Sh3yl1 (SH3 and SYLF domain containing 1) - Rat Genome Database

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Gene: Sh3yl1 (SH3 and SYLF domain containing 1) Rattus norvegicus
Analyze
Symbol: Sh3yl1
Name: SH3 and SYLF domain containing 1
RGD ID: 1306440
Description: Predicted to enable phosphatase binding activity and phosphatidylinositol binding activity. Predicted to be involved in regulation of ruffle assembly. Predicted to act upstream of or within phosphatidylinositol biosynthetic process. Predicted to be active in ruffle membrane. Orthologous to human SH3YL1 (SH3 and SYLF domain containing 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362724; SH3 domain containing, Ysc84-like 1; SH3 domain containing, Ysc84-like 1 (S. cerevisiae); Sh3 domain YSC-like 1; SH3 domain-containing YSC84-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,250,036 - 53,293,406 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl653,249,610 - 53,293,404 (+)EnsemblGRCr8
mRatBN7.2647,522,098 - 47,565,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl647,522,091 - 47,565,858 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx647,828,368 - 47,871,668 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,143,278 - 48,186,579 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0647,588,332 - 47,631,563 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0649,851,778 - 49,895,502 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl649,852,130 - 49,895,510 (+)Ensemblrn6Rnor6.0
Rnor_5.0658,531,131 - 58,574,825 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4648,799,328 - 48,842,807 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera646,727,614 - 46,770,741 (+)NCBICelera
RGSC_v3.1648,809,941 - 48,845,933 (+)NCBI
Cytogenetic Map6q16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
choline  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
diethyl phthalate  (EXP)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
L-methionine  (ISO)
maneb  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methimazole  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
parathion  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (EXP)
phytoestrogen  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
triadimefon  (EXP)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
ruffle membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:21624956  


Genomics

Comparative Map Data
Sh3yl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,250,036 - 53,293,406 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl653,249,610 - 53,293,404 (+)EnsemblGRCr8
mRatBN7.2647,522,098 - 47,565,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl647,522,091 - 47,565,858 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx647,828,368 - 47,871,668 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,143,278 - 48,186,579 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0647,588,332 - 47,631,563 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0649,851,778 - 49,895,502 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl649,852,130 - 49,895,510 (+)Ensemblrn6Rnor6.0
Rnor_5.0658,531,131 - 58,574,825 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4648,799,328 - 48,842,807 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera646,727,614 - 46,770,741 (+)NCBICelera
RGSC_v3.1648,809,941 - 48,845,933 (+)NCBI
Cytogenetic Map6q16NCBI
SH3YL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,136 - 264,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2217,730 - 266,398 (-)Ensemblhg38GRCh38
GRCh372218,136 - 264,824 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,155 - 254,158 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342208,154 - 246,341NCBI
Celera2281,261 - 326,708 (-)NCBICelera
Cytogenetic Map2p25.3NCBI
HuRef2215,050 - 260,628 (-)NCBIHuRef
CHM1_12218,094 - 264,005 (-)NCBICHM1_1
T2T-CHM13v2.02218,391 - 265,079 (-)NCBIT2T-CHM13v2.0
Sh3yl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391230,961,622 - 31,010,159 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1230,961,667 - 31,010,161 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381230,911,669 - 30,960,160 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1230,911,668 - 30,960,162 (+)Ensemblmm10GRCm38
MGSCv371231,596,534 - 31,645,014 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361231,498,273 - 31,546,203 (+)NCBIMGSCv36mm8
Celera1232,364,576 - 32,412,974 (+)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.01NCBI
Sh3yl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955487257,869 - 289,832 (-)Ensembl
ChiLan1.0NW_004955487258,116 - 290,377 (-)NCBIChiLan1.0ChiLan1.0
SH3YL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212126,283,158 - 126,329,060 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A126,287,134 - 126,333,036 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A211,952 - 257,266 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A208,156 - 253,574 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A208,156 - 252,938 (-)EnsemblpanPan2panpan1.1
SH3YL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.117202,166 - 239,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl17201,452 - 238,481 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha17192,799 - 229,883 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.017260,747 - 297,833 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl17260,734 - 298,095 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.117187,780 - 224,847 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.017205,742 - 242,829 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.017210,633 - 247,722 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sh3yl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629245,346,525 - 45,365,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493653299,215 - 127,493 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936532101,571 - 127,331 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3YL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3132,684,960 - 132,730,998 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13132,684,836 - 132,731,003 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SH3YL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114107,465,977 - 107,515,448 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14107,467,666 - 107,516,219 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660454,428,543 - 4,476,592 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3yl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248461,706,966 - 1,735,475 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248461,707,606 - 1,735,959 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sh3yl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1744,309,963 - 44,351,044 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sh3yl1
259 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:101
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000068208
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000068208   ⟹   ENSRNOP00000060428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl653,258,216 - 53,293,404 (+)Ensembl
mRatBN7.2 Ensembl647,522,481 - 47,565,854 (+)Ensembl
Rnor_6.0 Ensembl649,852,130 - 49,895,510 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104926   ⟹   ENSRNOP00000097804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl653,249,610 - 53,293,404 (+)Ensembl
mRatBN7.2 Ensembl647,522,091 - 47,565,858 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109208   ⟹   ENSRNOP00000090496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl647,529,947 - 47,565,854 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114306   ⟹   ENSRNOP00000097062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl653,249,616 - 53,293,404 (+)Ensembl
mRatBN7.2 Ensembl647,529,947 - 47,565,854 (+)Ensembl
RefSeq Acc Id: NM_001108705   ⟹   NP_001102175
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,036 - 53,293,406 (+)NCBI
mRatBN7.2647,522,481 - 47,565,856 (+)NCBI
Rnor_6.0649,852,174 - 49,895,502 (+)NCBI
Rnor_5.0658,531,131 - 58,574,825 (+)NCBI
RGSC_v3.4648,799,328 - 48,842,807 (+)RGD
Celera646,727,614 - 46,770,741 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239970   ⟹   XP_006240032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,049 - 53,293,406 (+)NCBI
mRatBN7.2647,522,102 - 47,565,858 (+)NCBI
Rnor_6.0649,851,780 - 49,895,502 (+)NCBI
Rnor_5.0658,531,131 - 58,574,825 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063262075   ⟹   XP_063118145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,049 - 53,271,088 (+)NCBI
RefSeq Acc Id: XM_063262076   ⟹   XP_063118146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,049 - 53,292,144 (+)NCBI
RefSeq Acc Id: XM_063262077   ⟹   XP_063118147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,049 - 53,286,432 (+)NCBI
RefSeq Acc Id: XR_005505541
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,049 - 53,292,138 (+)NCBI
mRatBN7.2647,522,098 - 47,565,858 (+)NCBI
RefSeq Acc Id: XR_005505542
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,049 - 53,275,401 (+)NCBI
mRatBN7.2647,522,098 - 47,547,849 (+)NCBI
RefSeq Acc Id: XR_010052117
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,049 - 53,292,128 (+)NCBI
RefSeq Acc Id: XR_010052118
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,250,049 - 53,292,127 (+)NCBI
RefSeq Acc Id: NP_001102175   ⟸   NM_001108705
- UniProtKB: B0BNA1 (UniProtKB/Swiss-Prot),   A6HB38 (UniProtKB/TrEMBL),   A0A8I6GLW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240032   ⟸   XM_006239970
- Peptide Label: isoform X1
- UniProtKB: A0A8I6B697 (UniProtKB/TrEMBL),   A0A8I6GLW3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060428   ⟸   ENSRNOT00000068208
Ensembl Acc Id: ENSRNOP00000090496   ⟸   ENSRNOT00000109208
Ensembl Acc Id: ENSRNOP00000097062   ⟸   ENSRNOT00000114306
Ensembl Acc Id: ENSRNOP00000097804   ⟸   ENSRNOT00000104926
RefSeq Acc Id: XP_063118146   ⟸   XM_063262076
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118147   ⟸   XM_063262077
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118145   ⟸   XM_063262075
- Peptide Label: isoform X2
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BNA1-F1-model_v2 AlphaFold B0BNA1 1-340 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306440 AgrOrtholog
BioCyc Gene G2FUF-37929 BioCyc
Ensembl Genes ENSRNOG00000005522 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000104926 ENTREZGENE
  ENSRNOT00000114306 ENTREZGENE
Gene3D-CATH SH3 Domains UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:9100399 IMAGE-MGC_LOAD
InterPro SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
  SH3_domain_YSC84-like UniProtKB/Swiss-Prot
  SH3YL1_SH3 UniProtKB/Swiss-Prot
  SYLF_SH3YL1-like UniProtKB/Swiss-Prot
  Ysc84_actin-binding UniProtKB/Swiss-Prot
KEGG Report rno:362724 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187919 IMAGE-MGC_LOAD
NCBI Gene 362724 ENTREZGENE
PANTHER SH3 DOMAIN-CONTAINING YSC84-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
  SH3YL1 PROTEIN UniProtKB/Swiss-Prot
Pfam SH3_9 UniProtKB/Swiss-Prot
  Ysc84 UniProtKB/Swiss-Prot
PhenoGen Sh3yl1 PhenoGen
PRINTS SH3DOMAIN UniProtKB/Swiss-Prot
PROSITE SH3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005522 RatGTEx
SMART SH3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot
UniProt A0A8I6B697 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GLW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UN28_RAT UniProtKB/TrEMBL
  A6HB38 ENTREZGENE, UniProtKB/TrEMBL
  B0BNA1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-11 Sh3yl1  SH3 and SYLF domain containing 1  Sh3yl1  SH3 domain containing, Ysc84-like 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-04 Sh3yl1  SH3 domain containing, Ysc84-like 1 (S. cerevisiae)  Sh3yl1  Sh3 domain YSC-like 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Sh3yl1  Sh3 domain YSC-like 1   Sh3yl1_predicted  Sh3 domain YSC-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sh3yl1_predicted  Sh3 domain YSC-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED