Advanced Search (OLGA)

Gene: Usp20 (ubiquitin specific peptidase 20) Rattus norvegicus

Analyze

Symbol:

Usp20

Name:

ubiquitin specific peptidase 20

RGD ID:

1305621

Description:

Predicted to enable G protein-coupled receptor binding activity; cysteine-type deubiquitinase activity; and cysteine-type endopeptidase activity. Predicted to be involved in nervous system development; protein deubiquitination; and regulation of G protein-coupled receptor signaling pathway. Predicted to act upstream of or within several processes, including antiviral innate immune response; canonical NF-kappaB signal transduction; and negative regulation of canonical NF-kappaB signal transduction. Predicted to be located in centrosome. Orthologous to human USP20 (ubiquitin specific peptidase 20); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC311856; ubiquitin carboxyl-terminal hydrolase 20; ubiquitin specific protease 20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP20 (ubiquitin specific peptidase 20)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Usp20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Usp20 (ubiquitin specific peptidase 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	USP20 (ubiquitin specific peptidase 20)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp20 (ubiquitin specific peptidase 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp20 (ubiquitin specific peptidase 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBP10	Alliance	DIOPT (Ensembl Compara\|OrthoInspector)
Caenorhabditis elegans (roundworm):	usp-33	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Usp20-33	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Usp20-33	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,670,613 - 34,704,156 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	34,670,685 - 34,704,156 (+)	Ensembl				GRCr8
mRatBN7.2	3	14,272,737 - 14,306,409 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	14,272,908 - 14,306,409 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	17,345,478 - 17,378,966 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,930,477 - 25,963,967 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	24,177,762 - 24,211,223 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	9,822,586 - 9,856,057 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,822,580 - 9,856,057 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	15,181,259 - 15,214,732 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	10,048,393 - 10,080,966 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	9,031,454 - 9,063,927 (+)	NCBI		Celera
RGSC_v3.1	3	9,943,606 - 9,977,231 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

coumarin (ISO)

Dibutyl phosphate (ISO)

ethanol (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

genistein (ISO)

gentamycin (EXP)

hydrogen cyanide (ISO)

leflunomide (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methidathion (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium cyanide (ISO)

rac-lactic acid (ISO)

raloxifene (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antiviral innate immune response (IEA,ISO)

endocytosis (IEA)

negative regulation of canonical NF-kappaB signal transduction (IEA,ISO)

nervous system development (IBA)

positive regulation of autophagy (IEA,ISO)

protein deubiquitination (IEA,ISO)

protein K48-linked deubiquitination (IEA,ISO)

protein K63-linked deubiquitination (IEA,ISO)

proteolysis (IEA)

regulation of G protein-coupled receptor signaling pathway (IBA,IEA,ISO)

Cellular Component

centrosome (IEA,ISO)

endoplasmic reticulum (IEA)

perinuclear region of cytoplasm (IEA)

Molecular Function

cysteine-type deubiquitinase activity (IEA,ISO)

cysteine-type endopeptidase activity (IEA,ISO)

cysteine-type peptidase activity (IEA)

G protein-coupled receptor binding (IEA,ISO)

hydrolase activity (IEA)

metal ion binding (IEA)

peptidase activity (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19424180	PMID:23486064	PMID:27156111

Genomics

Comparative Map Data

Usp20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,670,613 - 34,704,156 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	34,670,685 - 34,704,156 (+)	Ensembl				GRCr8
mRatBN7.2	3	14,272,737 - 14,306,409 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	14,272,908 - 14,306,409 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	17,345,478 - 17,378,966 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,930,477 - 25,963,967 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	24,177,762 - 24,211,223 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	9,822,586 - 9,856,057 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,822,580 - 9,856,057 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	15,181,259 - 15,214,732 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	10,048,393 - 10,080,966 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	9,031,454 - 9,063,927 (+)	NCBI		Celera
RGSC_v3.1	3	9,943,606 - 9,977,231 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

USP20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	129,835,458 - 129,881,828 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	129,834,698 - 129,881,842 (+)	Ensembl			hg38	GRCh38
GRCh37	9	132,597,737 - 132,644,107 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	131,637,570 - 131,683,928 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	129,677,302 - 129,723,661	NCBI
Celera	9	103,248,726 - 103,295,216 (+)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	102,196,523 - 102,243,074 (+)	NCBI		HuRef
CHM1_1	9	132,746,720 - 132,793,117 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	142,040,029 - 142,086,556 (+)	NCBI		T2T-CHM13v2.0

Usp20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	30,872,291 - 30,912,667 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	30,872,291 - 30,913,598 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	30,982,279 - 31,022,655 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	30,982,279 - 31,023,586 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	30,837,799 - 30,878,175 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	30,818,051 - 30,845,595 (+)	NCBI		MGSCv36	mm8
Celera	2	30,688,074 - 30,728,467 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	21.77	NCBI

Usp20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	42,809 - 70,906 (+)	Ensembl
ChiLan1.0	NW_004955513	43,601 - 70,714 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	9,467,330 - 9,513,818 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	9,469,674 - 9,516,162 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	100,962,851 - 101,009,326 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	129,620,132 - 129,666,713 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	129,621,642 - 129,666,713 (+)	Ensembl			panPan2	panpan1.1

USP20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	53,966,180 - 54,009,312 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	53,966,183 - 54,009,317 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	53,163,042 - 53,206,314 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	54,863,745 - 54,906,951 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	54,863,743 - 54,906,925 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	53,641,038 - 53,684,206 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	53,963,134 - 54,006,310 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	54,056,181 - 54,099,449 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Usp20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	197,261,923 - 197,300,812 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	17,044,073 - 17,069,104 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	17,030,397 - 17,069,165 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	269,995,520 - 270,086,780 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	269,995,532 - 270,037,499 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	303,892,891 - 303,935,534 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	8,256,835 - 8,301,063 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	8,258,365 - 8,301,020 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	7,139,293 - 7,185,490 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	5,568,761 - 5,594,510 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	5,568,763 - 5,594,519 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Usp20
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	4,602,692 - 4,629,206 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Usp20
383 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	264
Count of miRNA genes:	182
Interacting mature miRNAs:	210
Transcripts:	ENSRNOT00000010786
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH135207

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	34,701,368 - 34,702,019 (+)	Marker Load Pipeline
mRatBN7.2	3	14,303,621 - 14,304,272 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,853,270 - 9,853,920	NCBI	Rnor6.0
Rnor_5.0	3	15,211,945 - 15,212,595	UniSTS	Rnor5.0
RGSC_v3.4	3	10,079,079 - 10,079,729	UniSTS	RGSC3.4
Celera	3	9,061,225 - 9,061,875	UniSTS
RH 3.4 Map	3	47.3	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
18	12	79	201	91	90	59	138	59	6	437	253	14	185	99	104	31	33	33

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MW396046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010786 ⟹ ENSRNOP00000010786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,670,685 - 34,704,156 (+)	Ensembl
mRatBN7.2 Ensembl	3	14,272,938 - 14,306,409 (+)	Ensembl
Rnor_6.0 Ensembl	3	9,822,580 - 9,856,057 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	9,852,901 - 9,853,527 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	9,835,593 - 9,849,949 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	9,852,865 - 9,853,988 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093718 ⟹ ENSRNOP00000076274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,272,908 - 14,300,293 (+)	Ensembl
Rnor_6.0 Ensembl	3	9,822,648 - 9,839,247 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114450 ⟹ ENSRNOP00000091833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,670,685 - 34,704,156 (+)	Ensembl
mRatBN7.2 Ensembl	3	14,279,744 - 14,304,487 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114728 ⟹ ENSRNOP00000091528

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,670,685 - 34,704,156 (+)	Ensembl
mRatBN7.2 Ensembl	3	14,272,938 - 14,306,409 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116274 ⟹ ENSRNOP00000097493

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,670,722 - 34,703,338 (+)	Ensembl
mRatBN7.2 Ensembl	3	14,272,974 - 14,304,515 (+)	Ensembl

RefSeq Acc Id:

NM_001107827 ⟹ NP_001101297

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,670,685 - 34,704,156 (+)	NCBI
mRatBN7.2	3	14,272,938 - 14,306,409 (+)	NCBI
Rnor_6.0	3	9,822,586 - 9,856,057 (+)	NCBI
Rnor_5.0	3	15,181,259 - 15,214,732 (+)	NCBI
RGSC_v3.4	3	10,048,393 - 10,080,966 (+)	RGD
Celera	3	9,031,454 - 9,063,927 (+)	NCBI

Sequence:

show sequence

CACAAGACTATGCGCATCGCCGCGGTGGGCGCGCTTGACTGACAGGCGGCGCGGTTGCGACGGC
AGGTGCCTTGTCGGAGGCTTTACTGCCGAGCCCCTTGTCAGCCGGTCACTGTCCACAGAAAATG
TACACATCGGCCTCCTCTGTGTGCTGCTGAGTCAGGGGAGGCTGGCCAGAATGGGGGACGCCAG
AGACATCTGCCCTCACCTGGACTCCATAGGGGAGGTGACCAAAGAGGACTTGCTGCTTAAATCT
AAGGGGACCTGCCAGTCCTGTGGTGTTGCTGGACCTAACCTATGGGCTTGCCTCCAGGTCACCT
GCCCCTATGTTGGCTGTGGAGAGTCTTTTGCTGACCATAGCAGCATTCATGCACAGGTGAAAAG
GCACAACCTGACTGTGAACCTGACTACGTTACGGGTGTGGTGCTACGCCTGTGAGCGGGAAGTC
TTTCTGGAGCAGCGCCTGGCAGTCCACCTGCCCAGCTCCTCAGCCAGGCTCTCAGAGCAGGACT
CCCCACCACCCTGCCACCCTCTGAAAGCTGTCCCTATTGCCGTGGCTGATGAGGGAGAGTCTGA
GTCTGAGGACGATGACCTGAAGCCTCGAGGCCTCACAGGCATGAAGAACCTGGGGAACTCCTGT
TACATGAATGCTGCCCTGCAGGCCTTGTCCAATTGCCCCCCACTCACCCAGTTCTTCCTGGAGT
GTGGTGGCCTGGTGCGAACAGACAAGAAGCCAGCCTTGTGCAAAAGTTACCAGAAGTTGATCTC
TGAGGTCTGGCACAAGAAACGGCCAAGCTATGTGGTCCCCACCAGCCTATCCCATGGGATCAAG
TTGGTCAACCCGATGTTCCGAGGCTATGCCCAGCAGGACACCCAGGAGTTCCTACGCTGCCTGA
TGGACCAGCTTCACGAGGAGCTCAAGGAGCCCATGGTAGCTGCTGTGGCAGCTCTCACTGATGC
TCGGGACTCAGATTCCAGTGACACAGATGAGAGGCGTGATGGCGACCGGAGCCCTTCAGAGGAC
GAGTTTCTGTCCTGTGACTCGAGCAGTGACAGGGGTGAGGGTGATGGGCAGGGCCGTGGTGGAG
GCAGCTCAAAGGCTGAGATGGAGCTGCTGATCTCAGACGAGGCGGGCCGAGCCATCTCTGAGAA
AGAGCGAATGAAGGACCGCAAGTTCTCCTGGGGCCAGCAGCGCACCAACTCGGAGCAAGTGGAT
GAGGACGCTGATGTGGACACAGCCATGGCCTCCCTTGACGAACAATCTAGAGAGGCCCAGCCAC
CGTCACCAAGGCCTACCAGCCCCTGCCAGACCCCAGAGCCAGACAATGAAGTCCACATTCGCAG
CTCCTCTCGCCCCTGCAGCCCTGTCCACCACCACGAGGGCCATACCAAGCTGTCCAGCAGCCCT
CCTCGTGCAAGCCCCGTGAGGATGGGGCCATCGTACGTGCTCAAGAAAGCCCAGGTGCCGAGTA
CTGGTGGCCGGAGGCGGAAGGAACAGAGCTACCGCAGTGTCATCTCAGATGTCTTCAATGGCTC
TGTCCTCAGCCTGGTGCAGTGTCTTACCTGTGATCGGGTGTCTACCACAGTGGAGACATTCCAG
GACCTGTCATTGCCCATCCCTGGCAAGGAAGACCTAGCCAAACTTCACTCTGCCATCTACCAGA
ATGTACCAGCCAAGCCGGGTGCCTGTGGGGACAGCTATTCCTCCCAGGGCTGGCTGGCCTTCAT
CGTGGAGTACATCCGACGGTTTGTGGTATCCTGTACCCCCAGCTGGTTTTGGGGACCTGTTGTC
ACACTGGAAGACTGCCTGGCTGCTTTCTTTGCTGCTGATGAGCTGAAGGGTGACAATATGTACA
GCTGTGAGCGCTGTAAGAAGCTTCGGAATGGCGTGAAGTACTGTAAAGTCCTCTGTCTGCCTGA
GATTCTGTGTGTCCACCTGAAGCGCTTCCGGCATGAGGTGATGTACTCCTTCAAAGTCAGCAGC
CATGTCTCTTTCCCCCTGGAGGGACTTGACCTACGCCCTTTTCTAGCCAAGGAGTGCACATCCC
AGGTCACCACCTATGACCTCCTCTCTGTCATTTGTCACCACGGCACAGCAGGCAGTGGGCACTA
CATTGCCTACTGTCAGAACGTGATCAATGGGCAGTGGTATGAGTTTGATGACCAGTACGTCACC
GAGGTCCATGAGACTGTGGTACAGAATGTGGAGGCCTACGTGCTCTTCTACAGGAAGAGCAGTG
AGGAGGCCATGCGTGAGCGGCAGCAGGTGGTGTCCCTGGCTGCCATGCAGGAACCCAGCCTGCT
CCGCTTCTACGTGTCCCGAGAATGGCTCAACAAGTTCAACACCTTTGCAGAGCCAGGGCCCATC
ACCAACCACACCTTCCTGTGCCCCCATGGAGGTATCCCACCCAATAAATACCATTACATTGATG
ACCTGGTGGTCATTCTGCCGCAGAGCGTCTGGGAGCACCTGTACAGCAGGTTTGGGGGCGGCCC
TGCTGTGAACCATCTGTATGTGTGCTCCATCTGCCAGGTGGAGATTGAGGCCCTGGCCAAGCGC
AGGAGGGTGGAGATTGACACTTTCATCAAGCTGAACAAGGCATTCCAAGCCGAGGAGTCTCCCG
GGGTCATCTACTGCATCAGCATGCACTGGTTCCGAGAGTGGGAGGCTTTCGTCAAGGGGAAGGA
CAGCGAGCCTCCAGGGCCCATCGACAACAGCAGGATTGCACAGGTCAAAGGCAGTGGTCATATC
CAGCTAAAGCAGGGGGCTGACTACGGGCAGATTTCTGAGGAGACCTGGACCTATCTGAACAGTC
TGTATGGGGGTGGCCCTGAGATTGCCATCCGGCAGAGTGTGGCCCAGCTCCCAGACCCAGAAAG
CTTGCATGGAGAGCAGAAGATTGAGGCTGAAACCCGGGCTCTGTGACTTGGGCCATGCTGAGTT
GGTGTGGCTGGCCCTACTCCCTCTCCAGACAGCCCTGCATCCCTCTGAAGGCTGTGTTCTGCTG
AGTGCCCACTGTCCCTGAAGGCTGGTATCCGACATTCCCCAGAGGGTGTGTCTGCCCTGCAGCT
GAGCTGCTGCGTGCCTGGTACCGGGGCTGAGAGCGGCTGGTCCGCCTGAGAGATGCTATGCTGG
GAAATATATCCGCTCAGACTTGAGAACTCCGACTGTCATCGCTGTGTCCCCCAAACTTGCCCTC
TTGCTAACTTGGGCCCAGCTTTTGTCCCAGGAGCCCCGTGCTGTTCCTTAGCCAATGCTGACCC
CTGGGACGGGGGGCTAGGAGCGGCTGCCACCTTTTGGGTATTATCTGCTGTATACTTGGCCCAA
CACTTTAGGGACTTAGGGAGGTAGATGTCTGTGCACAGGGGCAGAATGGATGTGGGGCTCTGTG
TAGGTCAGCAGCCCCTCATATCACAGTGGAGGCCCCGGCTGCCCATGTTTGTTCTGTTGACTAC
TCTTGTACTTGGAACAGAGAAAGGGCAAGTTTTGCTTTAGAGGGCAGAGGCCCTGCCCCCTTGT
CCTGCTGAGTCCACTGGCAGACTGGCTGTCGTTTGCCCTGGGAAGTGGCTCCTAGGCCCCTAGG
GGAGGGAAACAGATACCTCATGCACTGGTCCACTGATGCTTATTCAGCCTTCCGTGTGCTCTAG
AGTGAGCCTGATCCCCTGCCCGCACCCAGCCTTGGCGTCTAGAGCTGACTCTGAGGGGATGTGA
GCTGTGGCCACTCGCACAGGCATGTGTCTGGAGTGTCCTGCTAGGCTGCTGGAGAGGTGCTGGG
ACCTGCTGAGCCTAGAGAGTCTGCCCTGTGTTTGGAGTCCTGAAGAAGCCTGAACAGAGCTTCC
AGGACAAGCTGTTCAAAGCTAAGACTGGGGTGGTGAGGGTGGATCCTGGGACCAAGAGGGCTGC
AGTGGCCACCAGTCTCTTCAGAAGTGGAAGTGGACACTAGCCCAAAGACCTGGGCATTTAGTGT
CCTATTGAGGTGGGTGCCATGTGGATCCTTAGTCGGCTGCTGCTGGGACATGCCCTGTTGGCTG
CCATCTTTTGAAGTCTCTGTTGTGGAGCCCTTAGCTCATTGCACTACTGTGACACAGTCTGGGT
TGTGTTCAGAATGTCACAATAAATACGTGTTCCTCTCCTGCCCCTAGCTTGTACTGTGACACCG
TGGTGTTTGCCTTCACTGGTGATAAACACAGCCAGAGGTCCTGTGGAAGCTTCTGGGAGGAGCT
GGAACACTTGAAATACCAACCGTGTCTTTCCTGGAACCCACCAACCCAGGGGGCCCAGCAGGGA
TGTATTGGTGGCCAGCACGTCCCATGTGCTGGCTGCTCAACTCCAGTCCCGTTTATGTTTGCTC
CTTGGGGAGAAGGATTAGAGAGTATGTATTACTTTAAAAGCATTGAGTTAGGGGCTTGGGGTGT
AGCTCAGTGGTCAAGCATATCATGGGACTCAGGTTCAATCAGTCCTGTGTGGGAGAGCACACTG
TGGTCATTGACAACTCATCATACTGAAGGGTTTGGGAGCACAGAAGAGAAACCAAGGTTAAAAC
CTTCCCGAAGCCAGAAATAATGGCGTACAACTCTAGCCCAGCATTTGGAAGGCAGAGGGAGGAG
GGTCAAGAGTTCAAGATCATCAGCTGCGTAGGGAGTTGGAGGCTACAGGACGTCTCAAAACAAA
AGTCCACCAAACTAAAACCACCTGTAGGACTGGGACTGGGCCTCAGTTGACAGAGTCTATCTGA
TATGCATGAAACCTCAGGTTCAATCCCTGACACTTAGTCAGGGCTGGTGGAAGGAACCTGCTTG
AAATAGAAGCTGCAGGGTGAGGCAGGAGGCCATCCTTGGTCACCTGATAAGAGGAGCCAGTGTG
AGCCCCCATGTCCCGCCTCTGTTTACATGTTACATGTTACTACATGTGGGTGGCTTCTTAAGGT
GAAATTCTGTCTGGAGTCATTTCAGTGGCTTGGCAATGGTGAGCAAGCTAAAAATAGATTCCCT
GATTGGCCTCAACATGCATCTGTAGTTTTTCTTGAAATAAACACCCAGCTCTTAAGAGGG

hide sequence

RefSeq Acc Id:

XM_006233916 ⟹ XP_006233978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,676,809 - 34,703,347 (+)	NCBI
mRatBN7.2	3	14,279,048 - 14,306,409 (+)	NCBI
Rnor_6.0	3	9,827,961 - 9,856,052 (+)	NCBI
Rnor_5.0	3	15,181,259 - 15,214,732 (+)	NCBI

Sequence:

show sequence

ATTAATCCGGCTGGCCTGGAATTTGCAATGTAGACCAGGCTGCCGTTGAAGTCACAAAGAATCT
ACCAGCCTCTACTTCCCAAATGCTGGGATTAAAGCATGTGCCGCTATGCCCAGTTTTACACAGT
GTTGGGACTCAAACCCAGGGCTTCAGGCATGCCAGGCAAGCATGTGTATCCTGTGCCAGCTGAG
CCATAACTCTTGCCCTCTCGGCTGGGTTTTTGGTTGTTTTTTTTTTTTTTCTTTTGCTCTTCTC
TATAGCTCAGACAGACCTGAAACTCAAAATCCTCCTGCCTTAGTAACCCGAGTGCTGAGGTGAT
AGGCGTGCGCCATCACTTGTGGGGTGACTCTCATTTAAACTTCCTCGTGTGCGGCTGTGGACCG
CATGCCCATCCTCCATACCAGATGCCATAGTAACGACCAACAGGTGCTAGCAACAGATGCAGTG
GGGTTGCAGGATCTGTGAACGAAGCAGCCCGATGTGGCCAGGAAAGGCCAAGCTCCTCATGTCG
GCTCTGTTGGACAGTTTGCCCGATGACTAAGCCCGGTTCCATGCTGACCTGTGTGTTGATGAAG
CTGACCACCAGGCAAGCAGCCAGGTGCTCGGCCATGGACAAACTCAATGAAGCCTCTCCTGTCT
CTTCTAGAGTAGCTTCTGAGGCTTCTTAGCCACTGGGCTTTTATTCTCCTATGGGGCCTGGGGC
AGGAGGTGAGTTTGAAACCAGCTTGGTCTGTACAGTGAATTCTAGGTCAACCTAGGCTACATAG
TGAGACTTTGTATGACAAAAAAAACTGTCATTGCCCTTCAGTTCTGATCGCCAGAATCATAACC
AGGCTCCCCAAACCTCATGTCATCCCTCTGGAATGGTGGTACTGTGACAAGAGCTCTAAACCCC
ACCCCTGCCCAAAATAACCCTGGGCCAGTGCCAGCAGGCACTTGGCCTCCCGACTGAGGAACAA
AACCTGACTTCAAGTTAGGTTTGGAATTTAGAACTTTGAACCCTGTTGTTGTCATGTGGCCATT
TTAAAAGTTACCTTCTAACTGCCCCTCCCTCTTTGAACTGCCCGCATCTGGGAGACTGTGGTCC
ACCCTAGGGAGGGAAGAGGCAACTCAGTCAGTCAACTTGTAGTGTTGTAGCCCCTGGTGGCTGA
AGACTTGGTGCTCTGAGCAGCTCAGGGTTTTGGAAAGGCTTAAAAGGTGCCTTGTCGGAGGCTT
TACTGCCGAGCCCCTTGTCAGCCGGTCACTGTCCACAGAAAATGTACACATCGGCCTCCTCTGT
GTGCTGCTGAGTCAGGGGAGGCTGGCCAGAATGGGGGACGCCAGAGACATCTGCCCTCACCTGG
ACTCCATAGGGGAGGTGACCAAAGAGGACTTGCTGCTTAAATCTAAGGGGACCTGCCAGTCCTG
TGGTGTTGCTGGACCTAACCTATGGGCTTGCCTCCAGGTCACCTGCCCCTATGTTGGCTGTGGA
GAGTCTTTTGCTGACCATAGCAGCATTCATGCACAGGTGAAAAGGCACAACCTGACTGTGAACC
TGACTACGTTACGGGTGTGGTGCTACGCCTGTGAGCGGGAAGTCTTTCTGGAGCAGCGCCTGGC
AGTCCACCTGCCCAGCTCCTCAGCCAGGCTCTCAGAGCAGGACTCCCCACCACCCTGCCACCCT
CTGAAAGCTGTCCCTATTGCCGTGGCTGATGAGGGAGAGTCTGAGTCTGAGGACGATGACCTGA
AGCCTCGAGGCCTCACAGGCATGAAGAACCTGGGGAACTCCTGTTACATGAATGCTGCCCTGCA
GGCCTTGTCCAATTGCCCCCCACTCACCCAGTTCTTCCTGGAGTGTGGTGGCCTGGTGCGAACA
GACAAGAAGCCAGCCTTGTGCAAAAGTTACCAGAAGTTGATCTCTGAGGTCTGGCACAAGAAAC
GGCCAAGCTATGTGGTCCCCACCAGCCTATCCCATGGGATCAAGTTGGTCAACCCGATGTTCCG
AGGCTATGCCCAGCAGGACACCCAGGAGTTCCTACGCTGCCTGATGGACCAGCTTCACGAGGAG
CTCAAGGAGCCCATGGTAGCTGCTGTGGCAGCTCTCACTGATGCTCGGGACTCAGATTCCAGTG
ACACAGATGAGAGGCGTGATGGCGACCGGAGCCCTTCAGAGGACGAGTTTCTGTCCTGTGACTC
GAGCAGTGACAGGGGTGAGGGTGATGGGCAGGGCCGTGGTGGAGGCAGCTCAAAGGCTGAGATG
GAGCTGCTGATCTCAGACGAGGCGGGCCGAGCCATCTCTGAGAAAGAGCGAATGAAGGACCGCA
AGTTCTCCTGGGGCCAGCAGCGCACCAACTCGGAGCAAGTGGATGAGGACGCTGATGTGGACAC
AGCCATGGCCTCCCTTGACGAACAATCTAGAGAGGCCCAGCCACCGTCACCAAGGCCTACCAGC
CCCTGCCAGACCCCAGAGCCAGACAATGAAGTCCACATTCGCAGCTCCTCTCGCCCCTGCAGCC
CTGTCCACCACCACGAGGGCCATACCAAGCTGTCCAGCAGCCCTCCTCGTGCAAGCCCCGTGAG
GATGGGGCCATCGTACGTGCTCAAGAAAGCCCAGGTGCCGAGTACTGGTGGCCGGAGGCGGAAG
GAACAGAGCTACCGCAGTGTCATCTCAGATGTCTTCAATGGCTCTGTCCTCAGCCTGGTGCAGT
GTCTTACCTGTGATCGGGTGTCTACCACAGTGGAGACATTCCAGGACCTGTCATTGCCCATCCC
TGGCAAGGAAGACCTAGCCAAACTTCACTCTGCCATCTACCAGAATGTACCAGCCAAGCCGGGT
GCCTGTGGGGACAGCTATTCCTCCCAGGGCTGGCTGGCCTTCATCGTGGAGTACATCCGACGGT
TTGTGGTATCCTGTACCCCCAGCTGGTTTTGGGGACCTGTTGTCACACTGGAAGACTGCCTGGC
TGCTTTCTTTGCTGCTGATGAGCTGAAGGGTGACAATATGTACAGCTGTGAGCGCTGTAAGAAG
CTTCGGAATGGCGTGAAGTACTGTAAAGTCCTCTGTCTGCCTGAGATTCTGTGTGTCCACCTGA
AGCGCTTCCGGCATGAGGTGATGTACTCCTTCAAAGTCAGCAGCCATGTCTCTTTCCCCCTGGA
GGGACTTGACCTACGCCCTTTTCTAGCCAAGGAGTGCACATCCCAGGTCACCACCTATGACCTC
CTCTCTGTCATTTGTCACCACGGCACAGCAGGCAGTGGGCACTACATTGCCTACTGTCAGAACG
TGATCAATGGGCAGTGGTATGAGTTTGATGACCAGTACGTCACCGAGGTCCATGAGACTGTGGT
ACAGAATGTGGAGGCCTACGTGCTCTTCTACAGGAAGAGCAGTGAGGAGGCCATGCGTGAGCGG
CAGCAGGTGGTGTCCCTGGCTGCCATGCAGGAACCCAGCCTGCTCCGCTTCTACGTGTCCCGAG
AATGGCTCAACAAGTTCAACACCTTTGCAGAGCCAGGGCCCATCACCAACCACACCTTCCTGTG
CCCCCATGGAGGTATCCCACCCAATAAATACCATTACATTGATGACCTGGTGGTCATTCTGCCG
CAGAGCGTCTGGGAGCACCTGTACAGCAGGTTTGGGGGCGGCCCTGCTGTGAACCATCTGTATG
TGTGCTCCATCTGCCAGGTGGAGATTGAGGCCCTGGCCAAGCGCAGGAGGGTGGAGATTGACAC
TTTCATCAAGCTGAACAAGGCATTCCAAGCCGAGGAGTCTCCCGGGGTCATCTACTGCATCAGC
ATGCACTGGTTCCGAGAGTGGGAGGCTTTCGTCAAGGGGAAGGACAGCGAGCCTCCAGGGCCCA
TCGACAACAGCAGGATTGCACAGGTCAAAGGCAGTGGTCATATCCAGCTAAAGCAGGGGGCTGA
CTACGGGCAGATTTCTGAGGAGACCTGGACCTATCTGAACAGTCTGTATGGGGGTGGCCCTGAG
ATTGCCATCCGGCAGAGTGTGGCCCAGCTCCCAGACCCAGAAAGCTTGCATGGAGAGCAGAAGA
TTGAGGCTGAAACCCGGGCTCTGTGACTTGGGCCATGCTGAGTTGGTGTGGCTGGCCCTACTCC
CTCTCCAGACAGCCCTGCATCCCTCTGAAGGCTGTGTTCTGCTGAGTGCCCACTGTCCCTGAAG
GCTGGTATCCGACATTCCCCAGAGGGTGTGTCTGCCCTGCAGCTGAGCTGCTGCGTGCCTGGTA
CCGGGGCTGAGAGCGGCTGGTCCGCCTGAGAGATGCTATGCTGGGAAATATATCCGCTCAGACT
TGAGAACTCCGACTGTCATCGCTGTGTCCCCCAAACTTGCCCTCTTGCTAACTTGGGCCCAGCT
TTTGTCCCAGGAGCCCCGTGCTGTTCCTTAGCCAATGCTGACCCCTGGGACGGGGGGCTAGGAG
CGGCTGCCACCTTTTGGGTATTATCTGCTGTATACTTGGCCCAACACTTTAGGGACTTAGGGAG
GTAGATGTCTGTGCACAGGGGCAGAATGGATGTGGGGCTCTGTGTAGGTCAGCAGCCCCTCATA
TCACAGTGGAGGCCCCGGCTGCCCATGTTTGTTCTGTTGACTACTCTTGTACTTGGAACAGAGA
AAGGGCAAGTTTTGCTTTAGAGGGCAGAGGCCCTGCCCCCTTGTCCTGCTGAGTCCACTGGCAG
ACTGGCTGTCGTTTGCCCTGGGAAGTGGCTCCTAGGCCCCTAGGGGAGGGAAACAGATACCTCA
TGCACTGGTCCACTGATGCTTATTCAGCCTTCCGTGTGCTCTAGAGTGAGCCTGATCCCCTGCC
CGCACCCAGCCTTGGCGTCTAGAGCTGACTCTGAGGGGATGTGAGCTGTGGCCACTCGCACAGG
CATGTGTCTGGAGTGTCCTGCTAGGCTGCTGGAGAGGTGCTGGGACCTGCTGAGCCTAGAGAGT
CTGCCCTGTGTTTGGAGTCCTGAAGAAGCCTGAACAGAGCTTCCAGGACAAGCTGTTCAAAGCT
AAGACTGGGGTGGTGAGGGTGGATCCTGGGACCAAGAGGGCTGCAGTGGCCACCAGTCTCTTCA
GAAGTGGAAGTGGACACTAGCCCAAAGACCTGGGCATTTAGTGTCCTATTGAGGTGGGTGCCAT
GTGGATCCTTAGTCGGCTGCTGCTGGGACATGCCCTGTTGGCTGCCATCTTTTGAAGTCTCTGT
TGTGGAGCCCTTAGCTCATTGCACTACTGTGACACAGTCTGGGTTGTGTTCAGAATGTCACAAT
AAATACGTGTTCCTCTCCTGCCCCTAGCTTGTACTGTGACACCGTGGTGTTTGCCTTCACTGGT
GATAAACACAGCCAGAGGTCCTGTGGAAGCTTCTGGGAGGAGCTGGAACACTTGAAATACCAAC
CGTGTCTTTCCTGGAACCCACCAACCCAGGGGGCCCAGCAGGGATGTATTGGTGGCCAGCACGT
CCCATGTGCTGGCTGCTCAACTCCAGTCCCGTTTATGTTTGCTCCTTGGGGAGAAGGATTAGAG
AGTATGTATTACTTTAAAAGCATTGAGTTAGGGGCTTGGGGTGTAGCTCAGTGGTCAAGCATAT
CATGGGACTCAGGTTCAATCAGTCCTGTGTGGGAGAGCACACTGTGGTCATTGACAACTCATCA
TACTGAAGGGTTTGGGAGCACAGAAGAGAAACCAAGGTTAAAACCTTCCCGAAGCCAGAAATAA
TGGCGTACAACTCTAGCCCAGCATTTGGAAGGCAGAGGGAGGAGGGTCAAGAGTTCAAGATCAT
CAGCTGCGTAGGGAGTTGGAGGCTACAGGACGTCTCAAAACAAAAGTCCACCAAACTAAAACCA
CCTGTAGGACTGGGACTGGGCCTCAGTTGACAGAGTCTATCTGATATGCATGAAACCTCAGGTT
CAATCCCTGACACTTAGTCAGGGCTGGTGGAAGGAACCTGCTTGAAATAGAAGCTGCAGGGTGA
GGCAGGAGGCCATCCTTGGTCACCTGATAAGAGGAGCCAGTGTGAGCCCCCATGTCCCGCCTCT
GTTTACATGTTACATGTTACTACATGTGGGTGGCTTCTTAAGGTGAAATTCTGTCTGGAGTCAT
TTCAGTGGCTTGGCAATGGTGAGCAAGCTAAAAATAGATTCCCTGATTGGCCTCAACATGCATC
TGTAGTTTTTCTTGAAATAAACACCCAGCTCTTAA

hide sequence

RefSeq Acc Id:

XM_017591848 ⟹ XP_017447337

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,676,811 - 34,703,347 (+)	NCBI
mRatBN7.2	3	14,279,048 - 14,306,409 (+)	NCBI
Rnor_6.0	3	9,827,961 - 9,856,052 (+)	NCBI

Sequence:

show sequence

ATTAATCCGGCTGGCCTGGAATTTGCAATGTAGACCAGGCTGCCGTTGAAGTCACAAAGAATCT
ACCAGCCTCTACTTCCCAAATGCTGGGATTAAAGCATGTGCCGCTATGCCCAGTTTTACACAGT
GTTGGGACTCAAACCCAGGGCTTCAGGCATGCCAGGCAAGCATGTGTATCCTGTGCCAGCTGAG
CCATAACTCTTGCCCTCTCGGCTGGGTTTTTGGTTGTTTTTTTTTTTTTTCTTTTGCTCTTCTC
TATAGCTCAGACAGACCTGAAACTCAAAATCCTCCTGCCTTAGTAACCCGAGTGCTGAGGTGAT
AGGCGTGCGCCATCACTTGTGGGGTGACTCTCATTTAAACTTCCTCGTGTGCGGCTGTGGACCG
CATGCCCATCCTCCATACCAGATGCCATAGTAACGACCAACAGGTGCTAGCAACAGATGCAGTG
GGGTTGCAGGATCTGTGAACGAAGCAGCCCGATGTGGCCAGGAAAGGCCAAGCTCCTCATGTCG
GCTCTGTTGGACAGTTTGCCCGATGACTAAGCCCGGTTCCATGCTGACCTGTGTGTTGATGAAG
CTGACCACCAGGCAAGCAGCCAGGTGCTCGGCCATGGACAAACTCAATGAAGCCTCTCCTGTCT
CTTCTAGAGTAGCTTCTGAGGCTTCTTAGCCACTGGGCTTTTATTCTCCTATGGGGCCTGGGGC
AGGAGGTGAGTTTGAAACCAGCTTGGTCTGTACAGTGAATTCTAGGTCAACCTAGGCTACATAG
TGAGACTTTGTATGACAAAAAAAACTGTCATTGCCCTTCAGTTCTGATCGCCAGAATCATAACC
AGGCTCCCCAAACCTCATGTCATCCCTCTGGAATGGTGGTACTGTGACAAGAGCTCTAAACCCC
ACCCCTGCCCAAAATAACCCTGGGCCAGTGCCAGCAGGCACTTGGCCTCCCGACTGAGGAACAA
AACCTGACTTCAAGTTAGGTTTGGAATTTAGAACTTTGAACCCTGTTGTTGTCATGTGGCCATT
TTAAAAGTTACCTTCTAACTGCCCCTCCCTCTTTGAACTGCCCGCATCTGGGAGACTGTGGTCC
ACCCTAGGGAGGGAAGAGGCAACTCAGTCAGTCAACTTGTAGTGTTGTAGCCCCTGGTGGCTGA
AGACTTGGTGCTCTGAGCAGCTCAGGGTTTTGGAAAGGCTTAAAAGGTGCCTTGTCGGAGGCTT
TACTGCCGAGCCCCTTGTCAGCCGGTCACTGTCCACAGAAAATGTACACATCGGCCTCCTCTGT
GTGCTGCTGAGTCAGGGGACCTGCCAGTCCTGTGGTGTTGCTGGACCTAACCTATGGGCTTGCC
TCCAGGTCACCTGCCCCTATGTTGGCTGTGGAGAGTCTTTTGCTGACCATAGCAGCATTCATGC
ACAGGTGAAAAGGCACAACCTGACTGTGAACCTGACTACGTTACGGGTGTGGTGCTACGCCTGT
GAGCGGGAAGTCTTTCTGGAGCAGCGCCTGGCAGTCCACCTGCCCAGCTCCTCAGCCAGGCTCT
CAGAGCAGGACTCCCCACCACCCTGCCACCCTCTGAAAGCTGTCCCTATTGCCGTGGCTGATGA
GGGAGAGTCTGAGTCTGAGGACGATGACCTGAAGCCTCGAGGCCTCACAGGCATGAAGAACCTG
GGGAACTCCTGTTACATGAATGCTGCCCTGCAGGCCTTGTCCAATTGCCCCCCACTCACCCAGT
TCTTCCTGGAGTGTGGTGGCCTGGTGCGAACAGACAAGAAGCCAGCCTTGTGCAAAAGTTACCA
GAAGTTGATCTCTGAGGTCTGGCACAAGAAACGGCCAAGCTATGTGGTCCCCACCAGCCTATCC
CATGGGATCAAGTTGGTCAACCCGATGTTCCGAGGCTATGCCCAGCAGGACACCCAGGAGTTCC
TACGCTGCCTGATGGACCAGCTTCACGAGGAGCTCAAGGAGCCCATGGTAGCTGCTGTGGCAGC
TCTCACTGATGCTCGGGACTCAGATTCCAGTGACACAGATGAGAGGCGTGATGGCGACCGGAGC
CCTTCAGAGGACGAGTTTCTGTCCTGTGACTCGAGCAGTGACAGGGGTGAGGGTGATGGGCAGG
GCCGTGGTGGAGGCAGCTCAAAGGCTGAGATGGAGCTGCTGATCTCAGACGAGGCGGGCCGAGC
CATCTCTGAGAAAGAGCGAATGAAGGACCGCAAGTTCTCCTGGGGCCAGCAGCGCACCAACTCG
GAGCAAGTGGATGAGGACGCTGATGTGGACACAGCCATGGCCTCCCTTGACGAACAATCTAGAG
AGGCCCAGCCACCGTCACCAAGGCCTACCAGCCCCTGCCAGACCCCAGAGCCAGACAATGAAGT
CCACATTCGCAGCTCCTCTCGCCCCTGCAGCCCTGTCCACCACCACGAGGGCCATACCAAGCTG
TCCAGCAGCCCTCCTCGTGCAAGCCCCGTGAGGATGGGGCCATCGTACGTGCTCAAGAAAGCCC
AGGTGCCGAGTACTGGTGGCCGGAGGCGGAAGGAACAGAGCTACCGCAGTGTCATCTCAGATGT
CTTCAATGGCTCTGTCCTCAGCCTGGTGCAGTGTCTTACCTGTGATCGGGTGTCTACCACAGTG
GAGACATTCCAGGACCTGTCATTGCCCATCCCTGGCAAGGAAGACCTAGCCAAACTTCACTCTG
CCATCTACCAGAATGTACCAGCCAAGCCGGGTGCCTGTGGGGACAGCTATTCCTCCCAGGGCTG
GCTGGCCTTCATCGTGGAGTACATCCGACGGTTTGTGGTATCCTGTACCCCCAGCTGGTTTTGG
GGACCTGTTGTCACACTGGAAGACTGCCTGGCTGCTTTCTTTGCTGCTGATGAGCTGAAGGGTG
ACAATATGTACAGCTGTGAGCGCTGTAAGAAGCTTCGGAATGGCGTGAAGTACTGTAAAGTCCT
CTGTCTGCCTGAGATTCTGTGTGTCCACCTGAAGCGCTTCCGGCATGAGGTGATGTACTCCTTC
AAAGTCAGCAGCCATGTCTCTTTCCCCCTGGAGGGACTTGACCTACGCCCTTTTCTAGCCAAGG
AGTGCACATCCCAGGTCACCACCTATGACCTCCTCTCTGTCATTTGTCACCACGGCACAGCAGG
CAGTGGGCACTACATTGCCTACTGTCAGAACGTGATCAATGGGCAGTGGTATGAGTTTGATGAC
CAGTACGTCACCGAGGTCCATGAGACTGTGGTACAGAATGTGGAGGCCTACGTGCTCTTCTACA
GGAAGAGCAGTGAGGAGGCCATGCGTGAGCGGCAGCAGGTGGTGTCCCTGGCTGCCATGCAGGA
ACCCAGCCTGCTCCGCTTCTACGTGTCCCGAGAATGGCTCAACAAGTTCAACACCTTTGCAGAG
CCAGGGCCCATCACCAACCACACCTTCCTGTGCCCCCATGGAGGTATCCCACCCAATAAATACC
ATTACATTGATGACCTGGTGGTCATTCTGCCGCAGAGCGTCTGGGAGCACCTGTACAGCAGGTT
TGGGGGCGGCCCTGCTGTGAACCATCTGTATGTGTGCTCCATCTGCCAGGTGGAGATTGAGGCC
CTGGCCAAGCGCAGGAGGGTGGAGATTGACACTTTCATCAAGCTGAACAAGGCATTCCAAGCCG
AGGAGTCTCCCGGGGTCATCTACTGCATCAGCATGCACTGGTTCCGAGAGTGGGAGGCTTTCGT
CAAGGGGAAGGACAGCGAGCCTCCAGGGCCCATCGACAACAGCAGGATTGCACAGGTCAAAGGC
AGTGGTCATATCCAGCTAAAGCAGGGGGCTGACTACGGGCAGATTTCTGAGGAGACCTGGACCT
ATCTGAACAGTCTGTATGGGGGTGGCCCTGAGATTGCCATCCGGCAGAGTGTGGCCCAGCTCCC
AGACCCAGAAAGCTTGCATGGAGAGCAGAAGATTGAGGCTGAAACCCGGGCTCTGTGACTTGGG
CCATGCTGAGTTGGTGTGGCTGGCCCTACTCCCTCTCCAGACAGCCCTGCATCCCTCTGAAGGC
TGTGTTCTGCTGAGTGCCCACTGTCCCTGAAGGCTGGTATCCGACATTCCCCAGAGGGTGTGTC
TGCCCTGCAGCTGAGCTGCTGCGTGCCTGGTACCGGGGCTGAGAGCGGCTGGTCCGCCTGAGAG
ATGCTATGCTGGGAAATATATCCGCTCAGACTTGAGAACTCCGACTGTCATCGCTGTGTCCCCC
AAACTTGCCCTCTTGCTAACTTGGGCCCAGCTTTTGTCCCAGGAGCCCCGTGCTGTTCCTTAGC
CAATGCTGACCCCTGGGACGGGGGGCTAGGAGCGGCTGCCACCTTTTGGGTATTATCTGCTGTA
TACTTGGCCCAACACTTTAGGGACTTAGGGAGGTAGATGTCTGTGCACAGGGGCAGAATGGATG
TGGGGCTCTGTGTAGGTCAGCAGCCCCTCATATCACAGTGGAGGCCCCGGCTGCCCATGTTTGT
TCTGTTGACTACTCTTGTACTTGGAACAGAGAAAGGGCAAGTTTTGCTTTAGAGGGCAGAGGCC
CTGCCCCCTTGTCCTGCTGAGTCCACTGGCAGACTGGCTGTCGTTTGCCCTGGGAAGTGGCTCC
TAGGCCCCTAGGGGAGGGAAACAGATACCTCATGCACTGGTCCACTGATGCTTATTCAGCCTTC
CGTGTGCTCTAGAGTGAGCCTGATCCCCTGCCCGCACCCAGCCTTGGCGTCTAGAGCTGACTCT
GAGGGGATGTGAGCTGTGGCCACTCGCACAGGCATGTGTCTGGAGTGTCCTGCTAGGCTGCTGG
AGAGGTGCTGGGACCTGCTGAGCCTAGAGAGTCTGCCCTGTGTTTGGAGTCCTGAAGAAGCCTG
AACAGAGCTTCCAGGACAAGCTGTTCAAAGCTAAGACTGGGGTGGTGAGGGTGGATCCTGGGAC
CAAGAGGGCTGCAGTGGCCACCAGTCTCTTCAGAAGTGGAAGTGGACACTAGCCCAAAGACCTG
GGCATTTAGTGTCCTATTGAGGTGGGTGCCATGTGGATCCTTAGTCGGCTGCTGCTGGGACATG
CCCTGTTGGCTGCCATCTTTTGAAGTCTCTGTTGTGGAGCCCTTAGCTCATTGCACTACTGTGA
CACAGTCTGGGTTGTGTTCAGAATGTCACAATAAATACGTGTTCCTCTCCTGCCCCTAGCTTGT
ACTGTGACACCGTGGTGTTTGCCTTCACTGGTGATAAACACAGCCAGAGGTCCTGTGGAAGCTT
CTGGGAGGAGCTGGAACACTTGAAATACCAACCGTGTCTTTCCTGGAACCCACCAACCCAGGGG
GCCCAGCAGGGATGTATTGGTGGCCAGCACGTCCCATGTGCTGGCTGCTCAACTCCAGTCCCGT
TTATGTTTGCTCCTTGGGGAGAAGGATTAGAGAGTATGTATTACTTTAAAAGCATTGAGTTAGG
GGCTTGGGGTGTAGCTCAGTGGTCAAGCATATCATGGGACTCAGGTTCAATCAGTCCTGTGTGG
GAGAGCACACTGTGGTCATTGACAACTCATCATACTGAAGGGTTTGGGAGCACAGAAGAGAAAC
CAAGGTTAAAACCTTCCCGAAGCCAGAAATAATGGCGTACAACTCTAGCCCAGCATTTGGAAGG
CAGAGGGAGGAGGGTCAAGAGTTCAAGATCATCAGCTGCGTAGGGAGTTGGAGGCTACAGGACG
TCTCAAAACAAAAGTCCACCAAACTAAAACCACCTGTAGGACTGGGACTGGGCCTCAGTTGACA
GAGTCTATCTGATATGCATGAAACCTCAGGTTCAATCCCTGACACTTAGTCAGGGCTGGTGGAA
GGAACCTGCTTGAAATAGAAGCTGCAGGGTGAGGCAGGAGGCCATCCTTGGTCACCTGATAAGA
GGAGCCAGTGTGAGCCCCCATGTCCCGCCTCTGTTTACATGTTACATGTTACTACATGTGGGTG
GCTTCTTAAGGTGAAATTCTGTCTGGAGTCATTTCAGTGGCTTGGCAATGGTGAGCAAGCTAAA
AATAGATTCCCTGATTGGCCTCAACATGCATCTGTAGTTTTTCTTGAAATAAACACCCAGCTCT
TAA

hide sequence

RefSeq Acc Id:

XM_039105245 ⟹ XP_038961173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,670,758 - 34,703,347 (+)	NCBI
mRatBN7.2	3	14,273,358 - 14,306,369 (+)	NCBI

RefSeq Acc Id:

XM_039105246 ⟹ XP_038961174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,670,613 - 34,703,347 (+)	NCBI
mRatBN7.2	3	14,272,737 - 14,306,369 (+)	NCBI

RefSeq Acc Id:

XM_039105247 ⟹ XP_038961175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,670,614 - 34,703,347 (+)	NCBI
mRatBN7.2	3	14,272,737 - 14,306,369 (+)	NCBI

RefSeq Acc Id:

XM_063283962 ⟹ XP_063140032

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,675,607 - 34,703,347 (+)	NCBI

RefSeq Acc Id:

XM_063283963 ⟹ XP_063140033

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,670,614 - 34,703,347 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101297	(Get FASTA)	NCBI Sequence Viewer
	XP_006233978	(Get FASTA)	NCBI Sequence Viewer
	XP_017447337	(Get FASTA)	NCBI Sequence Viewer
	XP_038961173	(Get FASTA)	NCBI Sequence Viewer
	XP_038961174	(Get FASTA)	NCBI Sequence Viewer
	XP_038961175	(Get FASTA)	NCBI Sequence Viewer
	XP_063140032	(Get FASTA)	NCBI Sequence Viewer
	XP_063140033	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93284	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010786
	ENSRNOP00000010786.5
	ENSRNOP00000091528.2
	ENSRNOP00000091833.2
	ENSRNOP00000097493
	ENSRNOP00000097493.1
GenBank Protein	QST78076	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001101297 ⟸ NM_001107827

- UniProtKB:

D3ZLQ8 (UniProtKB/TrEMBL), A6JU13 (UniProtKB/TrEMBL), A0A8I6AC85 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDARDICPHLDSIGEVTKEDLLLKSKGTCQSCGVAGPNLWACLQVTCPYVGCGESFADHSSIH
AQVKRHNLTVNLTTLRVWCYACEREVFLEQRLAVHLPSSSARLSEQDSPPPCHPLKAVPIAVAD
EGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPALCKSY
QKLISEVWHKKRPSYVVPTSLSHGIKLVNPMFRGYAQQDTQEFLRCLMDQLHEELKEPMVAAVA
ALTDARDSDSSDTDERRDGDRSPSEDEFLSCDSSSDRGEGDGQGRGGGSSKAEMELLISDEAGR
AISEKERMKDRKFSWGQQRTNSEQVDEDADVDTAMASLDEQSREAQPPSPRPTSPCQTPEPDNE
VHIRSSSRPCSPVHHHEGHTKLSSSPPRASPVRMGPSYVLKKAQVPSTGGRRRKEQSYRSVISD
VFNGSVLSLVQCLTCDRVSTTVETFQDLSLPIPGKEDLAKLHSAIYQNVPAKPGACGDSYSSQG
WLAFIVEYIRRFVVSCTPSWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKV
LCLPEILCVHLKRFRHEVMYSFKVSSHVSFPLEGLDLRPFLAKECTSQVTTYDLLSVICHHGTA
GSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNVEAYVLFYRKSSEEAMRERQQVVSLAAMQ
EPSLLRFYVSREWLNKFNTFAEPGPITNHTFLCPHGGIPPNKYHYIDDLVVILPQSVWEHLYSR
FGGGPAVNHLYVCSICQVEIEALAKRRRVEIDTFIKLNKAFQAEESPGVIYCISMHWFREWEAF
VKGKDSEPPGPIDNSRIAQVKGSGHIQLKQGADYGQISEETWTYLNSLYGGGPEIAIRQSVAQL
PDPESLHGEQKIEAETRAL

hide sequence

RefSeq Acc Id:	XP_006233978 ⟸ XM_006233916
- Peptide Label:	isoform X1
- UniProtKB:	D3ZLQ8 (UniProtKB/TrEMBL), A6JU13 (UniProtKB/TrEMBL), A0A8I6AC85 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGDARDICPHLDSIGEVTKEDLLLKSKGTCQSCGVAGPNLWACLQVTCPYVGCGESFADHSSIH AQVKRHNLTVNLTTLRVWCYACEREVFLEQRLAVHLPSSSARLSEQDSPPPCHPLKAVPIAVAD EGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPALCKSY QKLISEVWHKKRPSYVVPTSLSHGIKLVNPMFRGYAQQDTQEFLRCLMDQLHEELKEPMVAAVA ALTDARDSDSSDTDERRDGDRSPSEDEFLSCDSSSDRGEGDGQGRGGGSSKAEMELLISDEAGR AISEKERMKDRKFSWGQQRTNSEQVDEDADVDTAMASLDEQSREAQPPSPRPTSPCQTPEPDNE VHIRSSSRPCSPVHHHEGHTKLSSSPPRASPVRMGPSYVLKKAQVPSTGGRRRKEQSYRSVISD VFNGSVLSLVQCLTCDRVSTTVETFQDLSLPIPGKEDLAKLHSAIYQNVPAKPGACGDSYSSQG WLAFIVEYIRRFVVSCTPSWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKV LCLPEILCVHLKRFRHEVMYSFKVSSHVSFPLEGLDLRPFLAKECTSQVTTYDLLSVICHHGTA GSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNVEAYVLFYRKSSEEAMRERQQVVSLAAMQ EPSLLRFYVSREWLNKFNTFAEPGPITNHTFLCPHGGIPPNKYHYIDDLVVILPQSVWEHLYSR FGGGPAVNHLYVCSICQVEIEALAKRRRVEIDTFIKLNKAFQAEESPGVIYCISMHWFREWEAF VKGKDSEPPGPIDNSRIAQVKGSGHIQLKQGADYGQISEETWTYLNSLYGGGPEIAIRQSVAQL PDPESLHGEQKIEAETRAL hide sequence

RefSeq Acc Id:	XP_017447337 ⟸ XM_017591848
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AC85 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLISEVWHKKRPSYVVP TSLSHGIKLVNPMFRGYAQQDTQEFLRCLMDQLHEELKEPMVAAVAALTDARDSDSSDTDERRD GDRSPSEDEFLSCDSSSDRGEGDGQGRGGGSSKAEMELLISDEAGRAISEKERMKDRKFSWGQQ RTNSEQVDEDADVDTAMASLDEQSREAQPPSPRPTSPCQTPEPDNEVHIRSSSRPCSPVHHHEG HTKLSSSPPRASPVRMGPSYVLKKAQVPSTGGRRRKEQSYRSVISDVFNGSVLSLVQCLTCDRV STTVETFQDLSLPIPGKEDLAKLHSAIYQNVPAKPGACGDSYSSQGWLAFIVEYIRRFVVSCTP SWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLCLPEILCVHLKRFRHEV MYSFKVSSHVSFPLEGLDLRPFLAKECTSQVTTYDLLSVICHHGTAGSGHYIAYCQNVINGQWY EFDDQYVTEVHETVVQNVEAYVLFYRKSSEEAMRERQQVVSLAAMQEPSLLRFYVSREWLNKFN TFAEPGPITNHTFLCPHGGIPPNKYHYIDDLVVILPQSVWEHLYSRFGGGPAVNHLYVCSICQV EIEALAKRRRVEIDTFIKLNKAFQAEESPGVIYCISMHWFREWEAFVKGKDSEPPGPIDNSRIA QVKGSGHIQLKQGADYGQISEETWTYLNSLYGGGPEIAIRQSVAQLPDPESLHGEQKIEAETRA L hide sequence

Ensembl Acc Id:

ENSRNOP00000076274 ⟸ ENSRNOT00000093718

Ensembl Acc Id:

ENSRNOP00000010786 ⟸ ENSRNOT00000010786

RefSeq Acc Id:	XP_038961174 ⟸ XM_039105246
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ARX9 (UniProtKB/TrEMBL), A0A8I6AC85 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961175 ⟸ XM_039105247
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AC85 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961173 ⟸ XM_039105245
- Peptide Label:	isoform X1
- UniProtKB:	D3ZLQ8 (UniProtKB/TrEMBL), A6JU13 (UniProtKB/TrEMBL), A0A8I6AC85 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091528 ⟸ ENSRNOT00000114728

Ensembl Acc Id:

ENSRNOP00000091833 ⟸ ENSRNOT00000114450

Ensembl Acc Id:

ENSRNOP00000097493 ⟸ ENSRNOT00000116274

RefSeq Acc Id:	XP_063140033 ⟸ XM_063283963
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AC85 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140032 ⟸ XM_063283962
- Peptide Label:	isoform X1
- UniProtKB:	A6JU13 (UniProtKB/TrEMBL), D3ZLQ8 (UniProtKB/TrEMBL), A0A8I6AC85 (UniProtKB/TrEMBL)

Protein Domains

DUSP UBP-type USP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZLQ8-F1-model_v2	AlphaFold	D3ZLQ8	1-915	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691972

Promoter ID:

EPDNEW_R2497

Type:

multiple initiation site

Name:

Usp20_1

Description:

ubiquitin specific peptidase 20

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	9,822,622 - 9,822,682	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305621	AgrOrtholog
BioCyc Gene	G2FUF-50188	BioCyc
Ensembl Genes	ENSRNOG00000007710	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010786	ENTREZGENE
	ENSRNOT00000010786.9	UniProtKB/TrEMBL
	ENSRNOT00000114450.2	UniProtKB/TrEMBL
	ENSRNOT00000114728.2	UniProtKB/TrEMBL
	ENSRNOT00000116274	ENTREZGENE
	ENSRNOT00000116274.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.2230.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	DUSP-like_sf	UniProtKB/TrEMBL
	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_C19_DUSP	UniProtKB/TrEMBL
	Pept_C19ubi-hydrolase_C_CS	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Ub_carboxyl-term_hydrolase	UniProtKB/TrEMBL
	UCH/PAN2	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_UBP	UniProtKB/TrEMBL
KEGG Report	rno:311856	UniProtKB/TrEMBL
NCBI Gene	311856	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20	UniProtKB/TrEMBL
Pfam	DUSP	UniProtKB/TrEMBL
	UCH	UniProtKB/TrEMBL
	zf-UBP	UniProtKB/TrEMBL
PhenoGen	Usp20	PhenoGen
PROSITE	DUSP	UniProtKB/TrEMBL
	UCH_2_1	UniProtKB/TrEMBL
	UCH_2_2	UniProtKB/TrEMBL
	UCH_2_3	UniProtKB/TrEMBL
	ZF_UBP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007710	RatGTEx
SMART	DUSP	UniProtKB/TrEMBL
	ZnF_UBP	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF143791	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	A0A8A1UDY8_RAT	UniProtKB/TrEMBL
	A0A8I6AC85	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AGB2_RAT	UniProtKB/TrEMBL
	A0A8I6ARX9	ENTREZGENE, UniProtKB/TrEMBL
	A6JU13	ENTREZGENE, UniProtKB/TrEMBL
	D3ZLQ8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Usp20	ubiquitin specific peptidase 20	Usp20_predicted	ubiquitin specific protease 20 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Usp20_predicted	ubiquitin specific protease 20 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message