Slc38a10 (solute carrier family 38, member 10) - Rat Genome Database

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Gene: Slc38a10 (solute carrier family 38, member 10) Rattus norvegicus
Analyze
Symbol: Slc38a10
Name: solute carrier family 38, member 10
RGD ID: 1306356
Description: Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within bone development. Predicted to be active in membrane. Orthologous to human SLC38A10 (solute carrier family 38 member 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: amino acid transporter SLC38A10; LOC303740; putative sodium-coupled neutral amino acid transporter 10; RGD1306356; similar to hypothetical protein MGC15523; solute carrier family 38 member 10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810105,885,250 - 105,935,043 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10105,885,250 - 105,935,043 (-)EnsemblGRCr8
mRatBN7.210105,386,836 - 105,436,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,386,836 - 105,436,636 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10110,491,242 - 110,540,834 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010109,954,273 - 110,003,863 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,307,378 - 105,357,144 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,284,054 - 109,333,907 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,284,957 - 109,333,899 (-)Ensemblrn6Rnor6.0
Rnor_5.010108,882,342 - 108,931,899 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410109,516,004 - 109,569,804 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10103,932,190 - 103,983,957 (-)NCBICelera
RGSC_v3.110109,531,609 - 109,584,333 (-)NCBI
Cytogenetic Map10q32.3NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium silicate  (ISO)
cannabidiol  (ISO)
chlorpyrifos  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
Erionite  (ISO)
ethanol  (ISO)
fluorescein 5-isothiocyanate  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
iron dichloride  (ISO)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methotrexate  (ISO)
nickel atom  (ISO)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Golgi apparatus  (IEA,ISO)
membrane  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22876197   PMID:31842320  


Genomics

Comparative Map Data
Slc38a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810105,885,250 - 105,935,043 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10105,885,250 - 105,935,043 (-)EnsemblGRCr8
mRatBN7.210105,386,836 - 105,436,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,386,836 - 105,436,636 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10110,491,242 - 110,540,834 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010109,954,273 - 110,003,863 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,307,378 - 105,357,144 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,284,054 - 109,333,907 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,284,957 - 109,333,899 (-)Ensemblrn6Rnor6.0
Rnor_5.010108,882,342 - 108,931,899 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410109,516,004 - 109,569,804 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10103,932,190 - 103,983,957 (-)NCBICelera
RGSC_v3.110109,531,609 - 109,584,333 (-)NCBI
Cytogenetic Map10q32.3NCBI
SLC38A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,244,811 - 81,295,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,244,811 - 81,295,567 (-)Ensemblhg38GRCh38
GRCh371779,218,611 - 79,269,107 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361776,833,394 - 76,883,691 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1775,849,343 - 75,903,449 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,654,895 - 74,707,860 (-)NCBIHuRef
CHM1_11779,305,019 - 79,355,407 (-)NCBICHM1_1
T2T-CHM13v2.01782,153,934 - 82,207,205 (-)NCBIT2T-CHM13v2.0
Slc38a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,994,777 - 120,042,177 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,994,786 - 120,042,172 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811120,103,951 - 120,151,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,103,960 - 120,151,346 (-)Ensemblmm10GRCm38
MGSCv3711119,965,265 - 120,012,665 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611119,920,061 - 119,967,364 (-)NCBIMGSCv36mm8
Celera11131,839,597 - 131,887,014 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.96NCBI
Slc38a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,724,389 - 1,767,010 (+)Ensembl
ChiLan1.0NW_0049555061,724,426 - 1,767,582 (+)NCBIChiLan1.0ChiLan1.0
SLC38A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21997,825,156 - 97,876,619 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117102,724,718 - 102,776,356 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01775,671,287 - 75,722,296 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,399,832 - 81,451,077 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,399,832 - 81,451,077 (-)EnsemblpanPan2panpan1.1
SLC38A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19810,328 - 850,031 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9810,206 - 909,492 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha91,425,291 - 1,464,946 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.091,417,051 - 1,456,747 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,417,004 - 1,456,743 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,441,028 - 1,480,665 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,566,823 - 1,606,451 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,647,003 - 1,686,656 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc38a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,420,031 - 1,457,323 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365944,952,231 - 5,022,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,481,295 - 1,514,497 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1121,481,245 - 1,514,499 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,374,287 - 1,424,136 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,196,407 - 73,243,008 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,195,670 - 73,242,995 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607744,569,259 - 44,621,227 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,265,900 - 10,308,147 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480110,266,018 - 10,307,909 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc38a10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1963,860,880 - 63,910,632 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc38a10
132 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:278
Count of miRNA genes:178
Interacting mature miRNAs:198
Transcripts:ENSRNOT00000006225, ENSRNOT00000040630, ENSRNOT00000068516
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat

Markers in Region
RH138589  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr810105,894,073 - 105,894,224 (+)Marker Load Pipeline
mRatBN7.210105,395,659 - 105,395,811 (+)MAPPERmRatBN7.2
Rnor_6.010109,292,877 - 109,293,028NCBIRnor6.0
Rnor_5.010108,891,165 - 108,891,316UniSTSRnor5.0
RGSC_v3.410109,524,827 - 109,524,978UniSTSRGSC3.4
Celera10103,941,014 - 103,941,165UniSTS
Cytogenetic Map10q32.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001376915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001081798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001081800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002727846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_221195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006225   ⟹   ENSRNOP00000006225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10105,885,250 - 105,935,043 (-)Ensembl
mRatBN7.2 Ensembl10105,386,836 - 105,436,636 (-)Ensembl
Rnor_6.0 Ensembl10109,284,957 - 109,333,899 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094909   ⟹   ENSRNOP00000086955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10105,885,250 - 105,935,043 (-)Ensembl
mRatBN7.2 Ensembl10105,386,836 - 105,436,636 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095802   ⟹   ENSRNOP00000081337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10105,885,250 - 105,935,043 (-)Ensembl
mRatBN7.2 Ensembl10105,387,377 - 105,436,609 (-)Ensembl
RefSeq Acc Id: NM_001376915   ⟹   NP_001363844
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,250 - 105,935,043 (-)NCBI
mRatBN7.210105,386,836 - 105,436,636 (-)NCBI
RefSeq Acc Id: XM_002727846   ⟹   XP_002727892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,031 (-)NCBI
mRatBN7.210105,386,836 - 105,436,579 (-)NCBI
Rnor_6.010109,284,054 - 109,333,907 (-)NCBI
Rnor_5.010108,882,342 - 108,931,899 (-)NCBI
RGSC_v3.410109,516,004 - 109,569,804 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247943   ⟹   XP_006248005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,031 (-)NCBI
mRatBN7.210105,386,836 - 105,436,579 (-)NCBI
Rnor_6.010109,284,054 - 109,333,907 (-)NCBI
Rnor_5.010108,882,342 - 108,931,899 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006247944   ⟹   XP_006248006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,031 (-)NCBI
mRatBN7.210105,387,938 - 105,436,579 (-)NCBI
Rnor_6.010109,284,054 - 109,333,907 (-)NCBI
Rnor_5.010108,882,342 - 108,931,899 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006247946   ⟹   XP_006248008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,031 (-)NCBI
mRatBN7.210105,386,836 - 105,436,579 (-)NCBI
Rnor_6.010109,284,054 - 109,333,907 (-)NCBI
Rnor_5.010108,882,342 - 108,931,899 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086215   ⟹   XP_038942143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,031 (-)NCBI
mRatBN7.210105,387,938 - 105,436,579 (-)NCBI
RefSeq Acc Id: XM_039086216   ⟹   XP_038942144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,934,117 (-)NCBI
mRatBN7.210105,387,938 - 105,435,711 (-)NCBI
RefSeq Acc Id: XM_039086217   ⟹   XP_038942145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,031 (-)NCBI
mRatBN7.210105,386,836 - 105,436,579 (-)NCBI
RefSeq Acc Id: XM_039086218   ⟹   XP_038942146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,031 (-)NCBI
mRatBN7.210105,387,676 - 105,436,579 (-)NCBI
RefSeq Acc Id: XM_039086219   ⟹   XP_038942147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,924,121 (-)NCBI
mRatBN7.210105,386,836 - 105,425,732 (-)NCBI
RefSeq Acc Id: XM_039086220   ⟹   XP_038942148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,921,160 (-)NCBI
mRatBN7.210105,386,836 - 105,422,774 (-)NCBI
RefSeq Acc Id: XM_063269248   ⟹   XP_063125318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,031 (-)NCBI
RefSeq Acc Id: XM_063269249   ⟹   XP_063125319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,934,187 (-)NCBI
RefSeq Acc Id: XM_063269250   ⟹   XP_063125320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,032 (-)NCBI
RefSeq Acc Id: XM_221195   ⟹   XP_221195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,885,789 - 105,935,039 (-)NCBI
mRatBN7.210105,387,384 - 105,436,601 (-)NCBI
Rnor_6.010109,284,054 - 109,333,907 (-)NCBI
Rnor_5.010108,882,342 - 108,931,899 (-)NCBI
RGSC_v3.410109,516,004 - 109,569,804 (-)RGD
Sequence:
RefSeq Acc Id: XP_002727892   ⟸   XM_002727846
- Peptide Label: isoform X1
- UniProtKB: A6HLB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_221195   ⟸   XM_221195
- Peptide Label: isoform X5
- UniProtKB: E9PT23 (UniProtKB/TrEMBL),   A0A8I5ZRR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248008   ⟸   XM_006247946
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZRR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248005   ⟸   XM_006247943
- Peptide Label: isoform X2
- UniProtKB: A6HLB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248006   ⟸   XM_006247944
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A7H4 (UniProtKB/TrEMBL),   A6HLB3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006225   ⟸   ENSRNOT00000006225
RefSeq Acc Id: NP_001363844   ⟸   NM_001376915
- UniProtKB: A0A8L2Q2J1 (UniProtKB/TrEMBL),   A0A8I5ZRR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942145   ⟸   XM_039086217
- Peptide Label: isoform X10
- UniProtKB: A6HLB3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942147   ⟸   XM_039086219
- Peptide Label: isoform X13
- UniProtKB: A6HLB3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942148   ⟸   XM_039086220
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038942146   ⟸   XM_039086218
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZRR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942143   ⟸   XM_039086215
- Peptide Label: isoform X4
- UniProtKB: A6HLB3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942144   ⟸   XM_039086216
- Peptide Label: isoform X8
- UniProtKB: A6HLB3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081337   ⟸   ENSRNOT00000095802
Ensembl Acc Id: ENSRNOP00000086955   ⟸   ENSRNOT00000094909
RefSeq Acc Id: XP_063125320   ⟸   XM_063269250
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZRR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125318   ⟸   XM_063269248
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZRR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125319   ⟸   XM_063269249
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZRR0 (UniProtKB/TrEMBL)
Protein Domains
Amino acid transporter transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PT23-F1-model_v2 AlphaFold E9PT23 1-1099 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697956
Promoter ID:EPDNEW_R8478
Type:initiation region
Name:Slc38a10_1
Description:solute carrier family 38, member 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010109,333,872 - 109,333,932EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306356 AgrOrtholog
BioCyc Gene G2FUF-22453 BioCyc
Ensembl Genes ENSRNOG00000004604 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000006225 ENTREZGENE
  ENSRNOT00000094909 ENTREZGENE
  ENSRNOT00000095802 ENTREZGENE
IMAGE_CLONE IMAGE:7375727 IMAGE-MGC_LOAD
InterPro AA_transpt_TM UniProtKB/Swiss-Prot
MGC_CLONE MGC:112835 IMAGE-MGC_LOAD
NCBI Gene 303740 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 10-RELATED UniProtKB/Swiss-Prot
Pfam Aa_trans UniProtKB/Swiss-Prot
PhenoGen Slc38a10 PhenoGen
RatGTEx ENSRNOG00000004604 RatGTEx
UniProt A0A8I5ZRR0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7H4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q2J1 ENTREZGENE, UniProtKB/TrEMBL
  A6HLB3 ENTREZGENE, UniProtKB/TrEMBL
  E9PT23 ENTREZGENE
  Q4G035_RAT UniProtKB/TrEMBL
  S38AA_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-11 Slc38a10  solute carrier family 38, member 10  RGD1306356  similar to hypothetical protein MGC15523  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306356  similar to hypothetical protein MGC15523  RGD1306356_predicted  similar to hypothetical protein MGC15523 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306356_predicted  similar to hypothetical protein MGC15523 (predicted)  LOC303740_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303740_predicted  similar to hypothetical protein MGC15523 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL