Tmem38b (transmembrane protein 38B) - Rat Genome Database

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Gene: Tmem38b (transmembrane protein 38B) Rattus norvegicus
Analyze
Symbol: Tmem38b
Name: transmembrane protein 38B
RGD ID: 1305703
Description: Predicted to enable potassium channel activity. Predicted to be involved in regulation of release of sequestered calcium ion into cytosol. Predicted to act upstream of or within several processes, including cellular response to caffeine; lung development; and regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 14. Orthologous to human TMEM38B (transmembrane protein 38B); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362521; RGD1305703; similar to hypothetical protein D4Ertd89e; TRIC-B; TRICB; trimeric intracellular cation channel type B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8573,255,662 - 73,291,383 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl573,255,632 - 73,292,384 (+)EnsemblGRCr8
mRatBN7.2568,460,304 - 68,496,026 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl568,460,304 - 68,496,025 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx570,354,532 - 70,390,173 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0572,171,549 - 72,207,203 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0572,143,355 - 72,178,996 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0570,639,156 - 70,675,055 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl570,639,156 - 70,675,054 (+)Ensemblrn6Rnor6.0
Rnor_5.0574,816,786 - 74,852,685 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4571,275,819 - 71,311,539 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera567,353,639 - 67,389,331 (+)NCBICelera
RGSC_v3.1571,280,931 - 71,316,651 (+)NCBI
Cytogenetic Map5q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
folic acid  (ISO)
genistein  (ISO)
GSK-J4  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
leflunomide  (EXP)
levofloxacin  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:17611541   PMID:19515693   PMID:21630459   PMID:27188440  


Genomics

Comparative Map Data
Tmem38b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8573,255,662 - 73,291,383 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl573,255,632 - 73,292,384 (+)EnsemblGRCr8
mRatBN7.2568,460,304 - 68,496,026 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl568,460,304 - 68,496,025 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx570,354,532 - 70,390,173 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0572,171,549 - 72,207,203 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0572,143,355 - 72,178,996 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0570,639,156 - 70,675,055 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl570,639,156 - 70,675,054 (+)Ensemblrn6Rnor6.0
Rnor_5.0574,816,786 - 74,852,685 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4571,275,819 - 71,311,539 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera567,353,639 - 67,389,331 (+)NCBICelera
RGSC_v3.1571,280,931 - 71,316,651 (+)NCBI
Cytogenetic Map5q24NCBI
TMEM38B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389105,694,541 - 105,776,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9105,694,519 - 105,776,629 (+)Ensemblhg38GRCh38
GRCh379108,456,822 - 108,538,910 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369107,496,646 - 107,577,265 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349105,536,379 - 105,616,999NCBI
Celera978,961,966 - 79,042,583 (+)NCBICelera
Cytogenetic Map9q31.2NCBI
HuRef978,058,333 - 78,140,432 (+)NCBIHuRef
CHM1_19108,603,836 - 108,685,928 (+)NCBICHM1_1
T2T-CHM13v2.09117,869,221 - 117,951,308 (+)NCBIT2T-CHM13v2.0
Tmem38b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,825,988 - 53,862,019 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl453,826,045 - 53,862,019 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38453,825,988 - 53,862,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,826,045 - 53,862,019 (+)Ensemblmm10GRCm38
MGSCv37453,838,917 - 53,874,890 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36453,847,162 - 53,881,691 (+)NCBIMGSCv36mm8
Celera453,777,127 - 53,813,113 (+)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.76NCBI
Tmem38b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541920,812,702 - 20,878,599 (-)Ensembl
ChiLan1.0NW_00495541920,811,931 - 20,844,420 (-)NCBIChiLan1.0ChiLan1.0
TMEM38B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21133,620,435 - 33,704,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1933,622,803 - 33,707,073 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0976,854,177 - 76,938,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19104,980,839 - 105,128,988 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,980,935 - 105,128,988 (+)EnsemblpanPan2panpan1.1
TMEM38B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11161,511,756 - 61,561,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1161,511,750 - 61,560,556 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1159,972,149 - 60,025,713 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01162,647,940 - 62,698,349 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1162,648,021 - 62,701,687 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11161,173,131 - 61,226,785 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01161,185,173 - 61,235,604 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01161,885,749 - 61,937,757 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem38b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947176,713,120 - 176,764,789 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365596,500,190 - 6,553,513 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365596,501,890 - 6,553,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM38B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,973,436 - 247,027,527 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11246,973,447 - 247,024,019 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,767,826 - 276,818,432 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM38B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11233,759,311 - 33,840,357 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1233,759,157 - 33,840,009 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660358,801,223 - 8,880,353 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem38b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247585,662,661 - 5,719,865 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247585,664,287 - 5,720,061 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem38b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1197,587,575 - 97,622,963 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem38b
224 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:692
Count of miRNA genes:280
Interacting mature miRNAs:345
Transcripts:ENSRNOT00000034570
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
RH126257  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2568,494,458 - 68,494,659 (+)MAPPERmRatBN7.2
Rnor_6.0570,673,488 - 70,673,688NCBIRnor6.0
Rnor_5.0574,851,118 - 74,851,318UniSTSRnor5.0
RGSC_v3.4571,309,972 - 71,310,172UniSTSRGSC3.4
Celera567,387,764 - 67,387,964UniSTS
Cytogenetic Map5q24UniSTS
BE116176  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2568,493,257 - 68,493,422 (+)MAPPERmRatBN7.2
Rnor_6.0570,672,287 - 70,672,451NCBIRnor6.0
Rnor_5.0574,849,917 - 74,850,081UniSTSRnor5.0
RGSC_v3.4571,308,771 - 71,308,935UniSTSRGSC3.4
Celera567,386,563 - 67,386,727UniSTS
RH 3.4 Map5451.2UniSTS
Cytogenetic Map5q24UniSTS
RH137236  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2568,494,229 - 68,494,441 (+)MAPPERmRatBN7.2
Rnor_6.0570,673,259 - 70,673,470NCBIRnor6.0
Rnor_5.0574,850,889 - 74,851,100UniSTSRnor5.0
RGSC_v3.4571,309,743 - 71,309,954UniSTSRGSC3.4
Celera567,387,535 - 67,387,746UniSTS
RH 3.4 Map5466.9UniSTS
Cytogenetic Map5q24UniSTS
AI172189  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2568,495,599 - 68,495,779 (+)MAPPERmRatBN7.2
Rnor_6.0570,674,629 - 70,674,808NCBIRnor6.0
Rnor_5.0574,852,259 - 74,852,438UniSTSRnor5.0
RGSC_v3.4571,311,113 - 71,311,292UniSTSRGSC3.4
Celera567,388,905 - 67,389,084UniSTS
RH 3.4 Map5467.8UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000034570   ⟹   ENSRNOP00000033050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl573,255,632 - 73,292,384 (+)Ensembl
mRatBN7.2 Ensembl568,460,304 - 68,496,025 (+)Ensembl
Rnor_6.0 Ensembl570,639,156 - 70,675,054 (+)Ensembl
RefSeq Acc Id: NM_001014191   ⟹   NP_001014213
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8573,255,662 - 73,291,383 (+)NCBI
mRatBN7.2568,460,304 - 68,496,026 (+)NCBI
Rnor_6.0570,639,156 - 70,675,055 (+)NCBI
Rnor_5.0574,816,786 - 74,852,685 (+)NCBI
RGSC_v3.4571,275,819 - 71,311,539 (+)RGD
Celera567,353,639 - 67,389,331 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001014213 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79336 (Get FASTA)   NCBI Sequence Viewer  
  EDL91706 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000033050
  ENSRNOP00000033050.3
GenBank Protein Q68FV1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001014213   ⟸   NM_001014191
- UniProtKB: Q68FV1 (UniProtKB/Swiss-Prot),   A6KDP9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033050   ⟸   ENSRNOT00000034570

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FV1-F1-model_v2 AlphaFold Q68FV1 1-291 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693747
Promoter ID:EPDNEW_R4272
Type:initiation region
Name:Tmem38b_1
Description:transmembrane protein 38B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0570,639,108 - 70,639,168EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305703 AgrOrtholog
BioCyc Gene G2FUF-41263 BioCyc
Ensembl Genes ENSRNOG00000028063 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000034570 ENTREZGENE
  ENSRNOT00000034570.4 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7106021 IMAGE-MGC_LOAD
InterPro TRIC_channel UniProtKB/Swiss-Prot
KEGG Report rno:362521 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94772 IMAGE-MGC_LOAD
NCBI Gene 362521 ENTREZGENE
PANTHER PTHR12454 UniProtKB/Swiss-Prot
  TRIMERIC INTRACELLULAR CATION CHANNEL TYPE B UniProtKB/Swiss-Prot
Pfam TRIC UniProtKB/Swiss-Prot
PhenoGen Tmem38b PhenoGen
RatGTEx ENSRNOG00000028063 RatGTEx
UniProt A6KDP9 ENTREZGENE, UniProtKB/TrEMBL
  Q68FV1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Tmem38b  transmembrane protein 38B  RGD1305703  similar to hypothetical protein D4Ertd89e  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305703  similar to hypothetical protein D4Ertd89e  RGD1305703_predicted  similar to hypothetical protein D4Ertd89e (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305703_predicted  similar to hypothetical protein D4Ertd89e (predicted)  LOC362521_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362521_predicted  similar to hypothetical protein D4Ertd89e (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL