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Gene: Agpat3 (1-acylglycerol-3-phosphate O-acyltransferase 3) Rattus norvegicus

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Symbol:

Agpat3

Name:

1-acylglycerol-3-phosphate O-acyltransferase 3

RGD ID:

1305787

Description:

Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Predicted to be active in endoplasmic reticulum. Orthologous to human AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3); PARTICIPATES IN glycerolipid metabolic pathway; glycerophospholipid metabolic pathway; INTERACTS WITH (+)-catechin; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

1-acyl-sn-glycerol-3-phosphate acyltransferase gamma; LOC294324

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Agpat3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Agpat3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Agpat3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Agpat3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Agpat3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Agpat3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	agpat3 (1-acylglycerol-3-phosphate O-acyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Agpat3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Agpat4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YDR018C	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YDR018C	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CST26	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CST26	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	agpat3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	agpat3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	10,330,650 - 10,415,026 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	10,394,465 - 10,410,632 (+)	Ensembl				GRCr8
mRatBN7.2	20	10,330,960 - 10,415,358 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	10,384,507 - 10,415,358 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	11,084,249 - 11,115,411 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	10,445,150 - 10,476,312 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	10,916,520 - 10,947,716 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	11,060,584 - 11,144,806 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	11,114,164 - 11,144,806 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	13,230,349 - 13,314,837 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	10,720,044 - 10,751,589 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	11,892,679 - 11,922,116 (+)	NCBI		Celera
RGSC_v3.1	20	10,731,526 - 10,748,014 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

neurodegenerative disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (EXP)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

fenvalerate (EXP)

finasteride (EXP)

flutamide (EXP)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrazine (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

indometacin (EXP)

isoniazide (EXP)

isotretinoin (ISO)

leflunomide (EXP)

menadione (ISO)

methapyrilene (EXP)

methidathion (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

nickel atom (ISO)

nitrates (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

silibinin (EXP)

sodium arsenite (ISO)

Soman (EXP)

testosterone (ISO)

tetrachloromethane (EXP)

thiram (ISO)

torcetrapib (ISO)

toxaphene (EXP)

tributylstannane (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

zidovudine (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phospholipid biosynthetic process (IEA)

Cellular Component

endomembrane system (IBA)

endoplasmic reticulum (IBA,IEA,ISO)

endoplasmic reticulum membrane (IEA,ISO)

nuclear envelope (IEA,ISO)

Molecular Function

1-acylglycerol-3-phosphate O-acyltransferase activity (IBA,IEA,ISO)

acyltransferase activity (IEA)

lysophosphatidic acid acyltransferase activity (IEA,ISO)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

glycerolipid metabolic pathway (IEA)

glycerophospholipid metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16780588	PMID:19114731	PMID:19946888	PMID:21173190

Genomics

Comparative Map Data

Agpat3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	10,330,650 - 10,415,026 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	10,394,465 - 10,410,632 (+)	Ensembl				GRCr8
mRatBN7.2	20	10,330,960 - 10,415,358 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	10,384,507 - 10,415,358 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	11,084,249 - 11,115,411 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	10,445,150 - 10,476,312 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	10,916,520 - 10,947,716 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	11,060,584 - 11,144,806 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	11,114,164 - 11,144,806 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	13,230,349 - 13,314,837 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	10,720,044 - 10,751,589 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	11,892,679 - 11,922,116 (+)	NCBI		Celera
RGSC_v3.1	20	10,731,526 - 10,748,014 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

AGPAT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	43,865,223 - 43,987,592 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	43,865,223 - 43,987,592 (+)	Ensembl			hg38	GRCh38
GRCh37	21	45,285,104 - 45,407,473 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	44,109,544 - 44,231,903 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	44,109,543 - 44,228,980	NCBI
Celera	21	30,390,772 - 30,513,125 (+)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	30,692,081 - 30,777,963 (+)	NCBI		HuRef
CHM1_1	21	44,845,955 - 44,968,331 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	42,220,581 - 42,343,213 (+)	NCBI		T2T-CHM13v2.0

Agpat3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	78,105,008 - 78,188,335 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	78,105,012 - 78,188,323 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	78,269,174 - 78,352,497 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	78,269,178 - 78,352,489 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	77,734,308 - 77,814,445 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	77,674,692 - 77,754,829 (-)	NCBI		MGSCv36	mm8
Celera	10	79,293,723 - 79,373,796 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Agpat3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	41,365,887 - 41,434,090 (-)	Ensembl
ChiLan1.0	NW_004955407	41,365,920 - 41,434,090 (-)	NCBI	ChiLan1.0	ChiLan1.0

AGPAT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	39,870,866 - 39,992,820 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	34,721,419 - 34,843,964 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	30,120,899 - 30,243,438 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	43,420,398 - 43,540,453 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	43,479,513 - 43,540,453 (+)	Ensembl			panPan2	panpan1.1

AGPAT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	37,855,323 - 37,879,816 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	37,844,109 - 37,879,741 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	36,957,368 - 37,042,325 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	37,347,096 - 37,432,308 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	37,296,291 - 37,427,627 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	37,214,301 - 37,299,491 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	37,198,278 - 37,283,390 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	37,692,630 - 37,777,937 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Agpat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	37,043,670 - 37,099,574 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	367,651 - 414,630 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	367,645 - 421,539 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AGPAT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	206,884,538 - 206,906,353 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	206,803,219 - 206,906,363 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

AGPAT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	87,622,839 - 87,735,552 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	87,654,097 - 87,730,785 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	15,704,361 - 15,824,391 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Agpat3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	30,037,415 - 30,082,239 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	30,038,357 - 30,107,499 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Agpat3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	1,547,035 - 1,631,082 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Agpat3
610 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	734
Count of miRNA genes:	290
Interacting mature miRNAs:	380
Transcripts:	ENSRNOT00000001602
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
631265	Iresp1	Immunoglobin response QTL1	8.3		blood anti-double stranded DNA antibody amount (VT:0004762)	serum anti-DNA antibody level (CMO:0001533)	20	9041099	11115921	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8043920	15089182	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

AW061257

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	10,414,452 - 10,414,569 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	11,143,901 - 11,144,017	NCBI	Rnor6.0
Rnor_5.0	20	13,313,932 - 13,314,048	UniSTS	Rnor5.0
RGSC_v3.4	20	10,750,684 - 10,750,800	UniSTS	RGSC3.4
Celera	20	11,921,211 - 11,921,327	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH130824

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	10,414,497 - 10,414,694 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	11,143,946 - 11,144,142	NCBI	Rnor6.0
Rnor_5.0	20	13,313,977 - 13,314,173	UniSTS	Rnor5.0
RGSC_v3.4	20	10,750,729 - 10,750,925	UniSTS	RGSC3.4
Celera	20	11,921,256 - 11,921,452	UniSTS
RH 3.4 Map	20	148.3	UniSTS
Cytogenetic Map	20	p12	UniSTS

AW533203

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	10,412,738 - 10,412,872 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	11,142,187 - 11,142,320	NCBI	Rnor6.0
Rnor_5.0	20	13,312,218 - 13,312,351	UniSTS	Rnor5.0
RGSC_v3.4	20	10,748,970 - 10,749,103	UniSTS	RGSC3.4
Celera	20	11,919,497 - 11,919,630	UniSTS
RH 3.4 Map	20	139.8	UniSTS
Cytogenetic Map	20	p12	UniSTS

UniSTS:259035

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	10,400,289 - 10,401,411 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	11,129,994 - 11,131,115	NCBI	Rnor6.0
Rnor_5.0	20	13,300,025 - 13,301,146	UniSTS	Rnor5.0
RGSC_v3.4	20	10,736,777 - 10,737,898	UniSTS	RGSC3.4
Celera	20	11,907,292 - 11,908,413	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	12	83	202	91	90	59	99	59	6	409	215	11	181	105	120	31	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001602 ⟹ ENSRNOP00000001602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	10,394,465 - 10,410,632 (+)	Ensembl
mRatBN7.2 Ensembl	20	10,384,507 - 10,415,358 (+)	Ensembl
Rnor_6.0 Ensembl	20	11,114,164 - 11,144,806 (+)	Ensembl

RefSeq Acc Id:

NM_001106378 ⟹ NP_001099848

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	10,384,181 - 10,415,026 (+)	NCBI
mRatBN7.2	20	10,384,507 - 10,415,358 (+)	NCBI
Rnor_6.0	20	11,114,164 - 11,144,806 (+)	NCBI
Rnor_5.0	20	13,230,349 - 13,314,837 (+)	NCBI
RGSC_v3.4	20	10,720,044 - 10,751,589 (+)	RGD
Celera	20	11,892,679 - 11,922,116 (+)	RGD

Sequence:

show sequence

GTGGAGCAATGAAGTGTAAGGCTGCCGAGAGTGTGGGTAATCTGGCCTGGGCACCTTGGCTGCT
GTGCACTTGCTCTCCTGCCCCCCTCCGCAAGCCCTGCTGTTCTCATGTGCCAAGTGTGAGCATG
AGCTGGCCACACAGCCGGCCCTGACGTTTCACCCACTTGGCAGAATGGCTATTTTTGTACTCTG
GGACCCAGCTGAGTGGTCACTATACTATCCCCACTCCTGCCAGCTGAGTCCTGTTGCCCTGCTG
TGGGAGAAGGCTCCAGACTTCCCCAGCCAAGACCCCAACCATCTGAAATCCAGAGGCCAGGGAG
AGAAGGCAAGCAGAAGAGCAGGACGGCTGTTCTCAGTGAAGGACCGTGCGGCCGCCCCTGAGCA
GCGACCATGGGCCTGCTTGCCTACCTGAAGACCCAGTTCGTGGTGCACCTGCTCATTGGCTTCG
TCTTCGTGGTGAGCGGGCTGATTATCAACTTCACCCAGCTGTGCACGCTGGCCCTCTGGCCCAT
CAGCAAGAACCTATACCGCCGGATCAACTGCCGCCTGGCCTACTCGCTCTGGAGCCAGCTGGTC
ATGCTCCTGGAGTGGTGGTCCTGCACGGAGTGCACTCTCTTCACCGACCAGGCCACCGTGAACC
ACTTTGGGAAGGAGCACGTGGTTGTTATCCTCAACCACAACTTCGAGATCGACTTCCTTTGTGG
GTGGACCATGTGCGAGCGGTTTGGCGTGCTGGGGAGCTCCAAGGTGCTGGCTAAGAGGGAGCTG
CTGTATGTGCCTCTCATCGGCTGGACATGGTACTTCCTAGAGATCGTATTCTGCAAGCGGAAGT
GGGAGGAAGACCGGGACACTGTCATAGAGGGGCTGAGGCGCTTGGCTAACTACCCGGAGTATAT
GTGGTTCCTCCTGTACTGCGAAGGAACACGATTCACAGAGACCAAGCATCGCGTCAGCATGGAG
GTGGCTGCCTCCAAGGGGCTCCCCCCACTCAAGTACCACCTGCTGCCCCGGACCAAGGGTTTTA
CCACTGCAGTCCAGTGCCTCCGGGGGACGGTTGCAGCTATCTACGACGTGACTCTGAACTTCAG
AGGGAACAAGAACCCATCTCTCCTGGGGATCCTGTATGGAAAGAAGTATGAGGCAGACATGTGT
GTGAGGAGGTTCCCCCTGGAAGATATCCCAGCAGACGAGACCGGCGCGGCCCAGTGGCTTCACA
AGCTGTACCAGGAGAAGGATGCCCTGCAAGAGATGTACAAGCAGAGCGGCGTTTTCCCCGGGGA
GCAGATCAAGCCTGCGCGGAGGCCGTGGACTCTTCTCAACTTCCTGTGCTGGGCCACATTCCTC
CTCTCTCCCCTCTTCAGCTTCGTCCTGGGCGTCTTTGCCAGTGGATCCCCTCTCCTCATCCTGA
CGTTCTTGGGGTTTGTGGGAGCAGCTTCCTTCGGAGTCCGAAGACTGATAGGAGTGACTGAGAT
AGAGAAAGGCTCCAGCTACGGCAACCAAGAGCTTAAGAAAAAGGAATAATTAACGCTGTGATTG
AACACCCATATCCTGACGCGGTATCCAATTAACTCAATTAAAACAGAACACCCAAGAGCGAGGG
AAAGAGACACTTAGAGACTATTTTTCTTATTAACTGGTGACTAATATTAACAAAACTTGAGCCA
AGAGCAAAGAACTCGGCCTGCCAGGTGAAGATGGTTGGCCAGCACCGGCAGGGTCCCATCGGCC
CTCTGCGGGGACAGAGGCGGGCTTGGGTGGGGGGGGTGGGGCTGTGGGGCTCCCCCAGAACTCT
GCCTCCAAGAGGCAGCCTTGGCTGCTCTCCCTTCTTAAACTTAGAATGAGGCTTTTGTTTCTTA
TCGGTTATTTGGGGAATGGACCTGGCCCCAACCTTGTGCCCTCCACCCCAGAACACTGGCTCTC
CAAGGGTGCCGCTGCCTCACGGGGGCAGGTCAGCTGGATTCTTGTCCCACAGCGCTCTTTTGTC
CTGCCCTGCTTGGCACCTTAGCTTCCAGCCCCTGGGGAGGGAGGAAGTCTTCTTAGAGATAAGC
ACACACTGAATGTGGATCTGGCCCCTTTGTCCCTCCCTTGCCCTGGGGGCTGAAGACCACACCT
CCGTCCTCTGCAGCGCCCACCGGTGGCACCGCCTTGCTGGGGTTGTGTCTAAGCACCTTAAGTC
TCTTTTAAAAGTGAACGCCCGAGAACTCTGCAGAATGTGGAACCCTTGAGTTCGTACAGCGTCT
CCATACAGCTCTGTTATCTCCTCCTCTGTAGCCAGCAGGCTGCCGTCCCGCACGGGGCCTGATG
GGAAGACCACACTCGGGCCCCACACTTCAGACCTGTGGTGCCTGGGGGGGGGGGGGTGCTCCAG
CCTATGGGACTCCCCTGGGACACTTCATGGGGTGGTGTCACCATCAGGCCTCCTTGTTCTCAAT
CAGACGCCTTTAGTGCTTGTTAGCATTAGAGTCTCTTTACAGGTGTTGGTCTGTGGCTGGCTCG
CAGCTTCTCCCTGTCCTCCTCCTCCTCTGCCTCCATTCAGGCAGGTGTCATGGCTGCCGACCAT
ACCCACCGTTGCCCCTTACCACCTCAGTGACATACACTGACCTGGCAGAGAACAGGGGGCCCCA
GCCCGCATTTGGTACCTTGCCAGGGTCCCTCTGCTGGCCCTGGAGGCCCATTTCCTTCTTGTTC
AGCACAGGAAGGACCTGCCTGGTTTCTGGGAGACCCAGGTCCTCGGGAAACACCATCACATACT
TTTACCTTTGGTCTGGAACTGGCTCTTTTAAAGTCATTTCATGTTTTCTAACAAGGAAAAACTG
GGTAATTTTTTTTTTTTTTGCATACTGCAACCAGAGTTCATAGTAAAAGCAGAGAAGATGTTAT
AGGATACACTGGAAGAAGGAGACCTGGAGAAGCCTGAGGGCTGACCTGGGCCTGGCTGCATGGC
CCCAAGTGCTGGGGACCTTATAAGGCAGCATGCCCAGTTCACAGAAGATGCTACTAGCCTCTAC
GGTCCATGCACAATGGAGTGGCTGCTCCTGTCACTCTTGGGTAACAGCAACACACATTTGTAAG
GGTAAAGGGTTAAGTCAAGCTAACTGAGACACTGAATCTCTTCCCCTCCAGCTGAAGGCTTGCG
TGCCCTGGCCTCTGCCAACTGTAAGCTACCTTGGGTACTCCCGAGGGTCAGCTCCCCACTGGTA
GGTTTTTCCTTCTGTCTTTCTGTCTGCTTGGGGTCTCTGTCTTCCCCCACTCACTATTCCCTCA
CAAATCGGAAGGAAACAGTCCAACGGGTCCTGCTGTGCATGCACCTGGCCCCAGGAAAGCCACC
TCAGAGCCTTTACTGCTTCACTAATGCCTCTGGCTTCCTACAGAGCCTTTGAGGTCAGCTGACT
GTTGAGTCCATGAATGACCGAGGAGTCCAGGCTGCAGGCTCTGTCCTCCTAGGCCTCCCCCTGC
TCATGATCCAATACAGCGCTTCCGAGAGCAATAAAAACTACACTAGGAATGTGGGAGTGGGCTT
TTTGGTTTTTTGGGGTGGGGTCAGATCTTGCTTTTTCATCTGCTTCAGAAAGAAAAAGGGGGAG
GAGAGCCCCTTCGATTTTTCTATTAAATTAATAAATCTCAGAATAATGCTTTTCTCTTTTCCTT
CACACCCTACTACTGATAGGCATGACAGATGTCATGGGCAGATTCAGACAGAAGGGTCTGCGGA
AGCAGTGGGCTTGCTAGCCTTCAGGGAGCCCATGCTGGAAGCAGCAGGCTCAGGAGCCAGAGGC
ATTCTGGAACCGGAGTGGTTGGTGGCCTCAGGAGGGAGGGCCTGGACTGCTAGGCTGGCTCTGC
TTCTGGTTCTCCAGCAGAGGGGCCCCCACAAGACTGGGATATGGTCTCCTCCCTACTCAGGGTC
AAGAGTCAGATACACGAGGGCTCCCACCATCTCCCCGAGAGACCCTTCCGCTGTCCAGGCGGTC
TCCCACCCCTGGTCCCCAGCCACACCCACGTACCTCACGCAGGCCTCGCTGAAGCTATGCTGAA
CTTCAGCAGTGGCTGCCACTCTCCTGCCTGCTTGTGGCATTTCATGGCACCCATATTGAGCATC
TAGGCTCTCTCTGAGGGCTTTGTGTTAGCATCCTGATGGGTGGCCATCCTGGAAGAAGCAGGAG
CATCATACTAGGAAGGCTGAATGGTCAGAATGTGGGTAATTAGAGATCAGGGACACTCTTCTTT
TGACAAGACCTGTTTAACCCAAAGGGTAAGCAAACAGAACAAACGCTTACTGTTTGTGGATCTT
TGGTGACTGCATCTGGGAGGCACATCTGAGATGCTGTAAGCCCAGTCCTGGGGGAGGGGAGACA
AGGGGGCGGAACCCGTCTGATTACAGAGATGAGCTTTGAATTCTCAGGCTGCCTGTTAACAAAC
TGTAACAATGTAACAAGGCTTTCTTGTAGGAACAATGCAGGTGTCTTCACAGATGCCTTGGCTG
CCCCTCCCAGCCCCTTTTGTGCACCTTGCCCTGAGAATCTTTTCTGCCTCTGATGCAGTCCAGC
CTTCATACTATCCCAGGAAAAGTCAGGGTTAGCCCCGATTTGTGTCAGGTTCCGGATGAAGAAT
TAAGTGACTCTTCCTGCATGTTGCCCTGTCTCAGCCTGAGGCTTTATAGGACGAGCCAAAAGTA
ACCTTTCCAGCCCTGATGACCTGCACCTCAACTGTTTGTCCCACACATAGACCCGACCACTAGC
TAGATGCATGCGACGCTTAACGCTAGCCATTTGGTGTGGCTTCTAGCCCTCTGCAGTGTCATGA
AGCTCAGGGTTAGAATGGCGCACCTGTGATGCCTGCTGCCTTCTTTCTAGAAACATCTCTGGCC
CATAGGCCAGCCCCAAACCAAAGGCACCTGGGCCTGGGTGAGGGCACCCCTGACCTGCCTCAGG
CCTTGTCCCAGAGTCTTGCCATGGGGCTGTCAGGAGGGTGCTGACATTCATGCCCTAGATTCCC
TGCATACAGGGGCCAGGATTTTAAAATGCCAGTTCAGGCTTTGGGCGATCTACTTGGCTGACAG
GGTGGACACATGAATCGAATTTATTACAGGCTTTTGAAATCGGTTAATCCAGGGGAAAGGTGGG
ATTCTCACAGACCACTCCAGAAATCAACCCAACGAGAGCACTTTGCAGAGCCATCAGAGATGGT
GGCCTCCTCTCTTTACAGACAGCGACCTGTGAAACTGTGAACTTTGTACTGACAGGTCACCTGG
AGTTTTCTTTTTTCTCCCGTAGCTTTTTGGTTTCTTTCTGTTGCAAAAGTGTTTGGACAGAAGC
AGAACTGTGAACGAGATCCTGAAATGCACTAAATTGTATTCTATTAAACTGGAGTTACTTGATT
CAATGAAAGAGTTGCGTCGCTCCACTTGTATTTATTGTCTCAGAGTAGTAACATTGTGACAATC
AAACATGACTGTACCTCCTGGCTTCTCTGCACCGAGCATCAGTGAGTTCTGTAACTACAGGAAC
GGCTCTTTCTGGAAGCCGCACAAACCATGAACTTCAATGATCAAGTGCTGCGTGTGTGCGTGAG
TGCGTGCATGCGTGGGTGGGTGGGGCAACTATCTGGGCTGCTTTTCCATTACCAAGAAATCGCC
ATATCTGACTGTGGGCAGTCTCCAAGAGATGCATTTGTCTACAGGGTGCAACTGTGTTATTTGG
GTGATTCCTTTTGTACTCTTCTTTTTACAAGTTTGCTACTCACAAGCTTTCCGGAGTAAGGATG
GAGGGCTGTGCTCTAGGAAGTTGTCCAGGTCTGGGAGCCAAAGTAGACTTCCCAAGGCCTGGGT
CTACGGCCTGGCTGTGTTGACTGCTATGCAAAGCTCTCTCTGTCCACAGCATGTAGAAGGTCAC
TCAAGCGGCGTGGCGCTCCTGCTTGGTGGTACTTTCTAGGTAAAATGCATAAGTATCATACACT
TGTTTATTACAATGTTGTGAAAGGAGGGATAAAATGTCCACAATATACAAG

hide sequence

RefSeq Acc Id:

XM_006256243 ⟹ XP_006256305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	10,330,650 - 10,414,407 (+)	NCBI
mRatBN7.2	20	10,330,960 - 10,414,741 (+)	NCBI
Rnor_6.0	20	11,060,584 - 11,144,187 (+)	NCBI
Rnor_5.0	20	13,230,349 - 13,314,837 (+)	NCBI

Sequence:

show sequence

CGGCGGCGCCGAGGCGGAGGGCGGCGATGGGGGCCCGGGGCGGCGGGCGCCGCACTCGCTGAGG
CCCCGACGCAGGGCCGGGCCGGGCCCAGGCCGCGCGCGCCGACGCGAGAACCGCGACCAGCAGG
TGGAGTGCAGGCCCTGCAGGTCGGACACCCTTGAGGACAGCCATCGCCTGGCCCTGCTAGCCTG
TGCCTTGGACGGCTGTTCTCAGTGAAGGACCGTGCGGCCGCCCCTGAGCAGCGACCATGGGCCT
GCTTGCCTACCTGAAGACCCAGTTCGTGGTGCACCTGCTCATTGGCTTCGTCTTCGTGGTGAGC
GGGCTGATTATCAACTTCACCCAGCTGTGCACGCTGGCCCTCTGGCCCATCAGCAAGAACCTAT
ACCGCCGGATCAACTGCCGCCTGGCCTACTCGCTCTGGAGCCAGCTGGTCATGCTCCTGGAGTG
GTGGTCCTGCACGGAGTGCACTCTCTTCACCGACCAGGCCACCGTGAACCACTTTGGGAAGGAG
CACGTGGTTGTTATCCTCAACCACAACTTCGAGATCGACTTCCTTTGTGGGTGGACCATGTGCG
AGCGGTTTGGCGTGCTGGGGAGCTCCAAGGTGCTGGCTAAGAGGGAGCTGCTGTATGTGCCTCT
CATCGGCTGGACATGGTACTTCCTAGAGATCGTATTCTGCAAGCGGAAGTGGGAGGAAGACCGG
GACACTGTCATAGAGGGGCTGAGGCGCTTGGCTAACTACCCGGAGTATATGTGGTTCCTCCTGT
ACTGCGAAGGAACACGATTCACAGAGACCAAGCATCGCGTCAGCATGGAGGTGGCTGCCTCCAA
GGGGCTCCCCCCACTCAAGTACCACCTGCTGCCCCGGACCAAGGGTTTTACCACTGCAGTCCAG
TGCCTCCGGGGGACGGTTGCAGCTATCTACGACGTGACTCTGAACTTCAGAGGGAACAAGAACC
CATCTCTCCTGGGGATCCTGTATGGAAAGAAGTATGAGGCAGACATGTGTGTGAGGAGGTTCCC
CCTGGAAGATATCCCAGCAGACGAGACCGGCGCGGCCCAGTGGCTTCACAAGCTGTACCAGGAG
AAGGATGCCCTGCAAGAGATGTACAAGCAGAGCGGCGTTTTCCCCGGGGAGCAGATCAAGCCTG
CGCGGAGGCCGTGGACTCTTCTCAACTTCCTGTGCTGGGCCACATTCCTCCTCTCTCCCCTCTT
CAGCTTCGTCCTGGGCGTCTTTGCCAGTGGATCCCCTCTCCTCATCCTGACGTTCTTGGGGTTT
GTGGGAGCAGCTTCCTTCGGAGTCCGAAGACTGATAGGAGTGACTGAGATAGAGAAAGGCTCCA
GCTACGGCAACCAAGAGCTTAAGAAAAAGGAATAATTAACGCTGTGATTGAACACCCATATCCT
GACGCGGTATCCAATTAACTCAATTAAAACAGAACACCCAAGAGCGAGGGAAAGAGACACTTAG
AGACTATTTTTCTTATTAACTGGTGACTAATATTAACAAAACTTGAGCCAAGAGCAAAGAACTC
GGCCTGCCAGGTGAAGATGGTTGGCCAGCACCGGCAGGGTCCCATCGGCCCTCTGCGGGGACAG
AGGCGGGCTTGGGTGGGGGGGGTGGGGCTGTGGGGCTCCCCCAGAACTCTGCCTCCAAGAGGCA
GCCTTGGCTGCTCTCCCTTCTTAAACTTAGAATGAGGCTTTTGTTTCTTATCGGTTATTTGGGG
AATGGACCTGGCCCCAACCTTGTGCCCTCCACCCCAGAACACTGGCTCTCCAAGGGTGCCGCTG
CCTCACGGGGGCAGGTCAGCTGGATTCTTGTCCCACAGCGCTCTTTTGTCCTGCCCTGCTTGGC
ACCTTAGCTTCCAGCCCCTGGGGAGGGAGGAAGTCTTCTTAGAGATAAGCACACACTGAATGTG
GATCTGGCCCCTTTGTCCCTCCCTTGCCCTGGGGGCTGAAGACCACACCTCCGTCCTCTGCAGC
GCCCACCGGTGGCACCGCCTTGCTGGGGTTGTGTCTAAGCACCTTAAGTCTCTTTTAAAAGTGA
ACGCCCGAGAACTCTGCAGAATGTGGAACCCTTGAGTTCGTACAGCGTCTCCATACAGCTCTGT
TATCTCCTCCTCTGTAGCCAGCAGGCTGCCGTCCCGCACGGGGCCTGATGGGAAGACCACACTC
GGGCCCCACACTTCAGACCTGTGGTGCCTGGGGGGGGGGGGGTGCTCCAGCCTATGGGACTCCC
CTGGGACACTTCATGGGGTGGTGTCACCATCAGGCCTCCTTGTTCTCAATCAGACGCCTTTAGT
GCTTGTTAGCATTAGAGTCTCTTTACAGGTGTTGGTCTGTGGCTGGCTCGCAGCTTCTCCCTGT
CCTCCTCCTCCTCTGCCTCCATTCAGGCAGGTGTCATGGCTGCCGACCATACCCACCGTTGCCC
CTTACCACCTCAGTGACATACACTGACCTGGCAGAGAACAGGGGGCCCCAGCCCGCATTTGGTA
CCTTGCCAGGGTCCCTCTGCTGGCCCTGGAGGCCCATTTCCTTCTTGTTCAGCACAGGAAGGAC
CTGCCTGGTTTCTGGGAGACCCAGGTCCTCGGGAAACACCATCACATACTTTTACCTTTGGTCT
GGAACTGGCTCTTTTAAAGTCATTTCATGTTTTCTAACAAGGAAAAACTGGGTAATTTTTTTTT
TTTTTGCATACTGCAACCAGAGTTCATAGTAAAAGCAGAGAAGATGTTATAGGATACACTGGAA
GAAGGAGACCTGGAGAAGCCTGAGGGCTGACCTGGGCCTGGCTGCATGGCCCCAAGTGCTGGGG
ACCTTATAAGGCAGCATGCCCAGTTCACAGAAGATGCTACTAGCCTCTACGGTCCATGCACAAT
GGAGTGGCTGCTCCTGTCACTCTTGGGTAACAGCAACACACATTTGTAAGGGTAAAGGGTTAAG
TCAAGCTAACTGAGACACTGAATCTCTTCCCCTCCAGCTGAAGGCTTGCGTGCCCTGGCCTCTG
CCAACTGTAAGCTACCTTGGGTACTCCCGAGGGTCAGCTCCCCACTGGTAGGTTTTTCCTTCTG
TCTTTCTGTCTGCTTGGGGTCTCTGTCTTCCCCCACTCACTATTCCCTCACAAATCGGAAGGAA
ACAGTCCAACGGGTCCTGCTGTGCATGCACCTGGCCCCAGGAAAGCCACCTCAGAGCCTTTACT
GCTTCACTAATGCCTCTGGCTTCCTACAGAGCCTTTGAGGTCAGCTGACTGTTGAGTCCATGAA
TGACCGAGGAGTCCAGGCTGCAGGCTCTGTCCTCCTAGGCCTCCCCCTGCTCATGATCCAATAC
AGCGCTTCCGAGAGCAATAAAAACTACACTAGGAATGTGGGAGTGGGCTTTTTGGTTTTTTGGG
GTGGGGTCAGATCTTGCTTTTTCATCTGCTTCAGAAAGAAAAAGGGGGAGGAGAGCCCCTTCGA
TTTTTCTATTAAATTAATAAATCTCAGAATAATGCTTTTCTCTTTTCCTTCACACCCTACTACT
GATAGGCATGACAGATGTCATGGGCAGATTCAGACAGAAGGGTCTGCGGAAGCAGTGGGCTTGC
TAGCCTTCAGGGAGCCCATGCTGGAAGCAGCAGGCTCAGGAGCCAGAGGCATTCTGGAACCGGA
GTGGTTGGTGGCCTCAGGAGGGAGGGCCTGGACTGCTAGGCTGGCTCTGCTTCTGGTTCTCCAG
CAGAGGGGCCCCCACAAGACTGGGATATGGTCTCCTCCCTACTCAGGGTCAAGAGTCAGATACA
CGAGGGCTCCCACCATCTCCCCGAGAGACCCTTCCGCTGTCCAGGCGGTCTCCCACCCCTGGTC
CCCAGCCACACCCACGTACCTCACGCAGGCCTCGCTGAAGCTATGCTGAACTTCAGCAGTGGCT
GCCACTCTCCTGCCTGCTTGTGGCATTTCATGGCACCCATATTGAGCATCTAGGCTCTCTCTGA
GGGCTTTGTGTTAGCATCCTGATGGGTGGCCATCCTGGAAGAAGCAGGAGCATCATACTAGGAA
GGCTGAATGGTCAGAATGTGGGTAATTAGAGATCAGGGACACTCTTCTTTTGACAAGACCTGTT
TAACCCAAAGGGTAAGCAAACAGAACAAACGCTTACTGTTTGTGGATCTTTGGTGACTGCATCT
GGGAGGCACATCTGAGATGCTGTAAGCCCAGTCCTGGGGGAGGGGAGACAAGGGGGCGGAACCC
GTCTGATTACAGAGATGAGCTTTGAATTCTCAGGCTGCCTGTTAACAAACTGTAACAATGTAAC
AAGGCTTTCTTGTAGGAACAATGCAGGTGTCTTCACAGATGCCTTGGCTGCCCCTCCCAGCCCC
TTTTGTGCACCTTGCCCTGAGAATCTTTTCTGCCTCTGATGCAGTCCAGCCTTCATACTATCCC
AGGAAAAGTCAGGGTTAGCCCCGATTTGTGTCAGGTTCCGGATGAAGAATTAAGTGACTCTTCC
TGCATGTTGCCCTGTCTCAGCCTGAGGCTTTATAGGACGAGCCAAAAGTAACCTTTCCAGCCCT
GATGACCTGCACCTCAACTGTTTGTCCCACACATAGACCCGACCACTAGCTAGATGCATGCGAC
GCTTAACGCTAGCCATTTGGTGTGGCTTCTAGCCCTCTGCAGTGTCATGAAGCTCAGGGTTAGA
ATGGCGCACCTGTGATGCCTGCTGCCTTCTTTCTAGAAACATCTCTGGCCCATAGGCCAGCCCC
AAACCAAAGGCACCTGGGCCTGGGTGAGGGCACCCCTGACCTGCCTCAGGCCTTGTCCCAGAGT
CTTGCCATGGGGCTGTCAGGAGGGTGCTGACATTCATGCCCTAGATTCCCTGCATACAGGGGCC
AGGATTTTAAAATGCCAGTTCAGGCTTTGGGCGATCTACTTGGCTGACAGGGTGGACACATGAA
TCGAATTTATTACAGGCTTTTGAAATCGGTTAATCCAGGGGAAAGGTGGGATTCTCACAGACCA
CTCCAGAAATCAACCCAACGAGAGCACTTTGCAGAGCCATCAGAGATGGTGGCCTCCTCTCTTT
ACAGACAGCGACCTGTGAAACTGTGAACTTTGTACTGACAGGTCACCTGGAGTTTTCTTTTTTC
TCCCGTAGCTTTTTGGTTTCTTTCTGTTGCAAAAGTGTTTGGACAGAAGCAGAACTGTGAACGA
GATCCTGAAATGCACTAAATTGTATTCTATTAAACTGGAGTTACTTGATTCAATGAAA

hide sequence

RefSeq Acc Id:

XM_039098552 ⟹ XP_038954480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	10,386,518 - 10,414,407 (+)	NCBI
mRatBN7.2	20	10,386,844 - 10,414,741 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099848	(Get FASTA)	NCBI Sequence Viewer
	XP_006256305	(Get FASTA)	NCBI Sequence Viewer
	XP_038954480	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58874	(Get FASTA)	NCBI Sequence Viewer
	EDL97047	(Get FASTA)	NCBI Sequence Viewer
	EDL97048	(Get FASTA)	NCBI Sequence Viewer
	EDL97049	(Get FASTA)	NCBI Sequence Viewer
	EDL97050	(Get FASTA)	NCBI Sequence Viewer
	EDL97051	(Get FASTA)	NCBI Sequence Viewer
	EDL97052	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001602
	ENSRNOP00000001602.5

RefSeq Acc Id:

NP_001099848 ⟸ NM_001106378

- UniProtKB:

G3V648 (UniProtKB/TrEMBL), A6JK33 (UniProtKB/TrEMBL), B0BNL8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLLAYLKTQFVVHLLIGFVFVVSGLIINFTQLCTLALWPISKNLYRRINCRLAYSLWSQLVML
LEWWSCTECTLFTDQATVNHFGKEHVVVILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLY
VPLIGWTWYFLEIVFCKRKWEEDRDTVIEGLRRLANYPEYMWFLLYCEGTRFTETKHRVSMEVA
ASKGLPPLKYHLLPRTKGFTTAVQCLRGTVAAIYDVTLNFRGNKNPSLLGILYGKKYEADMCVR
RFPLEDIPADETGAAQWLHKLYQEKDALQEMYKQSGVFPGEQIKPARRPWTLLNFLCWATFLLS
PLFSFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE

hide sequence

RefSeq Acc Id:	XP_006256305 ⟸ XM_006256243
- Peptide Label:	isoform X1
- UniProtKB:	G3V648 (UniProtKB/TrEMBL), A6JK33 (UniProtKB/TrEMBL), B0BNL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLLAYLKTQFVVHLLIGFVFVVSGLIINFTQLCTLALWPISKNLYRRINCRLAYSLWSQLVML LEWWSCTECTLFTDQATVNHFGKEHVVVILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLY VPLIGWTWYFLEIVFCKRKWEEDRDTVIEGLRRLANYPEYMWFLLYCEGTRFTETKHRVSMEVA ASKGLPPLKYHLLPRTKGFTTAVQCLRGTVAAIYDVTLNFRGNKNPSLLGILYGKKYEADMCVR RFPLEDIPADETGAAQWLHKLYQEKDALQEMYKQSGVFPGEQIKPARRPWTLLNFLCWATFLLS PLFSFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE hide sequence

Ensembl Acc Id:

ENSRNOP00000001602 ⟸ ENSRNOT00000001602

RefSeq Acc Id:	XP_038954480 ⟸ XM_039098552
- Peptide Label:	isoform X1
- UniProtKB:	G3V648 (UniProtKB/TrEMBL), A6JK33 (UniProtKB/TrEMBL), B0BNL8 (UniProtKB/TrEMBL)

Protein Domains

Phospholipid/glycerol acyltransferase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V648-F1-model_v2	AlphaFold	G3V648	1-376	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305787	AgrOrtholog
BioCyc Gene	G2FUF-4280	BioCyc
BioCyc Pathway	PWY-5667 [CDP-diacylglycerol biosynthesis I]	BioCyc
	PWY-7411 [phosphatidate biosynthesis (yeast)]	BioCyc
	PWY-7417 [phospholipid remodeling (phosphatidate, yeast)]	BioCyc
	PWY-7782 [plasmalogen biosynthesis]	BioCyc
	PWY-8053 [anandamide biosynthesis II]	BioCyc
	TRIGLSYN-PWY [diacylglycerol and triacylglycerol biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-5667	BioCyc
	PWY-7411	BioCyc
	PWY-7417	BioCyc
	PWY-7782	BioCyc
	PWY-8053	BioCyc
	TRIGLSYN-PWY	BioCyc
Ensembl Genes	ENSRNOG00000001205	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001602	ENTREZGENE
	ENSRNOT00000001602.7	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7933427	IMAGE-MGC_LOAD
InterPro	Acyltransf_C	UniProtKB/TrEMBL
	Acyltransferase	UniProtKB/TrEMBL
KEGG Report	rno:294324	UniProtKB/TrEMBL
MGC_CLONE	MGC:188537	IMAGE-MGC_LOAD
NCBI Gene	294324	ENTREZGENE
PANTHER	1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GAMMA	UniProtKB/TrEMBL
	1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED	UniProtKB/TrEMBL
Pfam	Acyltransf_C	UniProtKB/TrEMBL
	Acyltransferase	UniProtKB/TrEMBL
PhenoGen	Agpat3	PhenoGen
RatGTEx	ENSRNOG00000001205	RatGTEx
SMART	PlsC	UniProtKB/TrEMBL
Superfamily-SCOP	Glycerol-3-phosphate (1)-acyltransferase	UniProtKB/TrEMBL
UniProt	A6JK33	ENTREZGENE, UniProtKB/TrEMBL
	B0BNL8	ENTREZGENE, UniProtKB/TrEMBL
	G3V648	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Agpat3	1-acylglycerol-3-phosphate O-acyltransferase 3	Agpat3_predicted	1-acylglycerol-3-phosphate O-acyltransferase 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Agpat3_predicted	1-acylglycerol-3-phosphate O-acyltransferase 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways