Lratd1 (LRAT domain containing 1) - Rat Genome Database

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Gene: Lratd1 (LRAT domain containing 1) Rattus norvegicus
Analyze
Symbol: Lratd1
Name: LRAT domain containing 1
RGD ID: 1305779
Description: Predicted to be involved in cell morphogenesis and cell motility. Orthologous to human LRATD1 (LRAT domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Fam84a; family with sequence similarity 84, member A; LOC313969; RGD1305779; similar to NSE1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8642,646,515 - 42,650,988 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl642,640,190 - 42,651,204 (-)EnsemblGRCr8
mRatBN7.2636,916,969 - 36,922,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl636,913,469 - 36,922,319 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx637,229,678 - 37,234,169 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0637,544,351 - 37,548,842 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0636,994,065 - 36,998,553 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0639,358,285 - 39,363,458 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl639,358,985 - 39,363,458 (-)Ensemblrn6Rnor6.0
Rnor_5.0648,123,155 - 48,128,472 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4637,782,015 - 37,786,488 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera636,259,766 - 36,264,239 (-)NCBICelera
RGSC_v3.1637,785,856 - 37,789,250 (-)NCBI
Cytogenetic Map6q15NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cefaloridine  (EXP)
choline  (ISO)
chromium(6+)  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
cyanocob(III)alamin  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
glycine betaine  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
indometacin  (ISO)
L-methionine  (ISO)
methamphetamine  (EXP)
methylmercury chloride  (ISO)
ochratoxin A  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propanal  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-nitrosoglutathione  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell morphogenesis  (IBA,IEA,ISO)
cell motility  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16820875  


Genomics

Comparative Map Data
Lratd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8642,646,515 - 42,650,988 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl642,640,190 - 42,651,204 (-)EnsemblGRCr8
mRatBN7.2636,916,969 - 36,922,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl636,913,469 - 36,922,319 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx637,229,678 - 37,234,169 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0637,544,351 - 37,548,842 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0636,994,065 - 36,998,553 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0639,358,285 - 39,363,458 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl639,358,985 - 39,363,458 (-)Ensemblrn6Rnor6.0
Rnor_5.0648,123,155 - 48,128,472 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4637,782,015 - 37,786,488 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera636,259,766 - 36,264,239 (-)NCBICelera
RGSC_v3.1637,785,856 - 37,789,250 (-)NCBI
Cytogenetic Map6q15NCBI
LRATD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38214,632,717 - 14,651,916 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl214,632,700 - 14,650,814 (+)Ensemblhg38GRCh38
GRCh37214,772,841 - 14,792,040 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36214,690,307 - 14,693,898 (+)NCBIBuild 36Build 36hg18NCBI36
Celera214,690,800 - 14,698,160 (+)NCBICelera
Cytogenetic Map2p24.3NCBI
HuRef214,623,272 - 14,630,632 (+)NCBIHuRef
CHM1_1214,702,276 - 14,709,636 (+)NCBICHM1_1
T2T-CHM13v2.0214,663,504 - 14,682,703 (+)NCBIT2T-CHM13v2.0
Lratd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391214,197,599 - 14,202,039 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1214,196,831 - 14,202,055 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381214,147,598 - 14,152,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1214,146,830 - 14,152,054 (-)Ensemblmm10GRCm38
MGSCv371214,154,404 - 14,158,844 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361214,173,138 - 14,177,578 (-)NCBIMGSCv36mm8
Celera1214,497,016 - 14,501,453 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map126.93NCBI
Lratd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554878,452,621 - 8,454,585 (+)Ensembl
ChiLan1.0NW_0049554878,452,413 - 8,454,585 (+)NCBIChiLan1.0ChiLan1.0
LOC100974506
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212111,875,720 - 111,877,735 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A111,879,692 - 111,881,707 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A14,632,469 - 14,634,528 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A14,765,550 - 14,770,290 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A14,767,049 - 14,767,927 (+)EnsemblpanPan2panpan1.1
LRATD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11710,658,511 - 10,660,730 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1710,659,777 - 10,660,685 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1710,601,907 - 10,610,106 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01710,781,633 - 10,789,835 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1710,782,798 - 10,783,706 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11710,646,902 - 10,655,099 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01710,657,481 - 10,665,043 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01710,679,556 - 10,687,756 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lratd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629255,149,649 - 55,150,748 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493735985,928 - 86,755 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRATD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3122,716,040 - 122,731,791 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13122,716,029 - 122,720,957 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23143,905,448 - 143,910,293 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRATD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11493,016,709 - 93,022,670 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1493,020,404 - 93,021,282 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604519,244,941 - 19,251,510 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lratd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248651,721,911 - 1,724,115 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248651,719,711 - 1,724,056 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Lratd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1734,095,320 - 34,099,823 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lratd1
37 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:380
Count of miRNA genes:212
Interacting mature miRNAs:277
Transcripts:ENSRNOT00000065531
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat

Markers in Region
RH142890  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2636,916,970 - 36,917,070 (+)MAPPERmRatBN7.2
Rnor_6.0639,358,287 - 39,358,386NCBIRnor6.0
Rnor_5.0648,123,157 - 48,123,256UniSTSRnor5.0
RGSC_v3.4637,781,317 - 37,781,416UniSTSRGSC3.4
Celera636,259,068 - 36,259,167UniSTS
RH 3.4 Map6147.5UniSTS
Cytogenetic Map6q15UniSTS
RH141825  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2636,917,961 - 36,918,144 (+)MAPPERmRatBN7.2
Rnor_6.0639,359,278 - 39,359,460NCBIRnor6.0
Rnor_5.0648,124,148 - 48,124,330UniSTSRnor5.0
RGSC_v3.4637,782,308 - 37,782,490UniSTSRGSC3.4
Celera636,260,059 - 36,260,241UniSTS
RH 3.4 Map6144.2UniSTS
Cytogenetic Map6q15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 64 157 80 79 48 26 48 6 271 118 7 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000065531   ⟹   ENSRNOP00000060795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl642,646,515 - 42,650,988 (-)Ensembl
mRatBN7.2 Ensembl636,917,669 - 36,922,143 (-)Ensembl
Rnor_6.0 Ensembl639,358,985 - 39,363,458 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088687   ⟹   ENSRNOP00000069863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl642,645,324 - 42,651,204 (-)Ensembl
mRatBN7.2 Ensembl636,913,469 - 36,922,319 (-)Ensembl
Rnor_6.0 Ensembl639,359,118 - 39,363,367 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153195   ⟹   ENSRNOP00000112452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl642,640,190 - 42,651,174 (-)Ensembl
RefSeq Acc Id: NM_001127299   ⟹   NP_001120771
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8642,646,515 - 42,650,988 (-)NCBI
mRatBN7.2636,917,669 - 36,922,143 (-)NCBI
Rnor_6.0639,358,985 - 39,363,458 (-)NCBI
Rnor_5.0648,123,155 - 48,128,472 (-)NCBI
RGSC_v3.4637,782,015 - 37,786,488 (-)RGD
Celera636,259,766 - 36,264,239 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001120771 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66716 (Get FASTA)   NCBI Sequence Viewer  
  EDM03123 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060795
  ENSRNOP00000060795.1
  ENSRNOP00000069863.1
  ENSRNOP00000112452.1
RefSeq Acc Id: NP_001120771   ⟸   NM_001127299
- UniProtKB: G3V9V1 (UniProtKB/TrEMBL),   A6HAR8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060795   ⟸   ENSRNOT00000065531
Ensembl Acc Id: ENSRNOP00000069863   ⟸   ENSRNOT00000088687
Ensembl Acc Id: ENSRNOP00000112452   ⟸   ENSRNOT00000153195
Protein Domains
LRAT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9V1-F1-model_v2 AlphaFold G3V9V1 1-320 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694505
Promoter ID:EPDNEW_R5026
Type:single initiation site
Name:Fam84a_1
Description:family with sequence similarity 84, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0639,363,374 - 39,363,434EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305779 AgrOrtholog
BioCyc Gene G2FUF-38111 BioCyc
Ensembl Genes ENSRNOG00000004084 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065531 ENTREZGENE
  ENSRNOT00000065531.3 UniProtKB/TrEMBL
  ENSRNOT00000088687.3 UniProtKB/TrEMBL
  ENSRNOT00000153195.1 UniProtKB/TrEMBL
Gene3D-CATH endopeptidase domain like (from Nostoc punctiforme) UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7930888 IMAGE-MGC_LOAD
InterPro LRAT_dom UniProtKB/TrEMBL
  LRATD1_LRATD2 UniProtKB/TrEMBL
KEGG Report rno:313969 UniProtKB/TrEMBL
MGC_CLONE MGC:188417 IMAGE-MGC_LOAD
NCBI Gene 313969 ENTREZGENE
PANTHER PROTEIN LRATD1 UniProtKB/TrEMBL
  PTHR46341 UniProtKB/TrEMBL
Pfam LRAT UniProtKB/TrEMBL
PhenoGen Lratd1 PhenoGen
PROSITE LRAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004084 RatGTEx
UniProt A6HAR8 ENTREZGENE, UniProtKB/TrEMBL
  B2RYB4_RAT UniProtKB/TrEMBL
  G3V9V1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Lratd1  LRAT domain containing 1  Fam84a  family with sequence similarity 84, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Fam84a  family with sequence similarity 84, member A  RGD1305779_predicted  similar to NSE1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1305779_predicted  similar to NSE1 (predicted)  LOC313969_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC313969_predicted  similar to NSE1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL