USP20 (ubiquitin specific peptidase 20) - Rat Genome Database

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Gene: USP20 (ubiquitin specific peptidase 20) Homo sapiens
Analyze
Symbol: USP20
Name: ubiquitin specific peptidase 20
RGD ID: 1313758
HGNC Page HGNC:12619
Description: Enables G protein-coupled receptor binding activity; cysteine-type deubiquitinase activity; and cysteine-type endopeptidase activity. Involved in antiviral innate immune response; positive regulation of autophagy; and regulation of signal transduction. Located in centrosome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: deubiquitinating enzyme 20; hVDU2; KIAA1003; LSFR3A; pVHL-interacting deubiquitinating enzyme 2; ubiquitin carboxyl-terminal hydrolase 20; ubiquitin specific protease 20; ubiquitin thioesterase 20; ubiquitin thiolesterase 20; ubiquitin-specific-processing protease 20; VDU2; VHL-interacting deubiquitinating enzyme 2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389129,835,458 - 129,881,828 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9129,834,698 - 129,881,828 (+)EnsemblGRCh38hg38GRCh38
GRCh379132,597,737 - 132,644,107 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369131,637,570 - 131,683,928 (+)NCBINCBI36Build 36hg18NCBI36
Build 349129,677,302 - 129,723,661NCBI
Celera9103,248,726 - 103,295,216 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9102,196,523 - 102,243,074 (+)NCBIHuRef
CHM1_19132,746,720 - 132,793,117 (+)NCBICHM1_1
T2T-CHM13v2.09142,040,029 - 142,086,556 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10231032   PMID:10369878   PMID:12056827   PMID:12477932   PMID:12838346   PMID:12865408   PMID:15342556   PMID:15776016   PMID:16344560   PMID:17081983   PMID:17350623  
PMID:18029348   PMID:18976975   PMID:19424180   PMID:19615732   PMID:19851296   PMID:20198315   PMID:21525354   PMID:21873635   PMID:22118674   PMID:22552337   PMID:22626734   PMID:23166351  
PMID:23166591   PMID:23486064   PMID:24623722   PMID:24923443   PMID:24981860   PMID:25326330   PMID:25355518   PMID:25416956   PMID:25476789   PMID:25666616   PMID:25708858   PMID:26186194  
PMID:26275350   PMID:26839314   PMID:27801882   PMID:28167606   PMID:28514442   PMID:29346117   PMID:29487085   PMID:29576527   PMID:29676528   PMID:29867130   PMID:30021884   PMID:30279242  
PMID:30323974   PMID:30354204   PMID:30538132   PMID:30814308   PMID:31056421   PMID:31278784   PMID:31515488   PMID:31911859   PMID:32296183   PMID:32354117   PMID:32943575   PMID:33529762  
PMID:33669244   PMID:33792613   PMID:33961781   PMID:34079125   PMID:35405623   PMID:35869491   PMID:36636478   PMID:37311534  


Genomics

Comparative Map Data
USP20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389129,835,458 - 129,881,828 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9129,834,698 - 129,881,828 (+)EnsemblGRCh38hg38GRCh38
GRCh379132,597,737 - 132,644,107 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369131,637,570 - 131,683,928 (+)NCBINCBI36Build 36hg18NCBI36
Build 349129,677,302 - 129,723,661NCBI
Celera9103,248,726 - 103,295,216 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9102,196,523 - 102,243,074 (+)NCBIHuRef
CHM1_19132,746,720 - 132,793,117 (+)NCBICHM1_1
T2T-CHM13v2.09142,040,029 - 142,086,556 (+)NCBIT2T-CHM13v2.0
Usp20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,872,291 - 30,912,667 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,872,291 - 30,913,598 (+)EnsemblGRCm39 Ensembl
GRCm38230,982,279 - 31,022,655 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,982,279 - 31,023,586 (+)EnsemblGRCm38mm10GRCm38
MGSCv37230,837,799 - 30,878,175 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36230,818,051 - 30,845,595 (+)NCBIMGSCv36mm8
Celera230,688,074 - 30,728,467 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.77NCBI
Usp20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8334,670,613 - 34,704,156 (+)NCBIGRCr8
mRatBN7.2314,272,737 - 14,306,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,272,908 - 14,306,409 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx317,345,478 - 17,378,966 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,930,477 - 25,963,967 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,177,762 - 24,211,223 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,822,586 - 9,856,057 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,822,580 - 9,856,057 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0315,181,259 - 15,214,732 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4310,048,393 - 10,080,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.139,943,606 - 9,977,231 (+)NCBI
Celera39,031,454 - 9,063,927 (+)NCBICelera
Cytogenetic Map3p12NCBI
Usp20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495551342,809 - 70,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495551343,601 - 70,714 (+)NCBIChiLan1.0ChiLan1.0
USP20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,467,330 - 9,513,818 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan199,469,674 - 9,516,162 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09100,962,851 - 101,009,326 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19129,620,132 - 129,666,713 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9129,621,642 - 129,666,713 (+)Ensemblpanpan1.1panPan2
USP20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1953,966,180 - 54,009,312 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl953,966,183 - 54,009,317 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,163,042 - 53,206,314 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0954,863,745 - 54,906,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl954,863,743 - 54,906,925 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1953,641,038 - 53,684,206 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0953,963,134 - 54,006,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,056,181 - 54,099,449 (-)NCBIUU_Cfam_GSD_1.0
Usp20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,261,923 - 197,300,812 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,044,073 - 17,069,104 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,030,397 - 17,069,165 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,995,520 - 270,086,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,995,532 - 270,037,499 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,892,891 - 303,935,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1128,256,835 - 8,301,063 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl128,258,365 - 8,301,020 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660797,139,293 - 7,185,490 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247605,568,761 - 5,594,510 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247605,568,763 - 5,594,519 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in USP20
53 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000050348] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:122792658-138124532)x3 copy number gain See cases [RCV000051040] Chr9:122792658..138124532 [GRCh38]
Chr9:125554937..141018984 [GRCh37]
Chr9:124594758..140138805 [NCBI36]
Chr9:9q33.2-34.3		 pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121112395-138075224)x3 copy number gain See cases [RCV000051009] Chr9:121112395..138075224 [GRCh38]
Chr9:123874673..140969676 [GRCh37]
Chr9:122914494..140089497 [NCBI36]
Chr9:9q33.2-34.3		 pathogenic
GRCh38/hg38 9q34.11(chr9:127874581-130421811)x1 copy number loss See cases [RCV000052934] Chr9:127874581..130421811 [GRCh38]
Chr9:130636860..133297198 [GRCh37]
Chr9:129676681..132287019 [NCBI36]
Chr9:9q34.11		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 copy number gain See cases [RCV000053745] Chr9:193412..138124532 [GRCh38]
Chr9:204193..141018984 [GRCh37]
Chr9:194193..140138805 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q34.11-34.3(chr9:129068560-136495351)x3 copy number gain See cases [RCV000053779] Chr9:129068560..136495351 [GRCh38]
Chr9:131830839..139389803 [GRCh37]
Chr9:130870660..138509624 [NCBI36]
Chr9:9q34.11-34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 copy number gain See cases [RCV000053746] Chr9:193412..138114463 [GRCh38]
Chr9:214367..141008915 [GRCh37]
Chr9:204367..140128736 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] Chr9:193412..138179445 [GRCh38]
Chr9:266045..141073897 [GRCh37]
Chr9:256045..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121586837-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|See cases [RCV000053776] Chr9:121586837..138179445 [GRCh38]
Chr9:124349116..141073897 [GRCh37]
Chr9:123388937..140193718 [NCBI36]
Chr9:9q33.2-34.3		 pathogenic
GRCh38/hg38 9q34.11(chr9:127919476-130079974)x3 copy number gain See cases [RCV000053777] Chr9:127919476..130079974 [GRCh38]
Chr9:130681755..132842253 [GRCh37]
Chr9:129721576..131882074 [NCBI36]
Chr9:9q34.11		 pathogenic
GRCh38/hg38 9q34.11(chr9:129036400-130578683)x3 copy number gain See cases [RCV000053778] Chr9:129036400..130578683 [GRCh38]
Chr9:131798679..133454070 [GRCh37]
Chr9:130838500..132443891 [NCBI36]
Chr9:9q34.11		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) copy number gain See cases [RCV000133791] Chr9:204193..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q34.11-34.3(chr9:129068560-138179445)x3 copy number gain See cases [RCV000134916] Chr9:129068560..138179445 [GRCh38]
Chr9:131830839..141073897 [GRCh37]
Chr9:130870660..140193718 [NCBI36]
Chr9:9q34.11-34.3		 pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121073102-138179445)x3 copy number gain See cases [RCV000134920] Chr9:121073102..138179445 [GRCh38]
Chr9:123835380..141073897 [GRCh37]
Chr9:122875201..140193718 [NCBI36]
Chr9:9q33.2-34.3		 pathogenic
GRCh38/hg38 9q34.11-34.12(chr9:128839676-130912873)x3 copy number gain See cases [RCV000137775] Chr9:128839676..130912873 [GRCh38]
Chr9:131601955..133788260 [GRCh37]
Chr9:130641776..132778081 [NCBI36]
Chr9:9q34.11-34.12		 uncertain significance
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124524)x3 copy number gain See cases [RCV000138783] Chr9:193412..138124524 [GRCh38]
Chr9:204090..141018976 [GRCh37]
Chr9:194090..140138797 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9q34.11(chr9:129311649-129866376)x3 copy number gain See cases [RCV000138277] Chr9:129311649..129866376 [GRCh38]
Chr9:132073928..132628655 [GRCh37]
Chr9:131113749..131668476 [NCBI36]
Chr9:9q34.11		 likely benign
GRCh38/hg38 9p11.2-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000139207] Chr9:193412..138159073 [GRCh38]
Chr9:68420641..141053525 [GRCh37]
Chr9:67910461..140173346 [NCBI36]
Chr9:9p11.2-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000138962] Chr9:193412..138159073 [GRCh38]
Chr9:204104..141053525 [GRCh37]
Chr9:194104..140173346 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic|conflicting data from submitters
GRCh38/hg38 9p24.3-q34.3(chr9:203861-138125937)x3 copy number gain See cases [RCV000141876] Chr9:203861..138125937 [GRCh38]
Chr9:203861..141020389 [GRCh37]
Chr9:193861..140140210 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:203862-138125937)x3 copy number gain See cases [RCV000143476] Chr9:203862..138125937 [GRCh38]
Chr9:203862..141020389 [GRCh37]
Chr9:193862..140140210 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000148113] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:163131-141122114)x3 copy number gain See cases [RCV000240081] Chr9:163131..141122114 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:62525-141006407) copy number gain See cases [RCV000449375] Chr9:62525..141006407 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020389)x3 copy number gain not specified [RCV003986800] Chr9:203861..141020389 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q33.3-34.3(chr9:128652785-141044751)x3 copy number gain See cases [RCV000447080] Chr9:128652785..141044751 [GRCh37]
Chr9:9q33.3-34.3		 pathogenic
GRCh37/hg19 9q34.11(chr9:130390139-132760275)x1 copy number loss See cases [RCV000445837] Chr9:130390139..132760275 [GRCh37]
Chr9:9q34.11		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203864-141020389)x3 copy number gain See cases [RCV000448978] Chr9:203864..141020389 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q33.2-34.3(chr9:124642754-141146461)x3 copy number gain See cases [RCV000448784] Chr9:124642754..141146461 [GRCh37]
Chr9:9q33.2-34.3		 pathogenic
GRCh37/hg19 9q21.11-34.3(chr9:71069743-140999928) copy number gain Global developmental delay [RCV000626548] Chr9:71069743..140999928 [GRCh37]
Chr9:9q21.11-34.3		 likely pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203862-141020389) copy number gain See cases [RCV000512392] Chr9:203862..141020389 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141114095)x2 copy number gain not provided [RCV000748054] Chr9:10590..141114095 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q33.3-34.12(chr9:129370440-133866894)x1 copy number loss not provided [RCV000748671] Chr9:129370440..133866894 [GRCh37]
Chr9:9q33.3-34.12		 pathogenic
GRCh37/hg19 9q34.11-34.12(chr9:131413885-133866894)x1 copy number loss not provided [RCV000748699] Chr9:131413885..133866894 [GRCh37]
Chr9:9q34.11-34.12		 benign
GRCh37/hg19 9q34.11(chr9:132511956-132701805)x3 copy number gain not provided [RCV000748710] Chr9:132511956..132701805 [GRCh37]
Chr9:9q34.11		 benign
GRCh37/hg19 9q34.11(chr9:132585058-132967288)x3 copy number gain not provided [RCV000748711] Chr9:132585058..132967288 [GRCh37]
Chr9:9q34.11		 benign
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141122247)x3 copy number gain not provided [RCV000748055] Chr9:10590..141122247 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141107672)x3 copy number gain not provided [RCV000748053] Chr9:10590..141107672 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:46587-141066491)x3 copy number gain not provided [RCV000748063] Chr9:46587..141066491 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
NM_001110303.4(USP20):c.1101G>A (p.Pro367=) single nucleotide variant not provided [RCV000973703] Chr9:129868415 [GRCh38]
Chr9:132630694 [GRCh37]
Chr9:9q34.11		 benign
NM_001110303.4(USP20):c.2721C>T (p.Ile907=) single nucleotide variant not provided [RCV000965799] Chr9:129880249 [GRCh38]
Chr9:132642528 [GRCh37]
Chr9:9q34.11		 benign
NM_001110303.4(USP20):c.17A>T (p.Asp6Val) single nucleotide variant not specified [RCV004291447] Chr9:129852572 [GRCh38]
Chr9:132614851 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.535C>T (p.Leu179=) single nucleotide variant not provided [RCV000886078] Chr9:129863223 [GRCh38]
Chr9:132625502 [GRCh37]
Chr9:9q34.11		 benign
NM_001110303.4(USP20):c.864G>A (p.Ser288=) single nucleotide variant not provided [RCV000879132] Chr9:129868178 [GRCh38]
Chr9:132630457 [GRCh37]
Chr9:9q34.11		 benign
GRCh37/hg19 9q34.11-34.13(chr9:131670024-134514071) copy number loss not provided [RCV000767561] Chr9:131670024..134514071 [GRCh37]
Chr9:9q34.11-34.13		 likely pathogenic
NM_001110303.4(USP20):c.1129A>G (p.Thr377Ala) single nucleotide variant not specified [RCV004295864] Chr9:129868443 [GRCh38]
Chr9:132630722 [GRCh37]
Chr9:9q34.11		 uncertain significance
GRCh37/hg19 9q34.11(chr9:132183626-133431092)x3 copy number gain not provided [RCV000848121] Chr9:132183626..133431092 [GRCh37]
Chr9:9q34.11		 uncertain significance
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020388)x3 copy number gain not provided [RCV000845900] Chr9:203861..141020388 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q21.11-34.3(chr9:71416475-141020389)x3 copy number gain not provided [RCV000847808] Chr9:71416475..141020389 [GRCh37]
Chr9:9q21.11-34.3		 pathogenic
GRCh37/hg19 9q34.11(chr9:132617807-132776337)x3 copy number gain not provided [RCV000849584] Chr9:132617807..132776337 [GRCh37]
Chr9:9q34.11		 uncertain significance
GRCh37/hg19 9q34.11(chr9:132449921-132793004)x3 copy number gain not provided [RCV000846222] Chr9:132449921..132793004 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1086G>A (p.Ala362=) single nucleotide variant not provided [RCV000896534] Chr9:129868400 [GRCh38]
Chr9:132630679 [GRCh37]
Chr9:9q34.11		 benign
NM_001110303.4(USP20):c.308C>A (p.Ser103Tyr) single nucleotide variant not provided [RCV000890784] Chr9:129858576 [GRCh38]
Chr9:132620855 [GRCh37]
Chr9:9q34.11		 benign
GRCh37/hg19 9q34.11(chr9:132449937-132807448)x3 copy number gain not provided [RCV002473597] Chr9:132449937..132807448 [GRCh37]
Chr9:9q34.11		 uncertain significance
GRCh37/hg19 9q34.11(chr9:132449936-132795093)x3 copy number gain not provided [RCV001006276] Chr9:132449936..132795093 [GRCh37]
Chr9:9q34.11		 uncertain significance
GRCh37/hg19 9q34.11(chr9:132470092-133044256)x3 copy number gain not provided [RCV001259054] Chr9:132470092..133044256 [GRCh37]
Chr9:9q34.11		 uncertain significance
GRCh37/hg19 9q33.3-34.11(chr9:128523763-132604808)x3 copy number gain not provided [RCV001832977] Chr9:128523763..132604808 [GRCh37]
Chr9:9q33.3-34.11		 pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:353349-141020389) copy number gain not specified [RCV002053823] Chr9:353349..141020389 [GRCh37]
Chr9:9p24.3-q34.3		 pathogenic
GRCh37/hg19 9q34.11(chr9:130390139-132760275) copy number loss not specified [RCV002052848] Chr9:130390139..132760275 [GRCh37]
Chr9:9q34.11		 pathogenic
NC_000009.11:g.(?_131857676)_(135942612_?)dup duplication not provided [RCV003116730] Chr9:131857676..135942612 [GRCh37]
Chr9:9q34.11-34.2		 uncertain significance
NC_000009.11:g.(?_131087402)_(141016451_?)dup duplication Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome [RCV003119700] Chr9:131087402..141016451 [GRCh37]
Chr9:9q34.11-34.3		 uncertain significance
NM_001110303.4(USP20):c.922G>A (p.Glu308Lys) single nucleotide variant not specified [RCV004200187] Chr9:129868236 [GRCh38]
Chr9:132630515 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2408A>G (p.Lys803Arg) single nucleotide variant not specified [RCV004332193] Chr9:129876237 [GRCh38]
Chr9:132638516 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2171C>T (p.Ala724Val) single nucleotide variant not specified [RCV004114495] Chr9:129875432 [GRCh38]
Chr9:132637711 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1226C>G (p.Pro409Arg) single nucleotide variant not specified [RCV004162977] Chr9:129868952 [GRCh38]
Chr9:132631231 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2028G>C (p.Glu676Asp) single nucleotide variant not specified [RCV004148096] Chr9:129874935 [GRCh38]
Chr9:132637214 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2278G>A (p.Val760Ile) single nucleotide variant not specified [RCV004212129] Chr9:129875619 [GRCh38]
Chr9:132637898 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.206A>G (p.Lys69Arg) single nucleotide variant not specified [RCV004190019] Chr9:129858474 [GRCh38]
Chr9:132620753 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2378G>A (p.Arg793His) single nucleotide variant not specified [RCV004236015] Chr9:129876207 [GRCh38]
Chr9:132638486 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2576T>C (p.Leu859Pro) single nucleotide variant not specified [RCV004145812] Chr9:129879636 [GRCh38]
Chr9:132641915 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1264G>A (p.Val422Met) single nucleotide variant not specified [RCV004130080] Chr9:129868990 [GRCh38]
Chr9:132631269 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1951G>A (p.Val651Met) single nucleotide variant not specified [RCV004150457] Chr9:129874858 [GRCh38]
Chr9:132637137 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1685G>A (p.Arg562Gln) single nucleotide variant not specified [RCV004188092] Chr9:129873506 [GRCh38]
Chr9:132635785 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1564C>T (p.Arg522Trp) single nucleotide variant not specified [RCV004230345] Chr9:129869843 [GRCh38]
Chr9:132632122 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1224C>G (p.Ser408Arg) single nucleotide variant not specified [RCV004230750] Chr9:129868950 [GRCh38]
Chr9:132631229 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1171C>T (p.Arg391Cys) single nucleotide variant not specified [RCV004215499] Chr9:129868897 [GRCh38]
Chr9:132631176 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.889G>A (p.Gly297Arg) single nucleotide variant not specified [RCV004210290] Chr9:129868203 [GRCh38]
Chr9:132630482 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2707G>A (p.Gly903Arg) single nucleotide variant not specified [RCV004112091] Chr9:129880235 [GRCh38]
Chr9:132642514 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1990G>A (p.Val664Ile) single nucleotide variant not specified [RCV004185366] Chr9:129874897 [GRCh38]
Chr9:132637176 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2653G>A (p.Glu885Lys) single nucleotide variant not specified [RCV004162691] Chr9:129880181 [GRCh38]
Chr9:132642460 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1412C>T (p.Thr471Met) single nucleotide variant not specified [RCV004198539] Chr9:129869691 [GRCh38]
Chr9:132631970 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1130C>T (p.Thr377Met) single nucleotide variant not specified [RCV004227901] Chr9:129868444 [GRCh38]
Chr9:132630723 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2320G>A (p.Val774Met) single nucleotide variant not specified [RCV004126358] Chr9:129876149 [GRCh38]
Chr9:132638428 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1546A>G (p.Ile516Val) single nucleotide variant not specified [RCV004073461] Chr9:129869825 [GRCh38]
Chr9:132632104 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2102C>G (p.Ala701Gly) single nucleotide variant not specified [RCV004070944] Chr9:129875363 [GRCh38]
Chr9:132637642 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2065G>T (p.Ala689Ser) single nucleotide variant not specified [RCV004077051] Chr9:129875326 [GRCh38]
Chr9:132637605 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1109G>A (p.Arg370Gln) single nucleotide variant not specified [RCV004142496] Chr9:129868423 [GRCh38]
Chr9:132630702 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1369G>C (p.Val457Leu) single nucleotide variant not specified [RCV004106108] Chr9:129869402 [GRCh38]
Chr9:132631681 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.863C>T (p.Ser288Leu) single nucleotide variant not specified [RCV004073815] Chr9:129868177 [GRCh38]
Chr9:132630456 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.338C>T (p.Pro113Leu) single nucleotide variant not specified [RCV004114496] Chr9:129860944 [GRCh38]
Chr9:132623223 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2489C>T (p.Ala830Val) single nucleotide variant not specified [RCV004221205] Chr9:129878417 [GRCh38]
Chr9:132640696 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2615C>T (p.Thr872Ile) single nucleotide variant not specified [RCV004083597] Chr9:129880143 [GRCh38]
Chr9:132642422 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.749C>T (p.Pro250Leu) single nucleotide variant not specified [RCV004249727] Chr9:129868063 [GRCh38]
Chr9:132630342 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1212G>C (p.Lys404Asn) single nucleotide variant not specified [RCV004262549] Chr9:129868938 [GRCh38]
Chr9:132631217 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.988C>G (p.Arg330Gly) single nucleotide variant not specified [RCV004254027] Chr9:129868302 [GRCh38]
Chr9:132630581 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2431G>A (p.Glu811Lys) single nucleotide variant not specified [RCV004322666] Chr9:129878359 [GRCh38]
Chr9:132640638 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.667A>G (p.Met223Val) single nucleotide variant not specified [RCV004260340] Chr9:129865358 [GRCh38]
Chr9:132627637 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1084G>A (p.Ala362Thr) single nucleotide variant not specified [RCV004290886] Chr9:129868398 [GRCh38]
Chr9:132630677 [GRCh37]
Chr9:9q34.11		 likely benign
NM_001110303.4(USP20):c.439A>G (p.Met147Val) single nucleotide variant not specified [RCV004347937] Chr9:129861554 [GRCh38]
Chr9:132623833 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.730C>T (p.His244Tyr) single nucleotide variant not specified [RCV004365172] Chr9:129868044 [GRCh38]
Chr9:132630323 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2665C>T (p.Arg889Cys) single nucleotide variant not specified [RCV004342729] Chr9:129880193 [GRCh38]
Chr9:132642472 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1745T>C (p.Leu582Pro) single nucleotide variant not specified [RCV004353750] Chr9:129874580 [GRCh38]
Chr9:132636859 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.220G>A (p.Val74Met) single nucleotide variant not specified [RCV004338781] Chr9:129858488 [GRCh38]
Chr9:132620767 [GRCh37]
Chr9:9q34.11		 uncertain significance
GRCh37/hg19 9q34.11-34.12(chr9:132590008-133880465)x1 copy number loss not provided [RCV003483082] Chr9:132590008..133880465 [GRCh37]
Chr9:9q34.11-34.12		 uncertain significance
GRCh37/hg19 9q34.11-34.13(chr9:131815597-134209182)x1 copy number loss not specified [RCV003986823] Chr9:131815597..134209182 [GRCh37]
Chr9:9q34.11-34.13		 pathogenic
NM_001110303.4(USP20):c.283C>T (p.Arg95Trp) single nucleotide variant not specified [RCV004484628] Chr9:129858551 [GRCh38]
Chr9:132620830 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1124G>T (p.Cys375Phe) single nucleotide variant not specified [RCV004484613] Chr9:129868438 [GRCh38]
Chr9:132630717 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1159C>T (p.Arg387Cys) single nucleotide variant not specified [RCV004484614] Chr9:129868885 [GRCh38]
Chr9:132631164 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1177T>C (p.Cys393Arg) single nucleotide variant not specified [RCV004484615] Chr9:129868903 [GRCh38]
Chr9:132631182 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1183C>T (p.Pro395Ser) single nucleotide variant not specified [RCV004484616] Chr9:129868909 [GRCh38]
Chr9:132631188 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1318C>T (p.Arg440Cys) single nucleotide variant not specified [RCV004484617] Chr9:129869351 [GRCh38]
Chr9:132631630 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1588A>G (p.Ser530Gly) single nucleotide variant not specified [RCV004484618] Chr9:129870475 [GRCh38]
Chr9:132632754 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1659G>T (p.Lys553Asn) single nucleotide variant not specified [RCV004484619] Chr9:129870546 [GRCh38]
Chr9:132632825 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2125C>T (p.Arg709Trp) single nucleotide variant not specified [RCV004484620] Chr9:129875386 [GRCh38]
Chr9:132637665 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2141G>A (p.Arg714His) single nucleotide variant not specified [RCV004484621] Chr9:129875402 [GRCh38]
Chr9:132637681 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2264T>A (p.Ile755Asn) single nucleotide variant not specified [RCV004484622] Chr9:129875605 [GRCh38]
Chr9:132637884 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2269C>T (p.Pro757Ser) single nucleotide variant not specified [RCV004484623] Chr9:129875610 [GRCh38]
Chr9:132637889 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2498A>G (p.Lys833Arg) single nucleotide variant not specified [RCV004484625] Chr9:129878426 [GRCh38]
Chr9:132640705 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.268G>A (p.Val90Ile) single nucleotide variant not specified [RCV004484626] Chr9:129858536 [GRCh38]
Chr9:132620815 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.2740G>T (p.Val914Leu) single nucleotide variant not specified [RCV004484627] Chr9:129880268 [GRCh38]
Chr9:132642547 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.443A>G (p.Lys148Arg) single nucleotide variant not specified [RCV004484629] Chr9:129861558 [GRCh38]
Chr9:132623837 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.826C>T (p.Arg276Trp) single nucleotide variant not specified [RCV004484630] Chr9:129868140 [GRCh38]
Chr9:132630419 [GRCh37]
Chr9:9q34.11		 uncertain significance
NM_001110303.4(USP20):c.1085C>T (p.Ala362Val) single nucleotide variant not specified [RCV004484612] Chr9:129868399 [GRCh38]
Chr9:132630678 [GRCh37]
Chr9:9q34.11		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4342
Count of miRNA genes:1005
Interacting mature miRNAs:1234
Transcripts:ENST00000315480, ENST00000358355, ENST00000372429, ENST00000472108, ENST00000474895, ENST00000491053, ENST00000491731, ENST00000494971, ENST00000496927
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-58438  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379132,635,654 - 132,635,847UniSTSGRCh37
Build 369131,675,475 - 131,675,668RGDNCBI36
Celera9103,286,733 - 103,286,926RGD
Cytogenetic Map9q34.11UniSTS
HuRef9102,234,581 - 102,234,774UniSTS
TNG Radiation Hybrid Map950052.0UniSTS
RH12701  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379132,643,893 - 132,644,066UniSTSGRCh37
Build 369131,683,714 - 131,683,887RGDNCBI36
Celera9103,295,002 - 103,295,175RGD
Cytogenetic Map9q34.11UniSTS
HuRef9102,242,850 - 102,243,023UniSTS
D9S1766  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379132,643,844 - 132,644,068UniSTSGRCh37
Build 369131,683,665 - 131,683,889RGDNCBI36
Celera9103,294,953 - 103,295,177RGD
Cytogenetic Map9q34.11UniSTS
HuRef9102,242,801 - 102,243,025UniSTS
SHGC-147266  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379132,643,421 - 132,643,756UniSTSGRCh37
Build 369131,683,242 - 131,683,577RGDNCBI36
Celera9103,294,530 - 103,294,865RGD
Cytogenetic Map9q34.11UniSTS
HuRef9102,242,378 - 102,242,713UniSTS
TNG Radiation Hybrid Map950052.0UniSTS
USP20_9189  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379132,643,281 - 132,644,152UniSTSGRCh37
Build 369131,683,102 - 131,683,973RGDNCBI36
Celera9103,294,390 - 103,295,261RGD
HuRef9102,242,238 - 102,243,109UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2304 2017 1381 284 1733 128 3765 1218 3138 271 1411 1557 168 1067 2241 3
Low 135 974 345 340 218 337 592 979 596 148 49 56 7 1 137 547 3 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_033097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001008563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005251665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011518161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011518162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024447389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024447390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB023220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL158207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY074877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF727180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM678735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP246486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ882312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX462233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA791069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000315480   ⟹   ENSP00000313811
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,835,458 - 129,881,828 (+)Ensembl
RefSeq Acc Id: ENST00000358355   ⟹   ENSP00000351122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,835,478 - 129,881,828 (+)Ensembl
RefSeq Acc Id: ENST00000372429   ⟹   ENSP00000361506
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,835,458 - 129,881,828 (+)Ensembl
RefSeq Acc Id: ENST00000472108
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,879,373 - 129,881,828 (+)Ensembl
RefSeq Acc Id: ENST00000474895
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,868,322 - 129,878,437 (+)Ensembl
RefSeq Acc Id: ENST00000491053
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,834,698 - 129,852,636 (+)Ensembl
RefSeq Acc Id: ENST00000491731
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,868,367 - 129,870,152 (+)Ensembl
RefSeq Acc Id: ENST00000494971
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,835,417 - 129,858,547 (+)Ensembl
RefSeq Acc Id: ENST00000496927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,875,597 - 129,880,518 (+)Ensembl
RefSeq Acc Id: NM_001008563   ⟹   NP_001008563
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389129,835,458 - 129,881,828 (+)NCBI
GRCh379132,597,696 - 132,644,121 (+)NCBI
Build 369131,637,578 - 131,683,928 (+)NCBI Archive
Celera9103,248,726 - 103,295,216 (+)RGD
HuRef9102,196,523 - 102,243,074 (+)NCBI
CHM1_19132,746,720 - 132,793,117 (+)NCBI
T2T-CHM13v2.09142,040,029 - 142,086,556 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001110303   ⟹   NP_001103773
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389129,835,458 - 129,881,828 (+)NCBI
GRCh379132,597,696 - 132,644,121 (+)NCBI
Celera9103,248,726 - 103,295,216 (+)RGD
HuRef9102,196,523 - 102,243,074 (+)NCBI
CHM1_19132,746,720 - 132,793,117 (+)NCBI
T2T-CHM13v2.09142,040,029 - 142,086,556 (+)NCBI
Sequence:
RefSeq Acc Id: NM_006676   ⟹   NP_006667
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389129,835,458 - 129,881,828 (+)NCBI
GRCh379132,597,696 - 132,644,121 (+)NCBI
Build 369131,637,570 - 131,683,928 (+)NCBI Archive
Celera9103,248,726 - 103,295,216 (+)RGD
HuRef9102,196,523 - 102,243,074 (+)NCBI
CHM1_19132,746,720 - 132,793,117 (+)NCBI
T2T-CHM13v2.09142,040,029 - 142,086,556 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_006667   ⟸   NM_006676
- UniProtKB: Q9UQN8 (UniProtKB/Swiss-Prot),   Q96LG5 (UniProtKB/Swiss-Prot),   Q8IXQ1 (UniProtKB/Swiss-Prot),   Q541F1 (UniProtKB/Swiss-Prot),   Q9UQP0 (UniProtKB/Swiss-Prot),   Q9Y2K6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001103773   ⟸   NM_001110303
- UniProtKB: Q9UQN8 (UniProtKB/Swiss-Prot),   Q96LG5 (UniProtKB/Swiss-Prot),   Q8IXQ1 (UniProtKB/Swiss-Prot),   Q541F1 (UniProtKB/Swiss-Prot),   Q9UQP0 (UniProtKB/Swiss-Prot),   Q9Y2K6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001008563   ⟸   NM_001008563
- UniProtKB: Q9UQN8 (UniProtKB/Swiss-Prot),   Q96LG5 (UniProtKB/Swiss-Prot),   Q8IXQ1 (UniProtKB/Swiss-Prot),   Q541F1 (UniProtKB/Swiss-Prot),   Q9UQP0 (UniProtKB/Swiss-Prot),   Q9Y2K6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000361506   ⟸   ENST00000372429
RefSeq Acc Id: ENSP00000313811   ⟸   ENST00000315480
RefSeq Acc Id: ENSP00000351122   ⟸   ENST00000358355
Protein Domains
DUSP   USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y2K6-F1-model_v2 AlphaFold Q9Y2K6 1-914 view protein structure

Promoters
RGD ID:7216387
Promoter ID:EPDNEW_H13940
Type:initiation region
Name:USP20_1
Description:ubiquitin specific peptidase 20
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh389129,835,458 - 129,835,518EPDNEW
RGD ID:6808402
Promoter ID:HG_KWN:65271
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:NM_001008563,   NM_001110303,   NM_006676,   OTTHUMT00000054605,   OTTHUMT00000054606,   OTTHUMT00000054620,   OTTHUMT00000054621,   UC004BYO.1
Position:
Human AssemblyChrPosition (strand)Source
Build 369131,635,926 - 131,636,426 (+)MPROMDB
RGD ID:6808401
Promoter ID:HG_KWN:65273
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_2Hour,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000054607,   OTTHUMT00000054609
Position:
Human AssemblyChrPosition (strand)Source
Build 369131,669,521 - 131,670,792 (+)MPROMDB
RGD ID:6808405
Promoter ID:HG_KWN:65274
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_2Hour,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000054610
Position:
Human AssemblyChrPosition (strand)Source
Build 369131,676,911 - 131,678,187 (+)MPROMDB
RGD ID:6808426
Promoter ID:HG_KWN:65275
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000054608,   UC004BYU.1
Position:
Human AssemblyChrPosition (strand)Source
Build 369131,680,796 - 131,681,872 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12619 AgrOrtholog
COSMIC USP20 COSMIC
Ensembl Genes ENSG00000136878 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000315480 ENTREZGENE
  ENST00000315480.9 UniProtKB/Swiss-Prot
  ENST00000358355 ENTREZGENE
  ENST00000358355.5 UniProtKB/Swiss-Prot
  ENST00000372429 ENTREZGENE
  ENST00000372429.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.2230.10 UniProtKB/Swiss-Prot
  3.30.40.10 UniProtKB/Swiss-Prot
  Cysteine proteinases UniProtKB/Swiss-Prot
GTEx ENSG00000136878 GTEx
HGNC ID HGNC:12619 ENTREZGENE
Human Proteome Map USP20 Human Proteome Map
InterPro DUSP-like_sf UniProtKB/Swiss-Prot
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Pept_C19_DUSP UniProtKB/Swiss-Prot
  Peptidase_C19_UCH UniProtKB/Swiss-Prot
  USP_CS UniProtKB/Swiss-Prot
  USP_dom UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  Znf_UBP UniProtKB/Swiss-Prot
KEGG Report hsa:10868 UniProtKB/Swiss-Prot
NCBI Gene 10868 ENTREZGENE
OMIM 615143 OMIM
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 UniProtKB/Swiss-Prot
Pfam DUSP UniProtKB/Swiss-Prot
  UCH UniProtKB/Swiss-Prot
  zf-UBP UniProtKB/Swiss-Prot
PharmGKB PA37245 PharmGKB
PROSITE DUSP UniProtKB/Swiss-Prot
  USP_1 UniProtKB/Swiss-Prot
  USP_2 UniProtKB/Swiss-Prot
  USP_3 UniProtKB/Swiss-Prot
  ZF_UBP UniProtKB/Swiss-Prot
SMART DUSP UniProtKB/Swiss-Prot
  ZnF_UBP UniProtKB/Swiss-Prot
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
  SSF143791 UniProtKB/Swiss-Prot
  SSF54001 UniProtKB/Swiss-Prot
UniProt Q541F1 ENTREZGENE
  Q8IXQ1 ENTREZGENE
  Q96LG5 ENTREZGENE
  Q9UQN8 ENTREZGENE
  Q9UQP0 ENTREZGENE
  Q9Y2K6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q541F1 UniProtKB/Swiss-Prot
  Q8IXQ1 UniProtKB/Swiss-Prot
  Q96LG5 UniProtKB/Swiss-Prot
  Q9UQN8 UniProtKB/Swiss-Prot
  Q9UQP0 UniProtKB/Swiss-Prot