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Gene: Aqr (aquarius intron-binding spliceosomal factor) Rattus norvegicus

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Symbol:

Aqr

Name:

aquarius intron-binding spliceosomal factor

RGD ID:

1306223

Description:

Predicted to enable 3'-5' RNA helicase activity; mRNA binding activity; and single-stranded RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 2 spliceosome. Orthologous to human AQR (aquarius intron-binding spliceosomal factor); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

aquarius; aquarius homolog; aquarius homolog (mouse); intron-binding protein aquarius; LOC366163; RNA helicase aquarius

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AQR (aquarius intron-binding spliceosomal factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Aqr (aquarius)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Aqr (aquarius intron-binding spliceosomal factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AQR (aquarius intron-binding spliceosomal factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AQR (aquarius intron-binding spliceosomal factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Aqr (aquarius intron-binding spliceosomal factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AQR (aquarius intron-binding spliceosomal factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AQR (aquarius intron-binding spliceosomal factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Aqr (aquarius intron-binding spliceosomal factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Aqr (aquarius intron-binding spliceosomal factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DSC1 (desmocollin 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	AQR (aquarius intron-binding spliceosomal factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Aqr (aquarius)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	aqr (aquarius intron-binding spliceosomal factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG31368	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	emb-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	aqr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	aqr	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	121,329,287 - 121,399,375 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	121,329,289 - 121,399,321 (-)	Ensembl				GRCr8
mRatBN7.2	3	100,874,987 - 100,945,026 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	100,874,987 - 100,945,044 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	104,507,115 - 104,577,200 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	113,106,154 - 113,176,241 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	110,789,498 - 110,859,613 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	105,570,399 - 105,640,431 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	105,570,292 - 105,640,463 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	112,143,849 - 112,213,881 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	99,964,018 - 100,034,050 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	99,844,517 - 99,914,644 (-)	NCBI		Celera
RGSC_v3.1	3	99,860,707 - 99,953,472 (-)	NCBI
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-hydroxypropanoic acid (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cypermethrin (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

diclofenac (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

ivermectin (ISO)

lead(0) (ISO)

lutein (ISO)

methimazole (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

paraquat (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propiconazole (EXP)

rac-lactic acid (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sulfadimethoxine (EXP)

tert-butyl hydroperoxide (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mRNA processing (IEA)

mRNA splicing, via spliceosome (IEA,ISO)

RNA splicing (IEA)

Cellular Component

catalytic step 2 spliceosome (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

spliceosomal complex (IEA)

U2-type catalytic step 2 spliceosome (IEA,ISO)

Molecular Function

3'-5' RNA helicase activity (IEA,ISO)

ATP binding (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

RNA binding (IEA)

RNA helicase activity (IEA)

single-stranded RNA binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Splicing and beyond: the many faces of the Prp19 complex.	Chanarat S and Strasser K, Biochim Biophys Acta. 2013 Oct;1833(10):2126-34. doi: 10.1016/j.bbamcr.2013.05.023. Epub 2013 Jun 3.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:11991638	PMID:12477932	PMID:19946888	PMID:22658674	PMID:22681889	PMID:28076346

Genomics

Comparative Map Data

Aqr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	121,329,287 - 121,399,375 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	121,329,289 - 121,399,321 (-)	Ensembl				GRCr8
mRatBN7.2	3	100,874,987 - 100,945,026 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	100,874,987 - 100,945,044 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	104,507,115 - 104,577,200 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	113,106,154 - 113,176,241 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	110,789,498 - 110,859,613 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	105,570,399 - 105,640,431 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	105,570,292 - 105,640,463 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	112,143,849 - 112,213,881 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	99,964,018 - 100,034,050 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	99,844,517 - 99,914,644 (-)	NCBI		Celera
RGSC_v3.1	3	99,860,707 - 99,953,472 (-)	NCBI
Cytogenetic Map	3	q35	NCBI

AQR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	34,851,782 - 34,969,742 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	34,851,782 - 34,969,765 (-)	Ensembl			hg38	GRCh38
GRCh37	15	35,143,983 - 35,261,943 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	32,935,844 - 33,049,287 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	15	32,935,844 - 33,049,287	NCBI
Celera	15	11,907,907 - 12,021,336 (-)	NCBI		Celera
Cytogenetic Map	15	q14	NCBI
HuRef	15	11,994,173 - 12,107,093 (-)	NCBI		HuRef
CHM1_1	15	35,266,546 - 35,379,955 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	32,656,986 - 32,774,951 (-)	NCBI		T2T-CHM13v2.0

Aqr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	113,931,642 - 114,005,788 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	113,931,651 - 114,017,505 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	114,101,161 - 114,175,339 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	114,101,170 - 114,187,024 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	113,926,908 - 114,001,075 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	113,792,613 - 113,866,760 (-)	NCBI		MGSCv36	mm8
Celera	2	115,230,496 - 115,304,588 (-)	NCBI		Celera
Cytogenetic Map	2	E4	NCBI
cM Map	2	57.57	NCBI

Aqr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	2,215,490 - 2,304,726 (-)	Ensembl
ChiLan1.0	NW_004955416	2,214,990 - 2,304,924 (-)	NCBI	ChiLan1.0	ChiLan1.0

AQR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	24,074,536 - 24,189,557 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	28,221,307 - 28,337,934 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	13,774,234 - 13,891,046 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	32,034,897 - 32,149,157 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	32,036,653 - 32,149,157 (-)	Ensembl			panPan2	panpan1.1

AQR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	2,571,359 - 2,670,715 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	2,571,554 - 2,670,597 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	2,621,691 - 2,721,085 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	2,685,677 - 2,785,077 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	2,685,567 - 2,784,990 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	2,620,822 - 2,720,171 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	2,720,337 - 2,819,759 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	2,848,929 - 2,948,341 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Aqr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	81,119,266 - 81,229,437 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936673	922,341 - 1,033,307 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936673	922,393 - 1,032,572 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AQR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	136,121,111 - 136,233,825 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	136,135,854 - 136,235,538 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	152,297,891 - 152,374,125 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AQR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	47,927,167 - 48,036,764 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	47,927,137 - 48,036,478 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	92,868,449 - 92,982,639 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Aqr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	2,083,341 - 2,173,208 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624804	2,080,295 - 2,172,643 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Aqr
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	92,318,661 - 92,389,413 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Aqr
614 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	245
Count of miRNA genes:	165
Interacting mature miRNAs:	179
Transcripts:	ENSRNOT00000011952
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	116582412	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1582252	Sual1	Serum uric acid level QTL 1	3.4	0.0123	blood uric acid amount (VT:0010302)	blood uric acid level (CMO:0000501)	3	116582412	122654872	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

AW495846

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	100,875,213 - 100,875,330 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	105,570,626 - 105,570,742	NCBI	Rnor6.0
Rnor_5.0	3	112,144,076 - 112,144,192	UniSTS	Rnor5.0
RGSC_v3.4	3	99,964,245 - 99,964,361	UniSTS	RGSC3.4
Celera	3	99,844,744 - 99,844,860	UniSTS
Cytogenetic Map	3	q35	UniSTS

BF400060

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	100,905,748 - 100,905,863 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	105,601,158 - 105,601,272	NCBI	Rnor6.0
Rnor_5.0	3	112,174,608 - 112,174,722	UniSTS	Rnor5.0
RGSC_v3.4	3	99,994,777 - 99,994,891	UniSTS	RGSC3.4
Celera	3	99,875,370 - 99,875,484	UniSTS
RH 3.4 Map	3	816.0	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH137108

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	100,875,023 - 100,875,174 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	105,570,436 - 105,570,586	NCBI	Rnor6.0
Rnor_5.0	3	112,143,886 - 112,144,036	UniSTS	Rnor5.0
RGSC_v3.4	3	99,964,055 - 99,964,205	UniSTS	RGSC3.4
Celera	3	99,844,554 - 99,844,704	UniSTS
RH 3.4 Map	3	815.2	UniSTS
Cytogenetic Map	3	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC135268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC133727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011952 ⟹ ENSRNOP00000011950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	121,329,289 - 121,399,321 (-)	Ensembl
mRatBN7.2 Ensembl	3	100,874,987 - 100,945,044 (-)	Ensembl
Rnor_6.0 Ensembl	3	105,570,292 - 105,640,463 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105477 ⟹ ENSRNOP00000089747

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	121,329,289 - 121,399,321 (-)	Ensembl
mRatBN7.2 Ensembl	3	100,874,987 - 100,945,044 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162579 ⟹ ENSRNOP00000107332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	121,329,289 - 121,399,321 (-)	Ensembl

RefSeq Acc Id:

NM_001100987 ⟹ NP_001094457

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	121,329,287 - 121,399,321 (-)	NCBI
mRatBN7.2	3	100,874,987 - 100,945,026 (-)	NCBI
Rnor_6.0	3	105,570,399 - 105,640,431 (-)	NCBI
Rnor_5.0	3	112,143,849 - 112,213,881 (-)	NCBI
RGSC_v3.4	3	99,964,018 - 100,034,050 (-)	RGD
Celera	3	99,844,517 - 99,914,644 (-)	RGD

Sequence:

show sequence

TGAGAACTTAGGCTCCCTTGTGCCCGGCGCTGTGGCACCCTGGCGGTAGCTTGCAGCCGCTGCC
TGAAAGCTTTGGAGAATCGCCGCTACGAGCCTCTGGTCTGCTTCGGAGGTGACCGCTGCGATGG
CGGCTCCTGCGCAGCCCAAGAAAATCGTGGCCCCCACCGTGTCCCAGATCAACGCAGAGTTCGT
CACCCAGCTGGCATGTAAATACTGGGCTCCTCATATCAAGAAGAAATCACCTTTTGATATAAAA
GTGATAGAAGAAATATATGAAAAAGAGATCGTCAAATCACGGTTTGCCATCAGAAAAATAATGC
TGCTGGAATTTAGCCAATATCTTGAAAATTATCTTTGGATGAATTATTCGCCAGAAGTTTCCAG
CAAAGCCTATTTAATGTCCATCTGCTGTATGGTGAATGAGAAGTTCAGAGAAAATGTCCCAGCC
TGGGAGACCTTTAAGAAGAAGCCAGACCACTTCCCCTTCTTCTTTAAACGCATCTTGAAAGCAG
CACTAGCTGAGACTGATGGCGAGTTCTCCCTCCACGAGCAGACCGTGCTCCTGCTTTTCCTGGA
TCATTGCTTCAATAGCTTGGAAGTAGACTTGATAAGGAGTCAAGTACAGCAGCTTATCTCCCTT
CCTATGTGGATGGGCTTGCAGCCGGCACGATTGGAATTAGAATTAAAAAAGACACCAAAGCTAA
GGAAATTCTGGAACTTGATTAAAAAGAATGATGAAAAGATGGACCCAGAAGCAAGAGAGCAGGC
CTACCAAGAAAGGAGGTTTCTTTCCCAGCTCATCCAGAAGTTCATCTCCGTGTTGAAGTCCATC
CCACTTTCTGAGCCTGTCACTATGGACAAAGTTCATTACTGTGAAAGATTCATCGAACTTATGA
TTGATCTAGAGGCTCTGCTCCCCACAAGGCGCTGGTTCAACACCATCCTGGATGACTCCCACCT
CTTGGTGCACTGTTACCTTTCCAGTCTTGTCCACAGGGAAGAGGATGGCCATCTGTTTTCCCAG
CTATTAGACATGCTGAAGTTCTATACGGGCTTTGAAATTAACGACCAGACTGGAAATGCCCTGA
CAGAGAACGAGATGACCACGATTCACTATGACAGAATCACATCTCTGCAGAGAGCTGCGTTCGC
GCATTTCCCTGAGCTCTATGACTTTGCCCTCTCCAATGTGGCAGAAGTAGATGCCCGGGATTCC
TTGGTCAAGTTTTTTGGGCCTCTCAGTTCAAACACACTCCACCAGGTGGCATCATACCTCTGCC
TCTTGCCAACGCTCCCTAAAAATGAAGATACAACTTTTGATAAAGAGTTTCTTCTAGAATTGCT
GGTGTCTCGCCATGAACGCCGCATCTCTCAGATTCAGCAGTTGAATCAGATGCCTTTGTATCCT
ACTGAGAAAATTATCTGGGATGAAAACATCGTCCCTACCGAGTACTATTCTGGGGAAGGCTGTC
TTGCTCTCCCCAAGTTGAATTTGCAGTTTTTAACTCTACATGACTATCTCCTGAGGAACTTTAA
TCTCTTCCGCTTAGAATCAACTTATGAAATTAGACAAGACATTGAGGACAGCGTCAGCAGAATG
AAGCCATGGCAATCTGAGTATGGCGGTGTCGTGTTTGGTGGTTGGGCACGAATGGCTCAGCCCA
TTGTGGCTTTCACTGTAGTCGAGGTTGCCAAACCCAACATTGGTGAAAACTGGCCAACCCGAGT
TCGTGCAGATGTCACCATCAATCTGAATGTCAGAGACCACATCAAGGATGAGTGGGAAGGTCTT
CGCAAACACGATGTATGCTTTTTAATTACTGTGCGTCCCACAAAACCTTACGGCACTAAGTTTG
ACAGGAGGAGGCCTTTTATTGAGCAAGTTGGTCTGGTGTACGTCAGAGGCTGTGAGATCCAGGG
CATGCTGGACGACAAAGGGCGAGTCATCGAAGACGGACCTGAACCCAGACCCAATCTTAGAGGA
GAGTCAAGGACATTTCGAGTATTTTTGGATCCAAACCAGTATCAACAGGATATGACCAATACTA
TACAAAATGGAGCCGAAGATGTGTACGACACTTTCAATGTCATAATGAGGAGGAAACCAAAGGA
GAATAACTTCAAGGCCGTGTTGGAGACTATTCGAAATCTGATGAATACCGACTGCGTGGTCCCA
GACTGGCTGCATGACATCATTTTAGGTTATGGGGACCCAAGTAGTGCCCATTATTCCAAAATGC
CCAATCAGATTGCTACGTTGGATTTCAATGACACTTTTCTCTCCATTGAACATTTGAAAGCCAG
TTTTCCTGGTCATAATGTCAAAGTGACCGTGAATGACCCAGCTCTACAAATACCCCCTTTCAGA
ATAACTTTCCCAGTAAGAAGTGGAAAGGGGAAGAAAAGAAAAGATGCAGATGGGGAAGAAGACG
ACACGGAAGAAGCAAAGACCTTAATTGTGGAACCTCACGTTATTCCTAATAGAGGTCCTTATCC
TTACAACCAGCCCAAACGTAATACAATCCAGTTCACTCATACACAGATAGAGGCCATCCGGGCC
GGAATGCAGCCTGGACTGACTATGGTTGTGGGACCACCTGGTACAGGAAAAACAGATGTTGCAG
TCCAGATCATTTCCAACATCTACCACAATTTTCCAGAACAGAGGACTTTAATTGTTACTCATTC
CAATCAGGCTCTGAACCAGTTGTTTGAGAAAATCATGGCTTTAGACATTGATGAGCGCCATCTC
CTGCGTCTGGGTCATGGAGAGGAAGAGCTAGAGACGGAGAAAGACTTTAGCAGGTATGGAAGAG
TTAATTATGTCCTGGCTCGAAGAATAGAACTTTTAGAAGAAGTCAAACGATTACAAAAGAGTCT
GGGGGTTCCGGGAGATGCTTCGTATACCTGTGAAACTGCAGGCTATTTCTTCTTATATCAGGTA
ATGTCGCGTTGGGAAGAATACATGAGCAGAGTGAAGAACACAGGGAGCGCCAGCCCAGATGCTG
CGGAGGTCGCCACGTTCTTCCCCTTCCATGAGTATTTTGCCAATGCTCCTCAGCCCATCTTTAA
AGGCAGATCTTATGAAGAAGACATGGAAATCGCAGAAGGGTGCTTCAGGCATATTAAGAAAATC
TTCACTCAGCTTGAGGAATTCAGAGCTTCAGAACTGCTTCGCAGTGGACTGGACAGGTCTAAAT
ACCTCTTGGTGAAAGAAGCCAAAATCATTGCTATGACGTGTACTCATGCTGCCTTGAAACGACA
TGACTTGGTCAAGTTGGGTTTCAAGTATGACAACATTTTAATGGAAGAGGCTGCTCAGATTCTG
GAGATAGAAACCTTTATCCCACTACTTCTGCAGAATCCTCAAGACGGATTCAGCCGATTGAAAC
GATGGATTATGATTGGTGATCACCACCAATTGCCTCCAGTCATTAAGAACATGGCCTTTCAGAA
GTATTCCAATATGGAGCAGTCTCTTTTTACTCGCTTTGTCCGGGTTGGAGTTCCTACTGTGGAC
CTTGATGCTCAAGGGAGAGCCCGGGCCAGCTTGTGTAACCTCTACAACTGGCGTTACAAAAACC
TAGGGAACTTGCCACACGTGCAGCTCCTGCCAGAGTTCAGCACAGCCAACGCAGGCCTGCTGTA
CGACTTCCAGCTCATCAATGTGGAAGACTTCCAGGGAGTGGGAGAGTCGGAGCCTAACCCTTAC
TTCTACCAGAACCTCGGAGAGGCAGAGTACGTAGTAGCGCTCTTCATGTACATGTGCTTGCTTG
GCTACCCTGCGGACAAGATCAGCATTCTGACGACCTACAATGGACAGAAGCACCTGATCCGGGA
CATCATCAATAGGCGCTGTGGGAATAATCCACTCATTGGGAGGCCGAACAAGGTGACAACTGTT
GATAGGTTCCAAGGTCAACAGAATGACTACATCCTCCTTTCTCTAGTGCGGACCAGGGCCGTGG
GCCATTTGAGGGATGTGCGCCGCTTGGTGGTAGCCATGTCGAGAGCCAGGCTTGGCCTGTATAT
CTTCGCTAGAGTATCCCTCTTCCAAAATTGCTTTGAACTGACTCCTGCTTTCAGCCAGCTCACT
GCCCGCCCACTGCATTTGCATATTATTCCAACAGAACCTTTCCCAACCTCCAGAAAGAATGGAG
AGAGACCTCCTCATGAAGTACAGGTAATAAAGAACATGCCCCAGATGGCGAATTTTGTGTACAA
TATGTACATGCATTTGATACAGACGACCCACCATTATCATCAGACTTTCTTACAACTACCGCCT
GCCATGGTGGAAGAAGGTGAGGAGGTTCAGAGCCAAGAAACAGAAATGGAAGCAGAAGAGGAAA
CTGGGTCTGTTCAAGCTAACCTCACACCCAGTCCAACGGATGCCAGCCTGAGTCAAGAGACCCC
AACTTCTCAGCCTGACTGCTCCAATCAGACGGAGGCTGCCTCCAGTCACACAGAAGATACCTCT
GCTCTGTGTGACATTACTACTGCAGCCGAGCCTGTCTCTGCAGCGGCAGAAGCTGCCACCCCAC
AAGATGGGCCTTCTGTTCCCGCAGAGACCAAGTAGCCTATCTGGAGCACAGCCTGGGACATTCC
ATTTATAAAGTCTAAGTGAGGTTACCTTTTGGATTTCATACTCACTGTACGGCTTTAATGACAC
CAGCTAATGTTCAGTCCTTATGTTTATTAGCTGGTTTCCTTGTTTTGTATATTTTTTATTTATA
AATATAAAAACAACTCTAGTTTCATTTGTTTATTCCGAAGAGAAACTAATTTGACTGCTGACTG
CATCTGAGGTAATACCTGCATTAAAATTGTTTTCTATGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063284276 ⟹ XP_063140346

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	121,342,782 - 121,399,375 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094457	(Get FASTA)	NCBI Sequence Viewer
	XP_063140346	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI33728	(Get FASTA)	NCBI Sequence Viewer
	EDL79829	(Get FASTA)	NCBI Sequence Viewer
	EDL79830	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011950
	ENSRNOP00000011950.5
	ENSRNOP00000089747.1
	ENSRNOP00000107332.1

RefSeq Acc Id:

NP_001094457 ⟸ NM_001100987

- UniProtKB:

A3KNA0 (UniProtKB/TrEMBL), A6HP79 (UniProtKB/TrEMBL), A6HP78 (UniProtKB/TrEMBL), F7FAP1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAPAQPKKIVAPTVSQINAEFVTQLACKYWAPHIKKKSPFDIKVIEEIYEKEIVKSRFAIRKI
MLLEFSQYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWETFKKKPDHFPFFFKRILK
AALAETDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQPARLELELKKTPK
LRKFWNLIKKNDEKMDPEAREQAYQERRFLSQLIQKFISVLKSIPLSEPVTMDKVHYCERFIEL
MIDLEALLPTRRWFNTILDDSHLLVHCYLSSLVHREEDGHLFSQLLDMLKFYTGFEINDQTGNA
LTENEMTTIHYDRITSLQRAAFAHFPELYDFALSNVAEVDARDSLVKFFGPLSSNTLHQVASYL
CLLPTLPKNEDTTFDKEFLLELLVSRHERRISQIQQLNQMPLYPTEKIIWDENIVPTEYYSGEG
CLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDIEDSVSRMKPWQSEYGGVVFGGWARMAQ
PIVAFTVVEVAKPNIGENWPTRVRADVTINLNVRDHIKDEWEGLRKHDVCFLITVRPTKPYGTK
FDRRRPFIEQVGLVYVRGCEIQGMLDDKGRVIEDGPEPRPNLRGESRTFRVFLDPNQYQQDMTN
TIQNGAEDVYDTFNVIMRRKPKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYGDPSSAHYSK
MPNQIATLDFNDTFLSIEHLKASFPGHNVKVTVNDPALQIPPFRITFPVRSGKGKKRKDADGEE
DDTEEAKTLIVEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDV
AVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYG
RVNYVLARRIELLEEVKRLQKSLGVPGDASYTCETAGYFFLYQVMSRWEEYMSRVKNTGSASPD
AAEVATFFPFHEYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRS
KYLLVKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRL
KRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWRYK
NLGNLPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL
LGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRA
VGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTEPFPTSRKN
GERPPHEVQVIKNMPQMANFVYNMYMHLIQTTHHYHQTFLQLPPAMVEEGEEVQSQETEMEAEE
ETGSVQANLTPSPTDASLSQETPTSQPDCSNQTEAASSHTEDTSALCDITTAAEPVSAAAEAAT
PQDGPSVPAETK

hide sequence

Ensembl Acc Id:

ENSRNOP00000011950 ⟸ ENSRNOT00000011952

Ensembl Acc Id:

ENSRNOP00000089747 ⟸ ENSRNOT00000105477

RefSeq Acc Id:	XP_063140346 ⟸ XM_063284276
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000107332 ⟸ ENSRNOT00000162579

Protein Domains

DNA2/NAM7 helicase helicase DNA2/NAM7 helicase-like C-terminal RNA helicase aquarius beta-barrel RNA helicase aquarius insertion RNA helicase aquarius N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A3KNA0-F1-model_v2	AlphaFold	A3KNA0	1-1484	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692299

Promoter ID:

EPDNEW_R2823

Type:

initiation region

Name:

Aqr_1

Description:

aquarius intron-binding spliceosomal factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	105,640,449 - 105,640,509	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306223	AgrOrtholog
BioCyc Gene	G2FUF-48343	BioCyc
Ensembl Genes	ENSRNOG00000008912	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011952	ENTREZGENE
	ENSRNOT00000011952.8	UniProtKB/TrEMBL
	ENSRNOT00000105477.2	UniProtKB/TrEMBL
	ENSRNOT00000162579.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7108638	IMAGE-MGC_LOAD
InterPro	Aquarius_b-barrel	UniProtKB/TrEMBL
	Aquarius_insert	UniProtKB/TrEMBL
	Aquarius_N	UniProtKB/TrEMBL
	CWF11_fam	UniProtKB/TrEMBL
	DNA2/NAM7-like	UniProtKB/TrEMBL
	DNA2/NAM7_AAA_11	UniProtKB/TrEMBL
	DNA2/NAM7_like_AAA_12	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SF1_C_Upf1	UniProtKB/TrEMBL
KEGG Report	rno:366163	UniProtKB/TrEMBL
MGC_CLONE	MGC:156744	IMAGE-MGC_LOAD
NCBI Gene	366163	ENTREZGENE
PANTHER	PTHR10887	UniProtKB/TrEMBL
	PTHR10887:SF5	UniProtKB/TrEMBL
Pfam	AAA_11	UniProtKB/TrEMBL
	AAA_12	UniProtKB/TrEMBL
	Aquarius_N	UniProtKB/TrEMBL
	Aquarius_N_2nd	UniProtKB/TrEMBL
	Aquarius_N_3rd	UniProtKB/TrEMBL
PhenoGen	Aqr	PhenoGen
PIRSF	AQR_cwf11	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008912	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I6A8T5_RAT	UniProtKB/TrEMBL
	A0ABK0LTF5_RAT	UniProtKB/TrEMBL
	A3KNA0	ENTREZGENE
	A6HP78	ENTREZGENE, UniProtKB/TrEMBL
	A6HP79	ENTREZGENE, UniProtKB/TrEMBL
	F7FAP1	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A3KNA0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-09-18	Aqr	aquarius intron-binding spliceosomal factor	Aqr	aquarius homolog (mouse)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Aqr	aquarius homolog (mouse)	Aqr	aquarius	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Aqr	aquarius	Aqr_predicted	aquarius (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Aqr_predicted	aquarius (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)