Rpl36a (ribosomal protein L36A) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rpl36a (ribosomal protein L36A) Rattus norvegicus
Analyze
Symbol: Rpl36a
Name: ribosomal protein L36A
RGD ID: 1306640
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to act upstream of or within response to retinoic acid. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human RPL36A (ribosomal protein L36a); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L36a; 60S ribosomal protein L44; large ribosomal subunit protein eL42; LOC292964; MGC188784
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl36al-ps1   Rpl36al-ps2   Rpl36al-ps4   Rpl36al-ps5  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X102,058,573 - 102,062,162 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2022,034,086 - 22,034,406 (-)EnsemblGRCr8
mRatBN7.2X97,766,179 - 97,768,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2022,035,300 - 22,035,620 (-)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX97,766,179 - 97,768,892 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX99,440,394 - 99,443,107 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02146,639,518 - 146,639,910 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X100,453,543 - 100,456,256 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X105,402,867 - 105,405,580 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,402,867 - 105,405,580 (+)Ensemblrn6Rnor6.0
Rnor_5.0X105,292,221 - 105,294,934 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X122,041,847 - 122,044,560 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX98,806,721 - 98,809,434 (+)NCBICelera
RGSC_v3.1X122,115,317 - 122,117,940 (+)NCBI
Cytogenetic MapXq32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (ISO)
inulin  (ISO)
lead(0)  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
sodium arsenite  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
tolcapone  (EXP)
toluene  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'. Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.
Additional References at PubMed
PMID:3396452   PMID:12477932   PMID:12962325   PMID:15489334   PMID:22681889   PMID:25957688  


Genomics

Comparative Map Data
Rpl36a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X102,058,573 - 102,062,162 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2022,034,086 - 22,034,406 (-)EnsemblGRCr8
mRatBN7.2X97,766,179 - 97,768,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2022,035,300 - 22,035,620 (-)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX97,766,179 - 97,768,892 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX99,440,394 - 99,443,107 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02146,639,518 - 146,639,910 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X100,453,543 - 100,456,256 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X105,402,867 - 105,405,580 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,402,867 - 105,405,580 (+)Ensemblrn6Rnor6.0
Rnor_5.0X105,292,221 - 105,294,934 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X122,041,847 - 122,044,560 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX98,806,721 - 98,809,434 (+)NCBICelera
RGSC_v3.1X122,115,317 - 122,117,940 (+)NCBI
Cytogenetic MapXq32NCBI
RPL36A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X101,391,011 - 101,396,155 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,390,824 - 101,396,155 (+)Ensemblhg38GRCh38
GRCh37X100,645,999 - 100,651,143 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X100,532,604 - 100,537,439 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X100,452,088 - 100,457,068NCBI
CeleraX101,165,405 - 101,170,242 (+)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,452,171 - 90,457,437 (+)NCBIHuRef
CHM1_1X100,539,358 - 100,544,623 (+)NCBICHM1_1
T2T-CHM13v2.0X99,835,123 - 99,840,269 (+)NCBIT2T-CHM13v2.0
Rpl36a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,486,403 - 133,488,811 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,486,403 - 133,488,811 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X134,585,654 - 134,588,062 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,585,654 - 134,588,062 (+)Ensemblmm10GRCm38
MGSCv37X131,120,193 - 131,122,601 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X129,932,035 - 129,934,410 (+)NCBIMGSCv36mm8
CeleraX117,465,238 - 117,467,646 (+)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.2NCBI
Rpl36a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555037,520,530 - 7,523,593 (+)NCBIChiLan1.0ChiLan1.0
RPL36A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X100,990,209 - 100,995,146 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X100,993,869 - 100,998,751 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X90,593,495 - 90,598,380 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X100,725,528 - 100,730,507 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX100,725,528 - 100,730,505 (+)EnsemblpanPan2panpan1.1
LOC102155800
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11752,628,292 - 52,628,713 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1752,275,569 - 52,275,982 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01753,506,340 - 53,506,753 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11752,540,344 - 52,540,757 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01752,582,823 - 52,583,236 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01753,155,905 - 53,156,319 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl36a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X63,004,438 - 63,007,625 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936813467,505 - 470,600 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936813467,505 - 470,673 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL36A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X89,731,684 - 89,736,393 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX89,731,725 - 89,736,338 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606514,651,257 - 14,656,032 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl36a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X86,890,983 - 86,893,634 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl36a
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:121
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000057222
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X80434318125434318Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX92979612117740458Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat

Markers in Region
RH140281  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X97,768,844 - 97,768,996 (+)MAPPERmRatBN7.2
Rnor_6.0X105,405,533 - 105,405,684NCBIRnor6.0
Rnor_5.0X105,294,887 - 105,295,038UniSTSRnor5.0
RGSC_v3.4X122,044,513 - 122,044,664UniSTSRGSC3.4
CeleraX98,809,387 - 98,809,538UniSTS
Cytogenetic MapXq34UniSTS
RH130891  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X102,062,296 - 102,062,483 (+)Marker Load Pipeline
mRatBN7.2X97,769,026 - 97,769,213 (+)MAPPERmRatBN7.2
Rnor_6.0X105,405,715 - 105,405,901NCBIRnor6.0
Rnor_5.0X105,295,069 - 105,295,255UniSTSRnor5.0
RGSC_v3.4X122,044,695 - 122,044,881UniSTSRGSC3.4
CeleraX98,809,569 - 98,809,755UniSTS
RH 3.4 Map1942.6UniSTS
Cytogenetic MapXq34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 26 107 219 117 126 85 108 85 476 250 11 202 109 121 41 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000047773   ⟹   ENSRNOP00000042127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2022,034,086 - 22,034,406 (-)Ensembl
mRatBN7.2 Ensembl2022,035,300 - 22,035,620 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000057222   ⟹   ENSRNOP00000054048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX97,766,179 - 97,768,892 (+)Ensembl
Rnor_6.0 EnsemblX105,402,867 - 105,405,580 (+)Ensembl
RefSeq Acc Id: NM_001128065   ⟹   NP_001121537
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,059,449 - 102,062,162 (+)NCBI
mRatBN7.2X97,766,179 - 97,768,892 (+)NCBI
Rnor_6.0X105,402,867 - 105,405,580 (+)NCBI
Rnor_5.0X105,292,221 - 105,294,934 (+)NCBI
RGSC_v3.4X122,041,847 - 122,044,560 (+)RGD
CeleraX98,806,721 - 98,809,434 (+)RGD
Sequence:
RefSeq Acc Id: XM_063279829   ⟹   XP_063135899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,059,492 - 102,061,909 (+)NCBI
RefSeq Acc Id: XM_063279830   ⟹   XP_063135900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,059,492 - 102,061,909 (+)NCBI
RefSeq Acc Id: XM_063279831   ⟹   XP_063135901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,058,573 - 102,061,909 (+)NCBI
RefSeq Acc Id: NP_001121537   ⟸   NM_001128065
- UniProtKB: P83883 (UniProtKB/Swiss-Prot),   B2RYQ8 (UniProtKB/TrEMBL),   F8WFR5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054048   ⟸   ENSRNOT00000057222
RefSeq Acc Id: XP_063135901   ⟸   XM_063279831
- Peptide Label: isoform X3
- UniProtKB: F8WFR5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135899   ⟸   XM_063279829
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135900   ⟸   XM_063279830
- Peptide Label: isoform X2
- UniProtKB: F8WFR5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000042127   ⟸   ENSRNOT00000047773

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P83883-F1-model_v2 AlphaFold P83883 1-106 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701934
Promoter ID:EPDNEW_R12458
Type:multiple initiation site
Name:Rpl36al_1
Description:ribosomal protein L36a-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X105,402,886 - 105,402,946EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306640 AgrOrtholog
BioCyc Gene G2FUF-1681 BioCyc
Ensembl Genes ENSRNOG00000011494 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000031315 UniProtKB/Swiss-Prot
  ENSRNOG00000032408 Ensembl
  ENSRNOG00000075816 ENTREZGENE
Ensembl Transcript ENSRNOT00000043171.3 UniProtKB/Swiss-Prot
  ENSRNOT00000057222.3 UniProtKB/Swiss-Prot
  ENSRNOT00000149159 ENTREZGENE
Gene3D-CATH 3.10.450.80 UniProtKB/Swiss-Prot
InterPro Ribosomal_L44e UniProtKB/Swiss-Prot
  Ribosomal_LSU_eL42 UniProtKB/Swiss-Prot
  Ribosomal_zn-bd UniProtKB/Swiss-Prot
KEGG Report rno:292964 UniProtKB/Swiss-Prot
  rno:81769 UniProtKB/Swiss-Prot
NCBI Gene 292964 ENTREZGENE
PANTHER PTHR10369 UniProtKB/Swiss-Prot
Pfam Ribosomal_L44 UniProtKB/Swiss-Prot
PhenoGen Rpl36a PhenoGen
PROSITE RIBOSOMAL_L44E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011494 RatGTEx
  ENSRNOG00000031315 RatGTEx
  ENSRNOG00000032408 RatGTEx
  ENSRNOG00000075816 RatGTEx
Superfamily-SCOP SSF57829 UniProtKB/Swiss-Prot
UniProt A0ABK0M946_RAT UniProtKB/TrEMBL
  B2RYQ8 ENTREZGENE, UniProtKB/TrEMBL
  F8WFR5 ENTREZGENE, UniProtKB/TrEMBL
  P83883 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P09896 UniProtKB/Swiss-Prot
  P10661 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-07 Rpl36a  ribosomal protein L36A  Rpl36a  ribosomal protein L36a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rpl36a  ribosomal protein L36a   Rpl36a_predicted  ribosomal protein L36a (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rpl36a_predicted  ribosomal protein L36a (predicted)      Symbol and Name status set to approved 70820 APPROVED