTCAGGGCACCGCTTCCTGCG
TTCCAGCATTCTCTTTCCTCTTCCTCCTCCTCGCGTCTACACCGGCCTGCACTGCTCCCGAAGC
GGAGCCCCGAGAGAGCGGACGCAGCAACCGCACCTTCCTTCCTCAGTCGCAGAGAGCGACCGGC
TAGCTGGACCCGGCGCGACCTCGAGAGTGCGCACGCGCGCCGTCTGTCCCCGAGCGGGCGAGAT
CGCCGCTGAGCGCAGCAGTCAATCGTGAGCTCCCAGGCAGTTGCGTCACTCCGAGTCTGGCCAA
TCAGCGCTGAATCGATTATTGCTTCCGGCCCGCCCTCTCGCCTGAGGCCGGGGGAGGACCCGAC
TGTAGCTAAAGCCTTGGAGTTCAGAAGCCTCGGCTGGGAACCCGCCCCGCCGGGCGTGGGCCCA
GCGCTTCGTGGTCAAGCAGAGGTTGCTGCCAGAGGATATGTTCCCTCTGTCCCTTCACTTCCGT
GAAACAAAGATATTCCTGAATCACAAGACCTCCACACATCCACTTCAAGAGTCCTGTGACCCAG
TGACCCAAGCGAGGTTTCGTGGTGATCTCACAGGAAGTGGCGTGTGACAAGTCAGGGGACATCC
CGTGGAGGCAGAAAGAAGCTGTGGTTGGCCAAGGCTGTTTAGCCTGTATGGCCTTTACCTCAGT
GCTGCGGCCATGCCCACCTCCATGCTGTGGGCAGTGGACCTCTTCGGGAGAGTGTATACACTGT
CAACGGCCGGTCAGTACTGGGAGCTGTGCAAGGATGTCCAGTTGGAGTTCAAGCGGGTCAGTGC
GGCCACTCAGTGCTGCTGGGGCATCGCCTGCGACAACCAGGTCTACTTATATGTGTGCTCCAGC
GATGTGCCCATCCGTCACAGAGAGGAGGCCTATGAGAATCAGCGTTGGAACCCCATGGGAGGCT
TCTGTGAGAAGCTCCTGCCAAGTGACCGCTGGTCGTGGAGTGACGTGAGTGGGCTCCAGCATCG
GCCGCTGGATGGCGTAGCACTGCCTTCGCCATACTGGGAATGGGAGTCAGACTGGTACGTGGAT
GAGAATTTTGGAGGGGAGCCCACCGAGAAAGGGGGGTGGACATACGCTATGGACTTCCCTGCTA
CCTACACTAGAGACAAGAAATGGAATTCATGCGTGCGAAGGCGGAAGTGGATCCGGTATAGGAG
ATACAAATCCCGGGACACCTGGGCCAAGATCCCCTCAAAGGATGACCCCAAGGAACTCCCTGAC
CCCTTCAATGATCTGTCTGTAGGAGGGTGGGAGATCACAGAAGAACCTGTAGGCCGCCTGTCAG
TGTGGGCTGTATCCTTGCAGGGGAAGGTGTGGTACCGAGAGAACGTTAGCCACCCCAATCCAGA
AGGTTCCTCCTGGTCTCTTGTGGATACCCCAGGGGAAGTGGTCCAGATCAGCTGTGGGCCCCAC
GACCTTATATGGGCCACCCTCTGGGAGGGGCAGGCTCTGGTCAGAGAAGGAATCTGCAGGAACA
ACCCCAAAGGAAATTCCTGGTCCATAGTGGAGCCTCCTGGGTCTGAAAATGGCATCATGCACGT
CTCTGCGGGAGTCAGTGTGGTCTGGGCCATCACAAAGGACCGCAAAGTGTGGTTCCGGAGGGGC
GTCAACTCTCACAACCCCTGTGGCACCAGCTGGATCGAGATGGTCGGAGAGATGACCATGGTGA
ACGTGGGGCTGAATGACCAGGTCTGGGGTATCAGCTGTGAGGACCGAGCTGTATACTTCCGGCA
GGGTGTCACTCCCAGCGAGCTCAGTGGGAAGACATGGAAGGCCATCGTCGTGGGCCGAGAAAGT
GACCGGTCACACTCTGGCAGCTCGTCCAGTCTCCTCAGTGCTGGCTGCTTCTTCGGCGAGGAGG
TGAGGGGCAGTGGTACGGAATCTGCACCCAGTGACACCGATGCCTCCTCGGAAGTCGAGAGACA
GGGCCCCGAACGGTCTCTCCCCAAAGAATCTTTGGATAATTCCAGGAACCTTAAAGGAAGCTCG
TCCAAGGGCCACGAGAGCACCAGGAACACTGAGGACCCCATGGAGAACGCCTGCCTGGCTGAGG
GCCAAGCAAAGGCTCCCAAGACCTCTGGCCCTGATGAGTGCCATGGCCCAGCCCCCACGCCAGC
TGAGCTGCCCTGGACCAACATTGACCTAAAGGAGCCTAAGAAGGCGTCTAACCAGCCAGCTGCC
GGCTTTCCTGAGACTTCGGGCCTCTCCTCCCTAGGGCTGTTCCCGATGGGCATGGAAGAGCCCT
ATGGGGCAGACGACCATCCTCTGTGGGCCTGGGTGTCTGGAGGTGGATGTGCGGTGGAAGCGGG
CTCTGCTCTCAAGTGGTTCACTGTCCAGTCAGGCCTATCCCCCTCAGTGCAGACGTTGTCCCTG
TCCATCACACCCGCCCAGACCGCTGCCTGGAGGAAACAGATCTTCCAGCAGCTCACGGAGAGGA
CCAAGCGAGAGCTGGAGAGCTTCAGACACTATGAACAGGCCGTAGAGCAGTCGGTGTGGGTGAA
GACGGGGGCCCTGCAGTGGTGGTGCGACTGGAAGCCCCACAAGTGGGTGGACGTCCGTGTGGCC
CTGGAGCAGTTCACAGGGCATGACGGGGCTCGAGACAGCATCCTCTTCATCTATTACGTGGTCC
ATGAGGAAAAGAAGTACCTACACGTGTTCCTGAATGAGGTGACCGTGCTGGTCCCCGTGCTTAA
TGAAGCCAAGCACTCCTTTGCCCTCTACACCCCCGAAAGGACCAGACAGAGGTGGCCCGTACGC
CTGGCTGCCACCACTGAGCAAGACATGAATGACTGGCTTACCCTGCTCAGCCTGTCCTGCTGCG
AGAGCCGGAAGGTCCACGGACGCCCGTCCCTGCAGGCCATCTGGTCTGTCACTTGCAAGGGTGA
CATCTTTGTGAGTGAGCCCAGCCCAGACCTGGAAGCCCATGAGCACCTGCTACCCTGCGACCAG
ATGTTCTGGCGACAGATGGGAGGCCACCTGCGGATCATAGAGGCCAACAGCCGAGGCGTGGTGT
GGGGCATCGGCTATGATCACACAGCATGGGTGTACACAGGCGGCTATGGCGGAGGCTGCTTCCA
AGGCCTGGCCAGCAGCACCAGCAACATTTATACACAGTCGGACGTGAAGAGCGTCTACATCTAT
GAGAACCAGCGTTGGAACCCTGTCACGGGCTATACCAGCAGGGGTCTGCCCACTGACCGGTACA
TGTGGAGTGATGTCACAGGGCTACAAGAATGCACCAAGGCCGGCACAAAGCCCCCATCCCTGCA
GTGGACTTGGGTTTCTGACTGGTATGTGGACTTCAGTGTCCTCGGAGGCACCGATCAGGAAGGA
TGGCAGTACGCCAGTGATTTCCCTGCCTCTTACCACGGGTACAAAACCATGAAGGATTTTGTCA
GGAGAAGGTGCTGGGCCAGAAAATGCAAGCTGGTGACCAGCGGGCCGTGGCTGGAGGTGGCCCC
CATCGCCCTCAGCGATGTGTCCATCATCCCCGAGAGTGCAGATGCTAATGGGAGAGGACACAAT
ATCGCACTGTGGGCCGTCAGTGACAAGGGGGACGTCCTGTGCCGCCTGGGTGTGTCTGAACTCA
ACCCTGCGGGCTCCTCCTGGCTGCATGTGGGCACTGACCAGCCCTTTGCCTCTGTCTCTATCGG
AGCCTGCTATCAGGTGTGGGCTGTGGCCAGGGATGGCTCTGCATTCTACCGGGGCTCTGTGTCT
CCTTCCCAGCCAGCTGGTGACTGCTGGTACCACATCCCATCTCCTCCCAAGCAGAAGCTCACAC
AAGTGTCTGTGGGCCAGACATCAGTTTATGCCTTGGATGAAAACGGGAACCTGTGGTACCGAGC
AGGGATCACCCCCAGCTACCCGCAGGGCTCCAGCTGGGAGCACGTGTCCAACAATGTGCGCAAA
GTGTCTGTGGGGCCACTGGACCAGGTCTGGGTGATTGCCAACAAAGTCCAGGGGAGCCATGGCC
TGAGCCGGGGAACAGTGTGTCGTCGCATGGGTGTCCAGCCTCGGGAGCCCAAGGGACAGGGCTG
GGACTATGGCATTGGTGGAGGCTGGGACCACATCTCTGTCCGGGCCAATGCCACCAGGGCACCG
AGGAACATGTCCAGGGATCAGGAGGCCCATGGCCCAGGTCCTGTTTGCTGCTGAGGCCACTCCT
CACCTGGAGGCAAGGACGGTTTGAGCCTGAAGGACCAGAACTGAGCCTTTCTTGTGCAGTATGG
GAGGGCATCACCCAGGGCCCCACACACAGGGAGTCAGGTCAGAGTCAGCCATTTCTGCAGCACC
GGCAAGAATGCCAGAGGATGAAACTGTGGGGGCGCTGAGTTTGTGAGGGATGCTGTAGGGAAGA
GCCAAGATGACAATTCTGTGGGTCCCCTGAGCCCCGGTCTCTGCCTGCAATACCTCCCACCTTT
CCAGGCCAGGAACTCAGAGCCCTCTAGAAATTCTGGTCCTGAGAGGCAGAGGCAGGGGAGGACC
TTCCACACCTGGAGACCCCAAATCACCTCCAGGAGAAATAGCTCTGAGGTTCAGGTCTACAGGC
CTCAGTCTGGCCATTCCTCAGCAGGGTTTCCTGAGGGAGTTTTTGCTTCAAAAGAAGCAAAGGG
CTCGATGCCTGTAGGCCTGGCACTCAGGAGACTGAGGCAGGCGAATGGTGAGTCTGAGACTACC
CAGGACGACATAGCAAGACAGTCACAAAAATAAATATCTAGATAAGCAAACCAGGCATGAAGGT
GCATGTCTGTACTCCAAAGCTGAGGGCAAGGTCAGAAGTTCAAGAGCATCCTCAGACTCCAGAG
TAAATTTGGCCAGCCTGGGCTACATAAGACCCTGCTTCAAGAAAAAAAAAAAAACAAGATGGAG
AGAGGCTAGCCTGGGCTATATAAAATCCTGCCTCAAAAAACAAGACGGGTATCCTGTTGGTTTG
GGGTTCCCTCCTGTGGTGCACTGGAAAGTAATTTCCTTTTAGGGAATCACGGTTATGAACCCCA
GTTTAGCCCCTCTTTTAGATAAGGAGGCAGGGCCTCTATGCACAGGATTGTGTTGCAAGGTGTA
CAGGTCTAGGGGGGAGGCAGCTGGCACCCTGGACTTGAAGGAAGAAATCTGTGCCCTGTGGAGA
GGGTCTGGCCTGAACCCCAGGCTTTCTTGTGCTCCCTAGCTGGAGCCCCAAGATGTGAATGCTA
GCCTGCCTGGCGTGGCCTAACTAAGCACGGCCCATGGCAAAAGTGTGCCCCAGCAGGCGACGTC
TCATGTTTCAGACACTGCCCATGAGTACAGAGCCAAGCCCGTCTCCACTAACTTTGAGACAGGA
CGGACCCCCCTGACTGGTTTGCCCTGGAATCCTCCCTGTGTGATGTGTTCGGGAGGGGGTATCC
CTAGAAGTTAAGAGGAAACTACTCTGGGGTCCCATCCCAAGGACATAGTGGTCCCTCATCCTCC
ACCAGACATACCCATGTGCAGAGAGGCGCCAAGGGGTCTCCCTCATGTCAGTGTTGGGATTCCA
AGGGGACATCCGGGTTTGTCCCCAGCAACTGTGACCTGTGTGTTCTGCACATGGTTCTCAGCTG
AGGACCGGCAGTGTCACCAGGGTGATGAATCCTCTCTCTGAGCACCAACTGTTCACCCCCTCAG
TGGCACCCAACTCTTTAGGCTCCCCAGATGTTCTATTTAATAAAAATTTATACCACA

hide sequence

RefSeq Acc Id:

XM_039089350 ⟹ XP_038945278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,516,445 - 15,534,541 (+)	NCBI
mRatBN7.2	12	10,402,790 - 10,420,462 (+)	NCBI

RefSeq Acc Id:

XM_039089351 ⟹ XP_038945279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,515,356 - 15,534,541 (+)	NCBI
mRatBN7.2	12	10,401,703 - 10,420,462 (+)	NCBI

RefSeq Acc Id:

XR_005491622

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,504,456 - 15,524,901 (+)	NCBI
mRatBN7.2	12	10,391,587 - 10,411,243 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032268	(Get FASTA)	NCBI Sequence Viewer
	XP_017453805	(Get FASTA)	NCBI Sequence Viewer
	XP_038945278	(Get FASTA)	NCBI Sequence Viewer
	XP_038945279	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI03479	(Get FASTA)	NCBI Sequence Viewer
	EDL89637	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001347
	ENSRNOP00000001347.5
GenBank Protein	Q3ZBA0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001032268 ⟸ NM_001037191

- UniProtKB:

Q3ZBA0 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPTSMLWAVDLFGRVYTLSTAGQYWELCKDVQLEFKRVSAATQCCWGIACDNQVYLYVCSSDVP
IRHREEAYENQRWNPMGGFCEKLLPSDRWSWSDVSGLQHRPLDGVALPSPYWEWESDWYVDENF
GGEPTEKGGWTYAMDFPATYTRDKKWNSCVRRRKWIRYRRYKSRDTWAKIPSKDDPKELPDPFN
DLSVGGWEITEEPVGRLSVWAVSLQGKVWYRENVSHPNPEGSSWSLVDTPGEVVQISCGPHDLI
WATLWEGQALVREGICRNNPKGNSWSIVEPPGSENGIMHVSAGVSVVWAITKDRKVWFRRGVNS
HNPCGTSWIEMVGEMTMVNVGLNDQVWGISCEDRAVYFRQGVTPSELSGKTWKAIVVGRESDRS
HSGSSSSLLSAGCFFGEEVRGSGTESAPSDTDASSEVERQGPERSLPKESLDNSRNLKGSSSKG
HESTRNTEDPMENACLAEGQAKAPKTSGPDECHGPAPTPAELPWTNIDLKEPKKASNQPAAGFP
ETSGLSSLGLFPMGMEEPYGADDHPLWAWVSGGGCAVEAGSALKWFTVQSGLSPSVQTLSLSIT
PAQTAAWRKQIFQQLTERTKRELESFRHYEQAVEQSVWVKTGALQWWCDWKPHKWVDVRVALEQ
FTGHDGARDSILFIYYVVHEEKKYLHVFLNEVTVLVPVLNEAKHSFALYTPERTRQRWPVRLAA
TTEQDMNDWLTLLSLSCCESRKVHGRPSLQAIWSVTCKGDIFVSEPSPDLEAHEHLLPCDQMFW
RQMGGHLRIIEANSRGVVWGIGYDHTAWVYTGGYGGGCFQGLASSTSNIYTQSDVKSVYIYENQ
RWNPVTGYTSRGLPTDRYMWSDVTGLQECTKAGTKPPSLQWTWVSDWYVDFSVLGGTDQEGWQY
ASDFPASYHGYKTMKDFVRRRCWARKCKLVTSGPWLEVAPIALSDVSIIPESADANGRGHNIAL
WAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQPFASVSIGACYQVWAVARDGSAFYRGSVSPSQ
PAGDCWYHIPSPPKQKLTQVSVGQTSVYALDENGNLWYRAGITPSYPQGSSWEHVSNNVRKVSV
GPLDQVWVIANKVQGSHGLSRGTVCRRMGVQPREPKGQGWDYGIGGGWDHISVRANATRAPRNM
SRDQEAHGPGPVCC

hide sequence

RefSeq Acc Id:	XP_017453805 ⟸ XM_017598316
- Peptide Label:	isoform X1
- UniProtKB:	Q3ZBA0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPTSMLWAVDLFGRVYTLSTAGQYWELCKDVQLEFKRVSAATQCCWGIACDNQVYLYVCSSDVP IRHREEAYENQRWNPMGGFCEKLLPSDRWSWSDVSGLQHRPLDGVALPSPYWEWESDWYVDENF GGEPTEKGGWTYAMDFPATYTRDKKWNSCVRRRKWIRYRRYKSRDTWAKIPSKDDPKELPDPFN DLSVGGWEITEEPVGRLSVWAVSLQGKVWYRENVSHPNPEGSSWSLVDTPGEVVQISCGPHDLI WATLWEGQALVREGICRNNPKGNSWSIVEPPGSENGIMHVSAGVSVVWAITKDRKVWFRRGVNS HNPCGTSWIEMVGEMTMVNVGLNDQVWGISCEDRAVYFRQGVTPSELSGKTWKAIVVGRESDRS HSGSSSSLLSAGCFFGEEVRGSGTESAPSDTDASSEVERQGPERSLPKESLDNSRNLKGSSSKG HESTRNTEDPMENACLAEGQAKAPKTSGPDECHGPAPTPAELPWTNIDLKEPKKASNQPAAGFP ETSGLSSLGLFPMGMEEPYGADDHPLWAWVSGGGCAVEAGSALKWFTVQSGLSPSVQTLSLSIT PAQTAAWRKQIFQQLTERTKRELESFRHYEQAVEQSVWVKTGALQWWCDWKPHKWVDVRVALEQ FTGHDGARDSILFIYYVVHEEKKYLHVFLNEVTVLVPVLNEAKHSFALYTPERTRQRWPVRLAA TTEQDMNDWLTLLSLSCCESRKVHGRPSLQAIWSVTCKGDIFVSEPSPDLEAHEHLLPCDQMFW RQMGGHLRIIEANSRGVVWGIGYDHTAWVYTGGYGGGCFQGLASSTSNIYTQSDVKSVYIYENQ RWNPVTGYTSRGLPTDRYMWSDVTGLQECTKAGTKPPSLQWTWVSDWYVDFSVLGGTDQEGWQY ASDFPASYHGYKTMKDFVRRRCWARKCKLVTSGPWLEVAPIALSDVSIIPESADANGRGHNIAL WAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQPFASVSIGACYQVWAVARDGSAFYRGSVSPSQ PAGDCWYHIPSPPKQKLTQVSVGQTSVYALDENGNLWYRAGITPSYPQGSSWEHVSNNVRKVSV GPLDQVWVIANKVQGSHGLSRGTVCRRMGVQPREPKGQGWDYGIGGGWDHISVRANATRAPRNM SRDQEAHGPGPVCC hide sequence

Ensembl Acc Id:

ENSRNOP00000001347 ⟸ ENSRNOT00000001347

RefSeq Acc Id:	XP_038945279 ⟸ XM_039089351
- Peptide Label:	isoform X3
- UniProtKB:	A6K1H9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945278 ⟸ XM_039089350
- Peptide Label:	isoform X2
- UniProtKB:	A6K1H9 (UniProtKB/TrEMBL)

Protein Domains

Peroxin/Ferlin PH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3ZBA0-F1-model_v2	AlphaFold	Q3ZBA0	1-1166	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698426

Promoter ID:

EPDNEW_R8951

Type:

initiation region

Name:

Tecpr1_1

Description:

tectonin beta-propeller repeat containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	12,374,742 - 12,374,802	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306873	AgrOrtholog
BioCyc Gene	G2FUF-20032	BioCyc
Ensembl Genes	ENSRNOG00000001010	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001347	ENTREZGENE
	ENSRNOT00000001347.8	UniProtKB/Swiss-Prot
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7937275	IMAGE-MGC_LOAD
InterPro	Beta-propeller_rpt_TECPR	UniProtKB/Swiss-Prot
	Peroxin	UniProtKB/Swiss-Prot
	Peroxin/Ferlin	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	Tectonin_beta-propeller	UniProtKB/Swiss-Prot
KEGG Report	rno:304285	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124730	IMAGE-MGC_LOAD
NCBI Gene	304285	ENTREZGENE
PANTHER	DYSFERLIN-RELATED	UniProtKB/Swiss-Prot
	TECTONIN BETA-PROPELLER REPEAT-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	Hyd_WA	UniProtKB/Swiss-Prot
	Pex24p	UniProtKB/Swiss-Prot
	Tectonin	UniProtKB/Swiss-Prot
PhenoGen	Tecpr1	PhenoGen
RatGTEx	ENSRNOG00000001010	RatGTEx
SMART	DysFC	UniProtKB/Swiss-Prot
	DysFN	UniProtKB/Swiss-Prot
	TECPR	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
UniProt	A6K1H9	ENTREZGENE, UniProtKB/TrEMBL
	Q3ZBA0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-06-12	Tecpr1	tectonin beta-propeller repeat containing 1	RGD1306873	similar to RIKEN cDNA 2210010N04 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306873	similar to RIKEN cDNA 2210010N04 gene	RGD1306873_predicted	similar to RIKEN cDNA 2210010N04 gene (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306873_predicted	similar to RIKEN cDNA 2210010N04 gene (predicted)	LOC304285_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC304285_predicted	similar to RIKEN cDNA 2210010N04 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar