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Gene: Crocc (ciliary rootlet coiled-coil, rootletin) Rattus norvegicus

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Symbol:

Crocc

Name:

ciliary rootlet coiled-coil, rootletin

RGD ID:

1305364

Description:

Predicted to enable actin binding activity; kinesin binding activity; and structural molecule activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in several processes, including centriole-centriole cohesion; positive regulation of cilium assembly; and positive regulation of protein localization to cilium. Predicted to act upstream of or within several processes, including ciliary basal body organization; epithelial structure maintenance; and photoreceptor cell maintenance. Predicted to be located in several cellular components, including ciliary rootlet; photoreceptor inner segment; and subapical part of cell. Predicted to be active in centriole and centrosome. Orthologous to human CROCC (ciliary rootlet coiled-coil, rootletin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ciliary rootlet coiled-coil; LOC313663; rootletin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CROCC (ciliary rootlet coiled-coil, rootletin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Crocc (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Crocc (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CROCC (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CROCC (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Crocc (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CROCC (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CROCC (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Crocc (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Crocc (ciliary rootlet coiled-coil, rootletin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CROCC (ciliary rootlet coiled-coil, rootletin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Crocc (ciliary rootlet coiled-coil, rootletin)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	crocc2 (ciliary rootlet coiled-coil, rootletin family member 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Root	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Root	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lfi-1	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	lfi-1	Alliance	DIOPT (OMA\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	crocc	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	crocc	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	158,603,979 - 158,646,728 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	158,603,556 - 158,640,238 (-)	Ensembl				GRCr8
mRatBN7.2	5	153,320,962 - 153,363,734 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,320,962 - 153,363,578 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	156,009,395 - 156,052,063 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	157,782,666 - 157,825,334 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	157,771,850 - 157,814,519 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,540,453 - 159,583,194 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,540,421 - 159,583,049 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	163,252,706 - 163,295,206 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	159,875,186 - 159,896,308 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	151,685,993 - 151,728,367 (-)	NCBI		Celera
RGSC_v3.1	5	159,885,823 - 159,928,439 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

primary ovarian insufficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aconitine (EXP)

aflatoxin B1 (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

cisplatin (ISO)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

ethanol (ISO)

folic acid (ISO)

genistein (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dichloride (EXP)

methimazole (EXP)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP)

permethrin (EXP)

pirinixic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

centriole-centriole cohesion (IEA,ISO)

centrosome cycle (IEA,ISO)

ciliary basal body organization (ISO)

epithelial structure maintenance (ISO)

establishment of organelle localization (ISO)

intracellular protein localization (IEA,ISO)

photoreceptor cell maintenance (ISO)

positive regulation of cilium assembly (IEA,ISO)

positive regulation of protein localization to cilium (IEA,ISO)

Cellular Component

9+2 motile cilium (IEA,ISO)

centriole (IEA,ISO)

centrosome (IEA,ISO)

ciliary basal body (IEA,ISO)

ciliary rootlet (IEA,ISO)

photoreceptor inner segment (IEA,ISO)

subapical part of cell (IEA,ISO)

Molecular Function

actin binding (IEA,ISO)

kinesin binding (IEA,ISO)

protein binding (ISO)

structural constituent of cytoskeleton (IEA,ISO)

structural molecule activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12427867	PMID:15870283	PMID:16018997	PMID:16203858	PMID:16339073	PMID:18086858	PMID:19056867	PMID:21212183	PMID:21399614	PMID:23178122	PMID:23376485	PMID:24421332
PMID:24554434	PMID:27623382	PMID:29891944

Genomics

Comparative Map Data

Crocc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	158,603,979 - 158,646,728 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	158,603,556 - 158,640,238 (-)	Ensembl				GRCr8
mRatBN7.2	5	153,320,962 - 153,363,734 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,320,962 - 153,363,578 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	156,009,395 - 156,052,063 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	157,782,666 - 157,825,334 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	157,771,850 - 157,814,519 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,540,453 - 159,583,194 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,540,421 - 159,583,049 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	163,252,706 - 163,295,206 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	159,875,186 - 159,896,308 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	151,685,993 - 151,728,367 (-)	NCBI		Celera
RGSC_v3.1	5	159,885,823 - 159,928,439 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

CROCC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	16,914,085 - 16,972,964 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	16,740,273 - 16,972,964 (+)	Ensembl			hg38	GRCh38
GRCh37	1	17,248,426 - 17,299,459 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	17,121,032 - 17,172,061 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	16,993,750 - 17,044,766	NCBI
Celera	1	15,570,790 - 15,621,812 (+)	NCBI		Celera
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	15,492,380 - 15,543,555 (+)	NCBI		HuRef
CHM1_1	1	17,356,762 - 17,407,788 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	16,724,512 - 16,783,795 (+)	NCBI		T2T-CHM13v2.0

Crocc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	140,743,948 - 140,787,927 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	140,743,948 - 140,787,861 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	141,016,637 - 141,060,615 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	141,016,637 - 141,060,550 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	140,572,552 - 140,616,460 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	140,288,713 - 140,325,737 (-)	NCBI		MGSCv36	mm8
Celera	4	142,816,632 - 142,864,572 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	73.31	NCBI

Crocc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	1,833,665 - 1,874,116 (-)	Ensembl
ChiLan1.0	NW_004955527	1,833,348 - 1,874,211 (-)	NCBI	ChiLan1.0	ChiLan1.0

CROCC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	210,157,457 - 210,216,934 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	209,276,263 - 209,335,646 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	15,857,442 - 15,916,674 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	16,923,682 - 16,973,999 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	16,923,823 - 16,973,479 (+)	Ensembl			panPan2	panpan1.1

CROCC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	81,224,063 - 81,263,718 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	81,224,352 - 81,263,550 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	77,760,717 - 77,802,221 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	81,870,105 - 81,912,021 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	81,870,394 - 81,909,564 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	78,623,112 - 78,665,037 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	79,639,971 - 79,679,628 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	80,708,117 - 80,750,042 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Crocc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	38,091,115 - 38,135,143 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	3,918,919 - 3,958,229 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	3,918,237 - 3,958,635 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CROCC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	75,559,105 - 75,606,299 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	75,558,558 - 75,606,305 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	69,865,321 - 69,919,615 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CROCC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	115,618,768 - 115,676,786 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	115,619,307 - 115,668,112 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	414,824 - 501,772 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Crocc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	2,567,316 - 2,604,992 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	2,562,321 - 2,605,527 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Crocc
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	17,094,435 - 17,130,614 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Crocc
211 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	208
Count of miRNA genes:	123
Interacting mature miRNAs:	130
Transcripts:	ENSRNOT00000011114, ENSRNOT00000055839
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	156396728	167181764	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

RH140813

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	153,321,097 - 153,321,243 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	159,540,589 - 159,540,734	NCBI	Rnor6.0
Rnor_5.0	5	163,252,842 - 163,252,987	UniSTS	Rnor5.0
RGSC_v3.4	5	159,875,320 - 159,875,465	UniSTS	RGSC3.4
Celera	5	151,686,129 - 151,686,274	UniSTS
RH 3.4 Map	5	1051.4	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	88	59	6	352	188	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001415935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC141489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011114 ⟹ ENSRNOP00000011115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	153,320,962 - 153,357,426 (-)	Ensembl
Rnor_6.0 Ensembl	5	159,540,421 - 159,577,134 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000055839 ⟹ ENSRNOP00000052694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	158,603,979 - 158,637,925 (-)	Ensembl
mRatBN7.2 Ensembl	5	153,320,962 - 153,363,530 (-)	Ensembl
Rnor_6.0 Ensembl	5	159,540,453 - 159,583,049 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106944 ⟹ ENSRNOP00000079248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	158,604,127 - 158,640,238 (-)	Ensembl
mRatBN7.2 Ensembl	5	153,320,962 - 153,363,507 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107095 ⟹ ENSRNOP00000079103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	158,603,556 - 158,640,238 (-)	Ensembl
mRatBN7.2 Ensembl	5	153,320,962 - 153,363,578 (-)	Ensembl

RefSeq Acc Id:

NM_001415935 ⟹ NP_001402864

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,603,979 - 158,640,238 (-)	NCBI
mRatBN7.2	5	153,320,962 - 153,357,227 (-)	NCBI

RefSeq Acc Id:

XM_017593415 ⟹ XP_017448904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,604,375 - 158,646,476 (-)	NCBI
mRatBN7.2	5	153,320,962 - 153,363,486 (-)	NCBI
Rnor_6.0	5	159,540,453 - 159,578,674 (-)	NCBI

Sequence:

show sequence

GCCCAGGTCCTCTGCAAAAGCAGCCAGGTTCTTAACGGCTGCACCATCAGTCTCTCTTAATGCA
TCTAGGATTGGCCTCAAACACAAGAGTCTTCTGCCTCTACTTCCAAAGTGCTGCAGTTATAGAC
CTGAGCCACCGTGCCTGCTTCAATCCACACGTGTGATATAAGTAAACTATAGTGTTGAGAAAGG
CATTAGTTCCTCTGACCCAATTCCCTCTTAAAGGTCCCATCACCTCTCAACTCTTACCTTGGGA
ACCACATTTCACAAAGAGTTTTGGAAGGGACAAATGAATCGTGTTCTCCTGATCTAATTGTCTC
TGAGGCTCACTGCCTCCGTCTGCTAACCTGAGCCTAGTCCCAGAAGCTTCCAGCCTCCCTACAA
TCTTATCTGGGCCTAGAATGTTTTCAGCCTCTGGAACTTAGTGCTGAGTAAGCTCACTCTTTCT
AGCACTTTCTGAACTCTGGCTGGTTGGTCAACTGTTCTGACTCAAAATCTGTCTCCACACTGAC
TGGTTCAAACTGGCGGCTTTCAGCTTCTGACTGAATTGCTCTGCCTGGCCTCATCCTCACTCTG
GCAATCTGTTCTGATCTTGTGGCTCCTTCTCATTCTGTCTTCACCTATGTCTAGCTTGTTCTTT
CTCTGCAAATCTCTGTACAACTCTCCTGGTAAGACGTCCTCTCCTCCGCTCTCTCTGCACTGCT
CTCTCCTCAGTAGCCTCCACAGCAGCTTGGTGGCATCTGCCTTCTTGGCCACTCTTTCCACTCG
CAGTACCAATCCCTTAGTTGGGAAGGAGAGATCCAGTCTGGACTGAAGTTATGTAGGCAGCACC
TACCGCATCCTTGGGTCTGACTTGGATACGGCAGCAGGGCTTGAAGATCAAGGAGCTTGGCTTT
GCCATGTAGGCATTTTGGGGGACATCTGCTTGACTTAAGGGGGATGAGCTTCAGGCTTACACTG
CTCCATAGCATGTCACCTTGAATAGGTGAGACCTCCACCCCTCTGAGCCTCGTTTTGCTCATCC
GGAAATGGTAACCTAGAACCTAGGGACCTGGAGAGTAGAAGCCAGCGGGTAGTGCTAAAGTGAG
CGACTGTGAGATCAAGCTTGCCTTGTGTGCTTCTGAACCCCTTCTTCCCCACATCCAGCACGTT
TTCATTCCCACAAAGACCCTATTCTTGTCTACAAATAAGGAAACTGAGGCCAGGAGAGGAAATT
TATCCAGGGCTATACTGCTAACACAGGTCAGGCCAGCAACTCCAGGTCTTTACCCCTGTGCCAC
ACAGCCTCCTTGCTGCTGTGAGGGAAACTGCTCTCAGATTTGGGGACTCGGGGACTGTTCACTT
GTGTTTTCTAATGCATGAAGACAATATTTACCTAGCGTGCCCTGGGTGAACTGTTGTGTCTCTC
CCCCCCACCCCACCCCCTTGTGTGCTGTTGTTGACCGGCAGATGCTTTGCTCCCAGGAGCTCAG
TGGGAGCACCAATAGTACCAGCTCTTACACTGGATGCTGGGATACAGCCAGGGGCGGGGCTTGG
AGGGGATCAGTTCCCAGTCTTGTCTGAGCTCCTGCTTTCTTTGCTTCCAACCTGTAGTGCACAA
GCATCTCTCTGCCTAGCAACAGGCTGCAAATGAGTTCTGAGCAGACCATGTGAGCCCGTTCCGG
GTCAGGGGAGATGTACCATAAACTAGGGACTCTGGCCTTCCCCGCCTCAGGCAGCTGGGCTTGT
AAGCCTGCTGGACCCACAGCCGGGGGAGGGGGGATACTGTCCCTTCCGTTCACATTCTCCTGCT
CCTTGCTCTCTCCGCTCTGGAGTGCTGGTTGGGCCTCTTCTGCACCTCTGCTTCTGCTGCTCTT
CCCCTCCTCTCCCATCTGAATCTCTCCCCACCCCCTGCACGGTCACGTGGGGGCACCGACGGAT
TTAAGCTTAATCTGCTGGGCTGCTCAGCCTAGCATCCTGGCGTTGGTGTGTTAGTGCCTTGGTG
CGTGTCGCTGAGGTGACCTTCGACCTTCGTACTGTGAGGAGGGGGGCTGTGGAGTACCCACAGA
CCCCCCTCCATGAGCCTGGGGCTGGCAGAATCCCTGCAGGCCCAGCTGGCACTGGAGATTGTGA
TCCAGACACTGGAGAGTTGTGTCCTGGAACCAGACCAAGAGAAGAGCCTGAGTGTACAGAACCC
AGCCCAGGATTTCCAGGGAGCCAGCCTACCTGTCTGTGTTAGGGAGATCATCACCAGCAACCTC
TCCCAGCCTGAGACCCCAGCCCCACTCCAGGTCCCAGAGATGGCCTCACTGCTGTCCCTGCAGG
AGGAAAACCAGCTGCTGCAGCAGGAGCTGTCCCGGGTGGAGGACCTGCTGGCCCAGAGCCGTGC
AGAGCGTGATGAACTTGCCATCAAGTACAATGCCATCAATGAGAGGCTGGAGCAGGCTGTGCGG
CTGGAGACTGGGGAGCTGGAGGCACAGGAGCCCCGGGGTCTGGTGCGGCAGAGCGTGGAGCTGA
GGAGGCAGCTGCAGGAGGAGCAGGCCTCCTACCGGCGCAAGCTACAGGCCTACCAGGAGGGCCA
GCAGCGGCAGGCCCAGCTAGTGCAGCGGCTGCAGGCCAAGATCCTGCAGTACAAGAAGCAGTGC
TCAGAGATGGAGAAGCAGCTGCTGGAAAGGTCCACCGAGCTGGAGCAGCAGCGACTGAGGGACA
CAGAGCACAGCCAGGACCTGGACAGAGCTCTTCTGCGCCTAGAGGAAGAGCAGCAGAGAAGTGC
CAGCTTGGCCCAGGTGAACGACATGCTGAGAGAGCAGCTAGACCAGGCAAACCTGGCCAACCAG
ACTCTGAGCGAGGACATTTGCAAGGTGACCAGTGACTGGACCCGAAGCTGTAAGGAGCTGGAAC
AGAGGGAGGCAACATGGAGGCGTGAGGAGGAGTCCTTCAACGCCTACTTCAGCAGCGAGCACAG
CCGCCTGCTGCTCCTCTGGAGGCAGGTCATGGGGCTCCGAAGGATGGCCAGCGAGGTGAAGATG
GGCACCGAGAGGGACCTACTACAGCTAGGAGGAGAACTAGTCCGGACATCCCGGGCTGTCCAGG
AGGTGGGCCTAGGACTGAGTGCCAGCCTGCAGCGGGCTGAGAGCAGGGCTGAGGCGGCTCTGGA
GAAGCAAAAGCTGCTGCAGGCCCAACTGGAGGAGCAGCTACGGGCCAAGCTGCTCCGGGAGAAG
GACCTGGCCCAGCTTCAGGTGCAGAGTGACCTGGACAAGGCTGATCTCAGTGCCAGAGTGACAG
AGCTGGCCTTGTCTGTGGAACACCTTCAGAACCAGAACACAGAGAAGGACCAGGTCAACAGGAC
CCTCTCTGACAAGTTGGAGGCCCTGGAGTCTCTGCGGCTCCAGGAGCAGACAACCCTGGACACT
GAGGATGGAGAGGGGCTGCAGCAGACCTTGAGAGACCTGGCACAGGCTGCCCTCTCTGATACTG
AGAGTGGTGTCCAGCTCAGCAACTCAGAGCGCACTGCGGATACCTCAGACGGCAGCTTCCGCGG
CCTCTTTGGCCAGCGGACTCCAACTCCACCGCGGCACTCCTCCCCGGGTCGAGGTCGTTCTCCA
CGCCGAGGTCTGTCCCCAGCCTGCTCTGACTCCTCCACACTCACGCTGATCCACTCTGCCCTGC
ACAAGCGCCAGCTACAGGTCCAGGACATGCGTGGGCGCTATGAAGCCAGCCAAGATCTGTTGGG
TTCCGTGCGCAAGCAACTTAGTGACAGTGAGGGTGAGCGGCGTGGCCTGGAGGAGCAGCTACAG
CGCCTCCGGGACCAGACAGCAACCTCAGTCCAGGCCCAAGAGGATGCGCAGCGTGAGGCCCAGC
GCCTACGCAGTGCCAACGAGATCCTGAGCAGGGAGAAGGGCAACCTGAGCCACAGCCTGCAGGT
GGCCCAGCAGCAAGCTGAGGATCTGCGCCAGGAGCTGGAAAAGCTGCAGGCCGCCCAGGAGGAG
CTGAGGCGGCAGCACACCCAGCTGGAGGACCAGCAGGAGGACACGGTGCAGGAGGGCGCCCGGG
CCCGCCGCGAGCTAGAGCGCAGCCATCGGCAGCTGGAGCAGCTGGAAGTGAAGCGCTCGGGGCT
GACCAAGGAGCTGGTGGAGGTGCGGGAGGCACTGAGCTGCGCTGTACTGCAGAGGGATGTGCTG
CAGACAGAGAAGGCAGAGGTGGCTGAGGCGCTGACCAAGGCTGAGGCAGGCCGTGCGCAGCTGG
AGCTCTCTGTGACCAAGCTGAGGGCAGAGGAGGCTTCCCTGCGAGATTCCTTGTCCAAGATGAG
TGCCCTCAACGAGAGTCTCGCCCAGGACAAGCTGGAATTAAACCGCCTCATCGCCCAGCTAGAG
GAAGAAAAGGCGGCGCTCCTGGGCCGCCAGCAGCAGGCGGAGCACGCCACTTCGCTGGCTGTGG
AGAAGCAGGAACGGTTGGAGCAGCTGAGACTGGAGCAGGAGGTGGAGAGGCAGGGCCTGGAGGG
CTCCCTGTGTGTGGCTGAGCAGGCCCGGGAGGCGCTGGGGCAGCAGATCCTTGTATTGCGCAGC
GAACGCAGCCATCTGCAGGAGCAGGTGGCCCAGCTCTCCCGGCAGCTGAATGGACGGGACCAGG
AGTTGGATCAGGCCCTGCGGGAGTCCCAGCGGCAGGTGGAGGCCCTGGAGCGCGCTGCCCGGGA
GAAGGAGGCGATGGCCAAGGAACGGGCTGGCCTGGCTGTGCAGCTGGCAGCAGCCGAGCGTGAG
GGCCGGACCCTGTCAGAGGAGACCATTCGCCTGCGCTTGGAGAAGGAGGCCCTGGAGAGCAGCC
TGTTTGACGTGCAGAGGCAGCTGGCTCAGCTCGAGGCCCGCCGGGAGCAGCTAGAAGCGGACAG
TCAAGCCCTGCTGCTGGCCAAGGAAACTCTGACTGGGGAGCTGGCAGGCCTGCGGCAGCAGGTA
ACAGCCACTGAAGAGAAAGCGGCCTTGGACAAGGAGCTGATGACCCAGAAGCTAGTGCAAGCAG
AGCGGGAGACTCAGGCCTCTCTGCGGGAACAGCGGGCAGCCCATGAGGAGGATCTGCAGAGACT
CCAGCGGGAGAAGGAGGCTGCATGGCGGGAGCTTCAGGCAGAGCGGGCCCAGCTGCAGGGCCAG
TTACAGCAGGAGCGAGAGGAGCTGCTGGCCCGGATGGAGGCTGAGAAGGAGGAGCTGAGTGAGG
AGATCGCCGCGCTGCAGCAGGAGCGGGACGAGGGCCTGCTCCTGGCGGAGAGTGAGAAGCAGCA
GGCCTTGTCCTTGAAGGAGTCTGAGAAGACGGCACTGTCAGAGAAGTTGATGGGAACCCGGCAC
AGTCTGGCTGCCATCTCTCTGGAGATGGAACGGCAGAAGCGAGATGCCCAGAGCCGGCAGGAAC
AGGACCGGAACACAGTGAACGCCCTAACATCTGAACTTCGAGACCTCCGGGCTCAGCTGGAAGA
AGCCACAGCAGCCCATGCACAGCAGGTGAAAGAACTCCAGGAGCAGACGGGGAACCTGGGTCGG
CAGCGGGAGGCCTGCATGAGGGAGGCAGAAGAGCTGAGGACTCAGCTGCGCTTGTTGGAGGATA
CCCGTGATGGGCTGCGGCGGGAGCTGCTGGAGGCTCAGCGCAAGGTCCGGGACAGCCAGGACAG
CTCCGAGGCCCATCGCCAGGAGGCTAGTGAGCTGCGGCGCAGTCTGAGTGAGGGCACCAAGGAG
CGTGAGGCCCTGCGGCGTTCCAACGAGGAGCTGAGGACCGCTGTGAAGAAGGCAGAGAGCGAGC
GGATCAGCCTGAAGCTTGCCAATGAGGACAAGGAGCAGAAGCTGGCCCTCCTGGAAGAGGCTCG
AATGTCTGTCGCCAAGGAGGCTGGAGAGCTTCGGGCCTCACTGCAGGAAGTGGAGCGATCCCGG
CTGGAGGCTCGACGTGAGCTGCAGGAGCTTAGGCGACAGATGAAGACTCTGGACAGTGACAATG
GCCGACTGGGCCGTGAGCTGGCAGACCTGCAGAGCCGCTTGGCCCTGGGCGAGCGGACAGAGAA
GGAGAGCCGGCGAGAGGTCCTGGGCCTGCGGCAGAAGGTGCTGAAAGGCGAGAGCAGCCTGGAG
GCCTTGAAGCAGGAGCTCCAGGGTTCCCAGAGGAAGCTGCAGGAGCAAGAGGCTGAGTTCCGTG
CACGCGAACGAGGCCTGTTGGGCTCCCTGGAGGAGGCGCGTGGTGCCGAGAAGAAGCTTCTGGA
CTCTGCTCGCAGCCTGGAGCTAAGACTGGAGGGTGTGCGGGCAGAGACCTCAGAGCTGGGGCTG
CGGCTGAGTGCAGCTGAGGGCCGGGCCCAGGGCCTGGAGGTCGAGCTTGCCCGCGTGGAGGCGC
AGCGCCGGGTAGCCGAGGCCCAGCTGGGTGGCCTGCGCTCCGCCCTGCGCCGGGGCCTGGGCCT
GGGCCGAGTGTCCAGCTCCCCGGCTCGAGAGGCCCCTGCAGGAGGAAGTGGGGACGGACTCAGC
AGCCCCAGTCCTTTGGAATATAGCCCTCGGTCCCAGCCCCCGTCTCCAGGGCCTGTTGCCTCCC
CGGCACCTCCAGACTTGGACCCAGAAGCTGTGCGTGACGCCCTCCGAGATTTTCTGCAAGAGCT
GCGGAGTGCCCAGCGGGAGCGGGATGAACTTAGAGTCCAGACTAGCACCCTGAGTCAACAGCTG
GCTGAGATGGAGGCCGAGAGAGACCATGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGCAGTAG
CTGAGAGCGAGGAAGCCTGGCGCAGTGCAGACAGGCGGCTGAGCGGGGCCCAGGCCGAGCTGGC
ACTGCAGGAAGAGAGTGTGCGACGTAGCAGGCGGGAGTGCAGGGCCACGCTGGACCAGATGGCA
GTGCTGGAGAGGAGCCTGCAGGCCACCGAGAGCGAGCTCCGGGCCAGCCAGGAGAAGGTCAACA
AGATGAAGGCCACTGAGGTGAAGCTGGAGAGCGACAAGCGGCGACTGAAGGAGGTGCTGGATGC
GTCTGAGAGCCGCTCCATCAAACTGGAGCTGCAGCGGCGCGCTCTCGAGGGCGAGCTGCAGCGC
AGCCGCCTAGGCCTGGGGGACCGTGAGGCCCACGCTCAGGCCCTCCAGGATCGGGTGGACTCCC
TGCAGAGACAGGTGGCAGACAGTGAGGTGAAGGCAGGGACCTTACAGCTAACAGTGGAGCGGCT
CAGTGGGGCACTGGCCAAGGTGGAGGAGAGCGAGGGGACCCTGCGGAGCAAGGTGCAGAGCCTG
ACAGATGCCCTGGCCCAGAGCAGTGCCAGTCTCACCAGCAGTCAGGACAAGAATCTGTACCTAC
AGAAGGCCTTGAGTACCTGCGAACATGACCGCCAAGTGCTGCAGGAACGGCTGGACGCTGCCAG
ACAGGCACTGTCTGAAGCTCGAAGGCAAAGCAGCTCCCTGGGTGAGCAGGTGCAGACTCTGCGG
GGTGAGCTGGCCAACCTGGAGCTGCAGCGGGGCGATGCTGAAGGCCAGCTGCAGCAGCTGCAGC
AGGTGCTGCGGCAGCGGCAGGAAGGGGAGGCCGTGGCTTTGCGCTCCGTCCAGAAGCTACAGGA
GGAGCGGCGCCTGTTGCAGGAGCGCCTGGGCAGTCTGCAGCGAGCCCTGGCCCAGCTGGAAGCT
GAGAAACGTGAGCTGGAGCGGTCGGCACTGCAGCTGGACAAGGACCGTGTGGCACTCAGGAAGA
CACTGGACAAGGTGGAGCGGGAGAAGCTTCGAAGCCACGAGGACACACTGCGCTTGAATGCAGA
GAGGGGCCGCCTGGACCGCACACTCACAGGAGCTGAGCTGGACCTGGCTGAAGCCCAACAGCAG
ATCCAACATTTAGAGGCACAGGTGGTGGAAGTCCTGGAGCGGAACCACAGTCCTGTCCAGGTGG
AGGCAGATGAGCAGCACCTGGAGCTGCAACAGGAGGTTGAGCGCCTGCGCAGTGCCCAGGTACG
GACAGAGCGCACACTGGAGGCACGGGAGCGGGCCCACCGCCAGCGCGTGTCGGGGCTGGAGGAG
CAGGTACAAGGGCCTTTCCTGAGAGAAGGAGCTGGGATGGAATTGTGGGGCTGGAGGGAGGACT
GGTCATGCCCTCTACAACTTGAAAAGGGCCAAACAGATTGATGCTGGTGCCAGCTATGACTGGA
GTGATGCTACCTCACCTCAGGATCTCCTGGCCTAGAGCTCATTCTCTGGCTCTGAGCCATCGGA
CCATCTCCCTCCATGGCATGGTTCCCTTAGCAGCTCCAGCTCCAGGCTCTCGGAGGAACCTGGG
ATTCCGGGGCAAGAGCCCGAGAGATGACTCCTCCTGGCCAGTGAGGTCACTTCTGGCTGGCCTA
GTGCACGGCTTAGCTGCTTGGATAGGCCCAGCTTGGTCACTGACACTCCTGCAAGAGTCTGGCC
CAGCCAGATCTTCCCTGCCTCTGGTCCTCCTTAGCTCAGGGTCCTCTTCTGGACAGGAATGTGA
CAGCTTGGGAACAGGGCAGGGTTGGGAGTGGACACAGCTCTTGCTCTGCGGAGTGATGCCAGGC
AGAGCTGTTTCAGAGGCCAAGCCTCTGAAGTGATAAGGATGTCAAAGCCTGCAGACACCTAGCT
GTCGTGAGGAGCAAGTAAGAAGCTGATGCTTTCTGGCCCTCAGGGGACAGGTGACATGCCACTC
CTCCCCAACCCCCCACCCCTGCCCCTTCTTAGAAGTCAGATGGGGCCTGGCCCACTGGGCCCTT
CTCTTCTCCAGGTATCCACACTGAAGGCACAGCTGCATCAGGAGCGTCACCGGAGCTCAGCATC
CATGTCCCCACCCTCTGGCACCCCAGAGAAATGAGTCCCTTCCAGCCCATATCCTGAGCAGTCC
CTGGGCAGGAGAGAGGCCCTCTGTAGCATAGTCTGCCCAGGGCCTGGTCATCAGAGTGCTGGGT
GAGGGAGCTGGGGTGGCAGAGATGATGGCTGTGGTGACACCCACAGTGGCTTCTCAGAGCGACT
GCAGCACCTGTACTACCCTGGCCTCTCAAGAAGAGTCTCTTGATGGTCCAAGGCTCTCCTGCTT
GGCGGAGCCAGCCAGGCATCAGGGAGGGAGAGCACTTGTTTCCGCCCGCCAGCAGCAGAGCAAA
GGTTCCCCAGACAGGGTACCTGAGCCAGAGCACCCGGCTTCTCCTTAGCATCCTCGTCAGAGTC
GGAAGCTCCCTCGTGAGCTTAGAGCCCTTGTATTTTTGTATCTTTTTATAATGTTCACTGTGGA
GAACATGTGCTTTTTGTAACATGACCTGTTTTCTAGAA

hide sequence

RefSeq Acc Id:

XM_039110073 ⟹ XP_038966001

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,604,375 - 158,646,725 (-)	NCBI
mRatBN7.2	5	153,320,962 - 153,363,734 (-)	NCBI

RefSeq Acc Id:

XM_063287805 ⟹ XP_063143875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,604,375 - 158,646,727 (-)	NCBI

RefSeq Acc Id:

XM_063287806 ⟹ XP_063143876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,603,979 - 158,646,725 (-)	NCBI

RefSeq Acc Id:

XM_063287807 ⟹ XP_063143877

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,603,979 - 158,646,726 (-)	NCBI

RefSeq Acc Id:

XM_063287809 ⟹ XP_063143879

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,603,979 - 158,646,725 (-)	NCBI

RefSeq Acc Id:

XM_063287810 ⟹ XP_063143880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,603,979 - 158,646,726 (-)	NCBI

RefSeq Acc Id:

XM_063287811 ⟹ XP_063143881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,604,375 - 158,646,725 (-)	NCBI

RefSeq Acc Id:

XM_063287812 ⟹ XP_063143882

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,604,375 - 158,646,724 (-)	NCBI

RefSeq Acc Id:

XM_063287813 ⟹ XP_063143883

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,607,549 - 158,646,728 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001402864	(Get FASTA)	NCBI Sequence Viewer
	XP_017448904	(Get FASTA)	NCBI Sequence Viewer
	XP_038966001	(Get FASTA)	NCBI Sequence Viewer
	XP_063143875	(Get FASTA)	NCBI Sequence Viewer
	XP_063143876	(Get FASTA)	NCBI Sequence Viewer
	XP_063143877	(Get FASTA)	NCBI Sequence Viewer
	XP_063143879	(Get FASTA)	NCBI Sequence Viewer
	XP_063143880	(Get FASTA)	NCBI Sequence Viewer
	XP_063143881	(Get FASTA)	NCBI Sequence Viewer
	XP_063143882	(Get FASTA)	NCBI Sequence Viewer
	XP_063143883	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80960	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052694
	ENSRNOP00000052694.3
	ENSRNOP00000079103
	ENSRNOP00000079103.2
	ENSRNOP00000079248
	ENSRNOP00000079248.2

RefSeq Acc Id:	XP_017448904 ⟸ XM_017593415
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZM97 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLGLAESLQAQLALEIVIQTLESCVLEPDQEKSLSVQNPAQDFQGASLPVCVREIITSNLSQP ETPAPLQVPEMASLLSLQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAINERLEQAVRLET GELEAQEPRGLVRQSVELRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQAKILQYKKQCSEM EKQLLERSTELEQQRLRDTEHSQDLDRALLRLEEEQQRSASLAQVNDMLREQLDQANLANQTLS EDICKVTSDWTRSCKELEQREATWRREEESFNAYFSSEHSRLLLLWRQVMGLRRMASEVKMGTE RDLLQLGGELVRTSRAVQEVGLGLSASLQRAESRAEAALEKQKLLQAQLEEQLRAKLLREKDLA QLQVQSDLDKADLSARVTELALSVEHLQNQNTEKDQVNRTLSDKLEALESLRLQEQTTLDTEDG EGLQQTLRDLAQAALSDTESGVQLSNSERTADTSDGSFRGLFGQRTPTPPRHSSPGRGRSPRRG LSPACSDSSTLTLIHSALHKRQLQVQDMRGRYEASQDLLGSVRKQLSDSEGERRGLEEQLQRLR DQTATSVQAQEDAQREAQRLRSANEILSREKGNLSHSLQVAQQQAEDLRQELEKLQAAQEELRR QHTQLEDQQEDTVQEGARARRELERSHRQLEQLEVKRSGLTKELVEVREALSCAVLQRDVLQTE KAEVAEALTKAEAGRAQLELSVTKLRAEEASLRDSLSKMSALNESLAQDKLELNRLIAQLEEEK AALLGRQQQAEHATSLAVEKQERLEQLRLEQEVERQGLEGSLCVAEQAREALGQQILVLRSERS HLQEQVAQLSRQLNGRDQELDQALRESQRQVEALERAAREKEAMAKERAGLAVQLAAAEREGRT LSEETIRLRLEKEALESSLFDVQRQLAQLEARREQLEADSQALLLAKETLTGELAGLRQQVTAT EEKAALDKELMTQKLVQAERETQASLREQRAAHEEDLQRLQREKEAAWRELQAERAQLQGQLQQ EREELLARMEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLA AISLEMERQKRDAQSRQEQDRNTVNALTSELRDLRAQLEEATAAHAQQVKELQEQTGNLGRQRE ACMREAEELRTQLRLLEDTRDGLRRELLEAQRKVRDSQDSSEAHRQEASELRRSLSEGTKEREA LRRSNEELRTAVKKAESERISLKLANEDKEQKLALLEEARMSVAKEAGELRASLQEVERSRLEA RRELQELRRQMKTLDSDNGRLGRELADLQSRLALGERTEKESRREVLGLRQKVLKGESSLEALK QELQGSQRKLQEQEAEFRARERGLLGSLEEARGAEKKLLDSARSLELRLEGVRAETSELGLRLS AAEGRAQGLEVELARVEAQRRVAEAQLGGLRSALRRGLGLGRVSSSPAREAPAGGSGDGLSSPS PLEYSPRSQPPSPGPVASPAPPDLDPEAVRDALRDFLQELRSAQRERDELRVQTSTLSQQLAEM EAERDHAASRAKQLQKAVAESEEAWRSADRRLSGAQAELALQEESVRRSRRECRATLDQMAVLE RSLQATESELRASQEKVNKMKATEVKLESDKRRLKEVLDASESRSIKLELQRRALEGELQRSRL GLGDREAHAQALQDRVDSLQRQVADSEVKAGTLQLTVERLSGALAKVEESEGTLRSKVQSLTDA LAQSSASLTSSQDKNLYLQKALSTCEHDRQVLQERLDAARQALSEARRQSSSLGEQVQTLRGEL ANLELQRGDAEGQLQQLQQVLRQRQEGEAVALRSVQKLQEERRLLQERLGSLQRALAQLEAEKR ELERSALQLDKDRVALRKTLDKVEREKLRSHEDTLRLNAERGRLDRTLTGAELDLAEAQQQIQH LEAQVVEVLERNHSPVQVEADEQHLELQQEVERLRSAQVRTERTLEARERAHRQRVSGLEEQVQ GPFLREGAGMELWGWREDWSCPLQLEKGQTD hide sequence

Ensembl Acc Id:

ENSRNOP00000052694 ⟸ ENSRNOT00000055839

Ensembl Acc Id:

ENSRNOP00000011115 ⟸ ENSRNOT00000011114

RefSeq Acc Id:	XP_038966001 ⟸ XM_039110073
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZM97 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000079248 ⟸ ENSRNOT00000106944

Ensembl Acc Id:

ENSRNOP00000079103 ⟸ ENSRNOT00000107095

RefSeq Acc Id:	NP_001402864 ⟸ NM_001415935
- UniProtKB:	F1M6Q2 (UniProtKB/TrEMBL), A0A8I5ZM97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143880 ⟸ XM_063287810
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZN13 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143877 ⟸ XM_063287807
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZM97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143879 ⟸ XM_063287809
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZN13 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143876 ⟸ XM_063287806
- Peptide Label:	isoform X3
- UniProtKB:	F1M6Q2 (UniProtKB/TrEMBL), A0A8I5ZM97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143875 ⟸ XM_063287805
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZM97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143881 ⟸ XM_063287811
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZM97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143882 ⟸ XM_063287812
- Peptide Label:	isoform X8
- UniProtKB:	D4AD05 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143883 ⟸ XM_063287813
- Peptide Label:	isoform X9

Protein Domains

Rootletin-like coiled-coil

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M6Q2-F1-model_v2	AlphaFold	F1M6Q2	1-1986	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305364	AgrOrtholog
BioCyc Gene	G2FUF-39372	BioCyc
Ensembl Genes	ENSRNOG00000008334	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055839	ENTREZGENE
	ENSRNOT00000055839.6	UniProtKB/TrEMBL
	ENSRNOT00000106944	ENTREZGENE
	ENSRNOT00000106944.2	UniProtKB/TrEMBL
	ENSRNOT00000107095	ENTREZGENE
	ENSRNOT00000107095.2	UniProtKB/TrEMBL
InterPro	Rootletin-like_CC	UniProtKB/TrEMBL
NCBI Gene	313663	ENTREZGENE
PANTHER	CENTROSOMAL PROTEIN 2	UniProtKB/TrEMBL
	CENTROSOME-ASSOCIATED PROTEIN CEP250 ISOFORM X1	UniProtKB/TrEMBL
Pfam	Rootletin	UniProtKB/TrEMBL
PhenoGen	Crocc	PhenoGen
RatGTEx	ENSRNOG00000008334	RatGTEx
Superfamily-SCOP	Tropomyosin	UniProtKB/TrEMBL
UniProt	A0A8I5ZM97	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZN13	ENTREZGENE, UniProtKB/TrEMBL
	D4AD05	ENTREZGENE, UniProtKB/TrEMBL
	F1M6Q2	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Crocc	ciliary rootlet coiled-coil, rootletin	Crocc_predicted	ciliary rootlet coiled-coil, rootletin (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Crocc_predicted	ciliary rootlet coiled-coil, rootletin (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar