Ubl3 (ubiquitin-like 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ubl3 (ubiquitin-like 3) Rattus norvegicus
Analyze
Symbol: Ubl3
Name: ubiquitin-like 3
RGD ID: 1305431
Description: Predicted to be located in plasma membrane. Orthologous to human UBL3 (ubiquitin like 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363869; membrane-anchored ubiquitin-fold protein; MGC109350; MUB; ubiquitin-like protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,509,912 - 11,554,548 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1211,509,848 - 11,554,547 (+)EnsemblGRCr8
mRatBN7.2126,473,684 - 6,518,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,473,460 - 6,518,862 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx127,159,191 - 7,204,106 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,782,324 - 7,827,239 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,810,332 - 6,855,256 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0127,865,938 - 7,911,526 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,865,938 - 7,911,525 (+)Ensemblrn6Rnor6.0
Rnor_5.0129,953,322 - 9,997,648 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4127,019,485 - 7,063,818 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera128,222,177 - 8,266,763 (+)NCBICelera
RGSC_v3.1127,049,412 - 7,093,745 (+)NCBI
Cytogenetic Map12p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
DDE  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
etoposide  (ISO)
flutamide  (EXP)
folic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
lead(0)  (ISO)
mitomycin C  (ISO)
mitoxantrone  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nickel sulfate  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
senecionine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:19056867   PMID:23376485  


Genomics

Comparative Map Data
Ubl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,509,912 - 11,554,548 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1211,509,848 - 11,554,547 (+)EnsemblGRCr8
mRatBN7.2126,473,684 - 6,518,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,473,460 - 6,518,862 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx127,159,191 - 7,204,106 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,782,324 - 7,827,239 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,810,332 - 6,855,256 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0127,865,938 - 7,911,526 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,865,938 - 7,911,525 (+)Ensemblrn6Rnor6.0
Rnor_5.0129,953,322 - 9,997,648 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4127,019,485 - 7,063,818 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera128,222,177 - 8,266,763 (+)NCBICelera
RGSC_v3.1127,049,412 - 7,093,745 (+)NCBI
Cytogenetic Map12p11NCBI
UBL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381329,764,371 - 29,850,617 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1329,764,371 - 29,850,617 (-)Ensemblhg38GRCh38
GRCh371330,338,508 - 30,424,754 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361329,236,542 - 29,322,160 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341329,236,543 - 29,322,160NCBI
Celera1311,408,157 - 11,494,450 (-)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1311,152,796 - 11,238,892 (-)NCBIHuRef
CHM1_11330,306,077 - 30,392,355 (-)NCBICHM1_1
T2T-CHM13v2.01328,987,070 - 29,073,260 (-)NCBIT2T-CHM13v2.0
Ubl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,441,441 - 148,489,689 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,441,445 - 148,489,599 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385148,504,631 - 148,552,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,504,635 - 148,552,789 (-)Ensemblmm10GRCm38
MGSCv375149,316,207 - 149,364,364 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365148,814,996 - 148,862,982 (-)NCBIMGSCv36mm8
Celera5146,505,918 - 146,554,062 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map588.66NCBI
Ubl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543115,992,353 - 16,046,647 (+)Ensembl
ChiLan1.0NW_00495543115,991,559 - 16,046,647 (+)NCBIChiLan1.0ChiLan1.0
UBL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21429,351,149 - 29,437,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11320,457,885 - 20,544,192 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01311,044,601 - 11,130,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11329,082,854 - 29,169,035 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1329,082,851 - 29,169,061 (-)EnsemblpanPan2panpan1.1
UBL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12510,100,524 - 10,169,042 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,982,021 - 10,166,750 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2510,145,022 - 10,213,974 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02510,213,367 - 10,282,343 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2510,095,255 - 10,282,334 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12510,107,839 - 10,176,782 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02510,115,261 - 10,184,204 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02510,157,090 - 10,226,057 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ubl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945171,244,403 - 171,304,268 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647224,647,887 - 24,707,758 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647224,647,763 - 24,707,752 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1116,698,003 - 6,763,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,453,534 - 6,518,347 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.138,706,211 - 8,778,894 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl38,705,131 - 8,778,062 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605735,586,728 - 35,659,815 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247768,594,333 - 8,664,899 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247768,561,188 - 8,662,943 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ubl3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1165,296,113 - 5,342,537 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ubl3
282 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:219
Count of miRNA genes:146
Interacting mature miRNAs:186
Transcripts:ENSRNOT00000061229
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12111869600Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
AA924604  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,517,961 - 6,518,167 (+)MAPPERmRatBN7.2
Rnor_6.0127,911,157 - 7,911,362NCBIRnor6.0
Rnor_5.0129,997,279 - 9,997,484UniSTSRnor5.0
RGSC_v3.4127,063,449 - 7,063,654UniSTSRGSC3.4
Celera128,266,394 - 8,266,599UniSTS
RH 3.4 Map1272.6UniSTS
Cytogenetic Map12p11UniSTS
AU049526  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,481,849 - 6,482,021 (+)MAPPERmRatBN7.2
Rnor_6.0127,874,197 - 7,874,368NCBIRnor6.0
Rnor_5.0129,961,581 - 9,961,752UniSTSRnor5.0
RGSC_v3.4127,027,853 - 7,028,024UniSTSRGSC3.4
Celera128,230,345 - 8,230,516UniSTS
Cytogenetic Map12p11UniSTS
AU049955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,476,562 - 6,476,817 (+)MAPPERmRatBN7.2
mRatBN7.2126,476,614 - 6,476,817 (+)MAPPERmRatBN7.2
Rnor_6.0127,868,869 - 7,869,164NCBIRnor6.0
Rnor_6.0127,868,962 - 7,869,164NCBIRnor6.0
Rnor_5.0129,956,346 - 9,956,548UniSTSRnor5.0
Rnor_5.0129,956,253 - 9,956,548UniSTSRnor5.0
RGSC_v3.4127,022,416 - 7,022,820UniSTSRGSC3.4
Celera128,225,110 - 8,225,312UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000061229   ⟹   ENSRNOP00000057940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1211,509,892 - 11,554,547 (+)Ensembl
mRatBN7.2 Ensembl126,473,460 - 6,518,862 (+)Ensembl
Rnor_6.0 Ensembl127,865,938 - 7,911,525 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,514,354 - 6,518,550 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000167845   ⟹   ENSRNOP00000108801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1211,509,848 - 11,553,134 (+)Ensembl
RefSeq Acc Id: NM_001015030   ⟹   NP_001015030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,509,912 - 11,554,548 (+)NCBI
mRatBN7.2126,473,684 - 6,518,331 (+)NCBI
Rnor_6.0127,865,938 - 7,911,526 (+)NCBI
Rnor_5.0129,953,322 - 9,997,648 (+)NCBI
RGSC_v3.4127,019,485 - 7,063,818 (+)RGD
Celera128,222,177 - 8,266,763 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001015030 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91342 (Get FASTA)   NCBI Sequence Viewer  
  EDL89544 (Get FASTA)   NCBI Sequence Viewer  
  EDL89545 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000109338
GenBank Protein Q5BJT2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001015030   ⟸   NM_001015030
- UniProtKB: Q5BJT2 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057940   ⟸   ENSRNOT00000061229
Ensembl Acc Id: ENSRNOP00000108801   ⟸   ENSRNOT00000167845
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BJT2-F1-model_v2 AlphaFold Q5BJT2 1-117 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698394
Promoter ID:EPDNEW_R8919
Type:initiation region
Name:Ubl3_1
Description:ubiquitin-like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R8920  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0127,865,899 - 7,865,959EPDNEW
RGD ID:13698395
Promoter ID:EPDNEW_R8920
Type:single initiation site
Name:Ubl3_2
Description:ubiquitin-like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R8919  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0127,866,638 - 7,866,698EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305431 AgrOrtholog
BioCyc Gene G2FUF-20136 BioCyc
Ensembl Genes ENSRNOG00000000921 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000061229 ENTREZGENE
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7315459 IMAGE-MGC_LOAD
InterPro MUB UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
  UBL3-like UniProtKB/Swiss-Prot
  UBL3-like_ubiquitin_dom UniProtKB/Swiss-Prot
  UBL3_Ubl_met UniProtKB/Swiss-Prot
KEGG Report rno:363869 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109350 IMAGE-MGC_LOAD
NCBI Gene 363869 ENTREZGENE
PANTHER PTHR13169 UniProtKB/Swiss-Prot
  UBIQUITIN-LIKE PROTEIN 3 UniProtKB/Swiss-Prot
Pfam Rad60-SLD_2 UniProtKB/Swiss-Prot
PhenoGen Ubl3 PhenoGen
PIRSF MUB UniProtKB/Swiss-Prot
PROSITE UBIQUITIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000921 RatGTEx
RNAcentral URS00022AF64D RNACentral
  URS00022AFABC RNACentral
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot
UniProt A0ABK0M1R7_RAT UniProtKB/TrEMBL
  A6K187_RAT UniProtKB/TrEMBL
  Q5BJT2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ubl3  ubiquitin-like 3  Ubl3_predicted  ubiquitin-like 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ubl3_predicted  ubiquitin-like 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED