Atf7ip (activating transcription factor 7 interacting protein) - Rat Genome Database

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Gene: Atf7ip (activating transcription factor 7 interacting protein) Rattus norvegicus
Analyze
Symbol: Atf7ip
Name: activating transcription factor 7 interacting protein
RGD ID: 1306030
Description: Predicted to enable ATP hydrolysis activity and transcription corepressor activity. Predicted to be involved in DNA methylation-dependent constitutive heterochromatin formation; negative regulation of DNA-templated transcription; and positive regulation of DNA-templated transcription. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human ATF7IP (activating transcription factor 7 interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: activating transcription factor 7-interacting protein 1; LOC312800
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,117,122 - 171,202,871 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4171,117,122 - 171,202,867 (+)EnsemblGRCr8
mRatBN7.24169,385,872 - 169,471,652 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,385,872 - 169,471,650 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4175,681,092 - 175,766,989 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,462,367 - 171,548,111 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,086,734 - 170,172,633 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,476,998 - 170,563,063 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,518,673 - 170,559,532 (+)Ensemblrn6Rnor6.0
Rnor_5.04234,735,376 - 234,821,786 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44173,566,920 - 173,586,494 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4157,969,742 - 158,055,453 (+)NCBICelera
RGSC_v3.14173,804,941 - 173,851,537 (+)NCBI
Cytogenetic Map4q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-D-glucosamine  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
GSK-J4  (ISO)
hexadecanoic acid  (ISO)
inulin  (ISO)
kainic acid  (EXP)
L-methionine  (ISO)
leflunomide  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-ethyl-N-nitrosourea  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resorcinol  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
transcription regulator complex  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10777215   PMID:12665582   PMID:27732843  


Genomics

Comparative Map Data
Atf7ip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,117,122 - 171,202,871 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4171,117,122 - 171,202,867 (+)EnsemblGRCr8
mRatBN7.24169,385,872 - 169,471,652 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,385,872 - 169,471,650 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4175,681,092 - 175,766,989 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,462,367 - 171,548,111 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,086,734 - 170,172,633 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,476,998 - 170,563,063 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,518,673 - 170,559,532 (+)Ensemblrn6Rnor6.0
Rnor_5.04234,735,376 - 234,821,786 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44173,566,920 - 173,586,494 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4157,969,742 - 158,055,453 (+)NCBICelera
RGSC_v3.14173,804,941 - 173,851,537 (+)NCBI
Cytogenetic Map4q43NCBI
ATF7IP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,365,682 - 14,502,930 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,365,627 - 14,502,931 (+)Ensemblhg38GRCh38
GRCh371214,518,616 - 14,655,864 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,409,878 - 14,542,964 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341214,409,877 - 14,542,964NCBI
Celera1219,663,702 - 19,796,793 (+)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1214,287,849 - 14,420,834 (+)NCBIHuRef
CHM1_11214,483,626 - 14,616,682 (+)NCBICHM1_1
T2T-CHM13v2.01214,243,190 - 14,380,441 (+)NCBIT2T-CHM13v2.0
Atf7ip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,495,787 - 136,587,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,483,165 - 136,587,860 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386136,518,789 - 136,610,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,506,167 - 136,610,862 (+)Ensemblmm10GRCm38
MGSCv376136,467,372 - 136,555,900 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366136,483,047 - 136,571,575 (+)NCBIMGSCv36mm8
Celera6139,516,572 - 139,604,675 (+)NCBICelera
Cytogenetic Map6G1NCBI
Atf7ip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,117,223 - 11,261,606 (+)Ensembl
ChiLan1.0NW_00495541311,117,369 - 11,261,787 (+)NCBIChiLan1.0ChiLan1.0
ATF7IP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21019,837,515 - 19,953,671 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11219,834,441 - 19,950,431 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,373,084 - 14,504,286 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11214,789,490 - 14,900,632 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1214,789,794 - 14,900,411 (+)EnsemblpanPan2panpan1.1
ATF7IP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12732,082,615 - 32,194,954 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2732,086,675 - 32,177,364 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2714,254,240 - 14,366,422 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02732,391,192 - 32,503,039 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2732,391,199 - 32,503,070 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12732,280,027 - 32,391,910 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02732,238,657 - 32,345,043 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02713,985,629 - 14,097,829 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atf7ip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494593,191,596 - 93,299,107 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365872,919,666 - 3,026,837 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365872,922,855 - 3,026,773 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF7IP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl558,022,741 - 58,133,399 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1558,022,734 - 58,149,980 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2561,444,254 - 61,571,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATF7IP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,264,795 - 14,397,062 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,264,706 - 14,392,206 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606920,914,411 - 21,048,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atf7ip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,470,201 - 23,573,648 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475223,469,237 - 23,605,803 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Atf7ip
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1612,855,729 - 12,906,773 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Atf7ip
830 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:112
Interacting mature miRNAs:120
Transcripts:ENSRNOT00000011803, ENSRNOT00000055701
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
RH143659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,431,654 - 169,431,802 (+)MAPPERmRatBN7.2
Rnor_6.04170,523,088 - 170,523,235NCBIRnor6.0
Rnor_5.04234,781,827 - 234,781,974UniSTSRnor5.0
RGSC_v3.44173,570,166 - 173,570,313UniSTSRGSC3.4
Celera4158,015,487 - 158,015,634UniSTS
RH 3.4 Map41029.9UniSTS
Cytogenetic Map4q43UniSTS
BE110602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,392,704 - 169,392,885 (+)MAPPERmRatBN7.2
Rnor_6.04170,484,156 - 170,484,336NCBIRnor6.0
Rnor_5.04234,742,460 - 234,742,640UniSTSRnor5.0
RGSC_v3.44173,530,845 - 173,531,025UniSTSRGSC3.4
Celera4157,976,569 - 157,976,749UniSTS
RH 3.4 Map41030.8UniSTS
Cytogenetic Map4q43UniSTS
AU049940  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,461,417 - 169,461,659 (+)MAPPERmRatBN7.2
Rnor_6.04170,552,828 - 170,553,066NCBIRnor6.0
Rnor_5.04234,811,551 - 234,811,789UniSTSRnor5.0
RGSC_v3.44173,599,906 - 173,600,144UniSTSRGSC3.4
Celera4158,045,223 - 158,045,461UniSTS
Cytogenetic Map4q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003749858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ190019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011803   ⟹   ENSRNOP00000011803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4171,117,131 - 171,199,319 (+)Ensembl
mRatBN7.2 Ensembl4169,400,180 - 169,468,247 (+)Ensembl
Rnor_6.0 Ensembl4170,518,673 - 170,559,532 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113634   ⟹   ENSRNOP00000079952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4171,131,370 - 171,199,602 (+)Ensembl
mRatBN7.2 Ensembl4169,385,872 - 169,471,650 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000146270   ⟹   ENSRNOP00000107375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4171,117,122 - 171,202,867 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154368   ⟹   ENSRNOP00000104552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4171,117,156 - 171,199,602 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164196   ⟹   ENSRNOP00000110923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4171,149,772 - 171,199,633 (+)Ensembl
RefSeq Acc Id: NM_001107893   ⟹   NP_001101363
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,117,122 - 171,202,869 (+)NCBI
mRatBN7.24169,385,872 - 169,471,652 (+)NCBI
RefSeq Acc Id: XM_063286153   ⟹   XP_063142223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,128,236 - 171,202,871 (+)NCBI
RefSeq Acc Id: XM_063286154   ⟹   XP_063142224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,133,326 - 171,202,871 (+)NCBI
RefSeq Acc Id: XM_063286155   ⟹   XP_063142225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,152,490 - 171,202,871 (+)NCBI
RefSeq Acc Id: XM_063286156   ⟹   XP_063142226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,128,236 - 171,202,871 (+)NCBI
RefSeq Acc Id: XM_063286157   ⟹   XP_063142227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,133,321 - 171,202,871 (+)NCBI
Ensembl Acc Id: ENSRNOP00000011803   ⟸   ENSRNOT00000011803
RefSeq Acc Id: NP_001101363   ⟸   NM_001107893
- UniProtKB: A0A8I5ZNS2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079952   ⟸   ENSRNOT00000113634
RefSeq Acc Id: XP_063142223   ⟸   XM_063286153
- Peptide Label: isoform X1
- UniProtKB: D3ZS88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142226   ⟸   XM_063286156
- Peptide Label: isoform X4
- UniProtKB: D3ZS88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142227   ⟸   XM_063286157
- Peptide Label: isoform X5
- UniProtKB: D3ZS88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142224   ⟸   XM_063286154
- Peptide Label: isoform X2
- UniProtKB: D3ZS88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142225   ⟸   XM_063286155
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNS2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107375   ⟸   ENSRNOT00000146270
Ensembl Acc Id: ENSRNOP00000104552   ⟸   ENSRNOT00000154368
Ensembl Acc Id: ENSRNOP00000110923   ⟸   ENSRNOT00000164196

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZS88-F1-model_v2 AlphaFold D3ZS88 1-1309 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306030 AgrOrtholog
BioCyc Gene G2FUF-42601 BioCyc
Ensembl Genes ENSRNOG00000008870 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011803.10 UniProtKB/TrEMBL
  ENSRNOT00000113634 ENTREZGENE
  ENSRNOT00000113634.2 UniProtKB/TrEMBL
  ENSRNOT00000146270 ENTREZGENE
  ENSRNOT00000146270.1 UniProtKB/TrEMBL
  ENSRNOT00000154368.1 UniProtKB/TrEMBL
  ENSRNOT00000164196 ENTREZGENE
  ENSRNOT00000164196.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro ATF7-int UniProtKB/TrEMBL
  ATF7IP_BD UniProtKB/TrEMBL
  Fibronectin_type3 UniProtKB/TrEMBL
  Fn3_ATF7IP UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
NCBI Gene 312800 ENTREZGENE
PANTHER ACTIVATING TRANSCRIPTION FACTOR 7-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR23210 UniProtKB/TrEMBL
Pfam ATF7IP_BD UniProtKB/TrEMBL
  fn3_4 UniProtKB/TrEMBL
PhenoGen Atf7ip PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008870 RatGTEx
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
UniProt A0A8I5ZNS2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LI98_RAT UniProtKB/TrEMBL
  A0ABK0LJ81_RAT UniProtKB/TrEMBL
  A0ABK0LND9_RAT UniProtKB/TrEMBL
  D3ZS88 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Atf7ip  activating transcription factor 7 interacting protein   Atf7ip_predicted  activating transcription factor 7 interacting protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Atf7ip_predicted  activating transcription factor 7 interacting protein (predicted)      Symbol and Name status set to approved 70820 APPROVED