Rnf6 (ring finger protein 6) - Rat Genome Database

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Gene: Rnf6 (ring finger protein 6) Rattus norvegicus
Analyze
Symbol: Rnf6
Name: ring finger protein 6
RGD ID: 1306092
Description: Predicted to enable DNA binding activity; nuclear androgen receptor binding activity; and ubiquitin protein ligase activity. Predicted to be involved in several processes, including protein polyubiquitination; regulation of androgen receptor signaling pathway; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within negative regulation of axon extension. Predicted to be located in PML body; axon; and cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in esophagus squamous cell carcinoma and squamous cell carcinoma. Orthologous to human RNF6 (ring finger protein 6); INTERACTS WITH 1,2-dimethylhydrazine; 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase RNF6; LOC304271; ring finger protein (C3H2C3 type) 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,929,160 - 13,940,663 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1213,931,074 - 13,940,652 (+)EnsemblGRCr8
mRatBN7.2128,816,797 - 8,826,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,816,833 - 8,826,847 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,614,232 - 9,624,247 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.012244,931 - 254,955 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,260,871 - 9,270,886 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01210,574,168 - 10,583,196 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1210,574,168 - 10,583,208 (+)Ensemblrn6Rnor6.0
Rnor_5.01212,676,145 - 12,685,173 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4129,193,659 - 9,203,700 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1210,644,352 - 10,654,387 (+)NCBICelera
RGSC_v3.1129,224,271 - 9,233,665 (-)NCBI
Cytogenetic Map12p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IEA,ISO)
cytoplasm  (IEA,ISO)
nuclear membrane  (ISO)
nucleus  (IEA,ISO)
PML body  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. RNF6 facilitates metastasis and radioresistance in hepatocellular carcinoma through ubiquitination of FoxA1. Cai J, etal., Exp Cell Res. 2019 Jan 1;374(1):152-161. doi: 10.1016/j.yexcr.2018.11.019. Epub 2018 Nov 26.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Identification of somatic mutations of the RNF6 gene in human esophageal squamous cell carcinoma. Lo HS, etal., Cancer Res. 2002 Aug 1;62(15):4191-3.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11971979   PMID:16204183   PMID:19345326   PMID:32955171  


Genomics

Comparative Map Data
Rnf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,929,160 - 13,940,663 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1213,931,074 - 13,940,652 (+)EnsemblGRCr8
mRatBN7.2128,816,797 - 8,826,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,816,833 - 8,826,847 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,614,232 - 9,624,247 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.012244,931 - 254,955 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,260,871 - 9,270,886 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01210,574,168 - 10,583,196 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1210,574,168 - 10,583,208 (+)Ensemblrn6Rnor6.0
Rnor_5.01212,676,145 - 12,685,173 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4129,193,659 - 9,203,700 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1210,644,352 - 10,654,387 (+)NCBICelera
RGSC_v3.1129,224,271 - 9,233,665 (-)NCBI
Cytogenetic Map12p11NCBI
RNF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381326,132,115 - 26,223,085 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1326,132,115 - 26,222,460 (-)Ensemblhg38GRCh38
GRCh371326,706,253 - 26,796,508 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361325,684,905 - 25,694,508 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341325,604,252 - 25,694,508NCBI
Celera137,855,135 - 7,864,738 (-)NCBICelera
Cytogenetic Map13q12.13NCBI
HuRef137,604,511 - 7,614,114 (-)NCBIHuRef
CHM1_11326,754,931 - 26,764,534 (-)NCBICHM1_1
T2T-CHM13v2.01325,346,027 - 25,436,863 (-)NCBIT2T-CHM13v2.0
Rnf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395146,146,003 - 146,158,267 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5146,146,002 - 146,158,365 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385146,209,193 - 146,221,457 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5146,209,192 - 146,221,555 (-)Ensemblmm10GRCm38
MGSCv375147,020,780 - 147,033,013 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365146,513,438 - 146,525,671 (-)NCBIMGSCv36mm8
Celera5144,188,070 - 144,200,305 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map585.18NCBI
Rnf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554975,744,157 - 5,754,728 (-)Ensembl
ChiLan1.0NW_0049554975,744,485 - 5,754,728 (-)NCBIChiLan1.0ChiLan1.0
RNF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21425,812,146 - 25,822,490 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11316,920,266 - 16,930,612 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0137,505,669 - 7,515,542 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11325,774,228 - 25,865,087 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1325,854,765 - 25,864,629 (-)EnsemblpanPan2panpan1.1
RNF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12513,199,201 - 13,240,347 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2513,199,397 - 13,207,497 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2513,269,392 - 13,298,524 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02513,334,535 - 13,363,674 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2513,334,224 - 13,377,929 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12513,218,261 - 13,247,377 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02513,210,921 - 13,240,050 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02513,261,674 - 13,290,793 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945114,892,862 - 114,902,087 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493694855,699 - 67,972 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493694857,806 - 67,875 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,020,852 - 4,031,787 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1114,020,752 - 4,033,040 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2113,459,798 - 3,471,362 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.135,461,053 - 5,471,268 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl35,462,126 - 5,468,555 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605738,955,604 - 38,965,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477612,354,340 - 12,363,505 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477612,353,441 - 12,365,512 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnf6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1167,588,928 - 7,598,928 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnf6
65 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:94
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000001282
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)121186960016966542Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
RH124308  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2128,825,313 - 8,825,459 (+)MAPPERmRatBN7.2
Rnor_6.01210,581,665 - 10,581,810NCBIRnor6.0
Rnor_5.01212,683,642 - 12,683,787UniSTSRnor5.0
RGSC_v3.4129,195,045 - 9,195,190UniSTSRGSC3.4
Celera1210,652,859 - 10,653,004UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001282   ⟹   ENSRNOP00000001282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl128,817,182 - 8,826,847 (+)Ensembl
Rnor_6.0 Ensembl1210,577,068 - 10,582,208 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092401   ⟹   ENSRNOP00000075825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1213,931,074 - 13,940,652 (+)Ensembl
mRatBN7.2 Ensembl128,816,833 - 8,826,847 (+)Ensembl
Rnor_6.0 Ensembl1210,574,168 - 10,583,208 (+)Ensembl
RefSeq Acc Id: NM_001107118   ⟹   NP_001100588
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,930,610 - 13,940,656 (+)NCBI
mRatBN7.2128,816,797 - 8,826,848 (+)NCBI
Rnor_6.01210,574,168 - 10,583,196 (+)NCBI
Rnor_5.01212,676,145 - 12,685,173 (+)NCBI
RGSC_v3.4129,193,659 - 9,203,700 (-)RGD
Celera1210,644,352 - 10,654,387 (+)RGD
Sequence:
RefSeq Acc Id: XM_039089338   ⟹   XP_038945266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,930,934 - 13,940,663 (+)NCBI
mRatBN7.2128,817,216 - 8,826,870 (+)NCBI
RefSeq Acc Id: XM_039089339   ⟹   XP_038945267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,930,931 - 13,940,663 (+)NCBI
mRatBN7.2128,817,191 - 8,826,870 (+)NCBI
RefSeq Acc Id: XM_063271251   ⟹   XP_063127321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,929,160 - 13,940,663 (+)NCBI
RefSeq Acc Id: NP_001100588   ⟸   NM_001107118
- UniProtKB: A0A0U1RRV4 (UniProtKB/TrEMBL),   A6K1D4 (UniProtKB/TrEMBL),   A6K1D2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075825   ⟸   ENSRNOT00000092401
Ensembl Acc Id: ENSRNOP00000001282   ⟸   ENSRNOT00000001282
RefSeq Acc Id: XP_038945267   ⟸   XM_039089339
- Peptide Label: isoform X2
- UniProtKB: A0A0U1RRV4 (UniProtKB/TrEMBL),   A6K1D4 (UniProtKB/TrEMBL),   A6K1D2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945266   ⟸   XM_039089338
- Peptide Label: isoform X2
- UniProtKB: A0A0U1RRV4 (UniProtKB/TrEMBL),   A6K1D4 (UniProtKB/TrEMBL),   A6K1D2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127321   ⟸   XM_063271251
- Peptide Label: isoform X1
- UniProtKB: D3ZRG6 (UniProtKB/TrEMBL),   A6K1D2 (UniProtKB/TrEMBL)
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZRG6-F1-model_v2 AlphaFold D3ZRG6 1-667 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698415
Promoter ID:EPDNEW_R8933
Type:multiple initiation site
Name:Rnf6_1
Description:ring finger protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01210,574,168 - 10,574,228EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306092 AgrOrtholog
BioCyc Gene G2FUF-20077 BioCyc
Ensembl Genes ENSRNOG00000000968 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092401 ENTREZGENE
  ENSRNOT00000092401.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RING_finger_E3_ligase UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:304271 UniProtKB/TrEMBL
NCBI Gene 304271 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF6 UniProtKB/TrEMBL
  SI:CH211-59O9.10 UniProtKB/TrEMBL
Pfam zf-RING_2 UniProtKB/TrEMBL
PhenoGen Rnf6 PhenoGen
PROSITE ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000968 RatGTEx
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A0U1RRV4 ENTREZGENE, UniProtKB/TrEMBL
  A6K1D2 ENTREZGENE, UniProtKB/TrEMBL
  A6K1D4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRG6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-11 Rnf6  ring finger protein 6  Rnf6  ring finger protein (C3H2C3 type) 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rnf6  ring finger protein (C3H2C3 type) 6   Rnf6_predicted  ring finger protein (C3H2C3 type) 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rnf6_predicted  ring finger protein (C3H2C3 type) 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED