Col4a4 (collagen type IV alpha 4 chain) - Rat Genome Database

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Gene: Col4a4 (collagen type IV alpha 4 chain) Rattus norvegicus
Analyze
Symbol: Col4a4
Name: collagen type IV alpha 4 chain
RGD ID: 1305355
Description: Predicted to enable molecular adaptor activity. Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in glomerular basement membrane development. Predicted to be located in basement membrane. Predicted to be part of collagen type IV trimer. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in autosomal recessive Alport syndrome; benign familial hematuria; and end stage renal disease. Orthologous to human COL4A4 (collagen type IV alpha 4 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: collagen, type IV, alpha 4; LOC301562; MGC105542; procollagen, type IV, alpha 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8991,281,324 - 91,323,577 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl991,203,670 - 91,323,577 (-)EnsemblGRCr8
mRatBN7.2983,833,173 - 83,875,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl983,755,515 - 83,875,876 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx992,263,426 - 92,305,686 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0997,391,909 - 97,434,165 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0995,774,860 - 95,817,110 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd994,887,869 - 94,930,118 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive990,708,109 - 90,750,364 (-)NCBILyon_Normotensive
Lyon_Hypertensive990,855,593 - 90,897,842 (-)NCBILyon_Hypertensive
F344_StmMcwi992,854,782 - 92,897,037 (-)NCBIF344_StmMcwi
Rnor_6.0988,314,763 - 88,357,183 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,232,455 - 88,357,182 (-)Ensemblrn6Rnor6.0
Rnor_5.0988,062,426 - 88,104,120 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4981,866,835 - 81,910,088 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera981,276,510 - 81,318,343 (-)NCBICelera
RGSC_v3.1982,050,254 - 82,093,507 (-)NCBI
Cytogenetic Map9q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Autosomal dominant Alport syndrome: molecular analysis of the COL4A4 gene and clinical outcome. Marcocci E, etal., Nephrol Dial Transplant. 2009 May;24(5):1464-71. doi: 10.1093/ndt/gfn681. Epub 2009 Jan 7.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Clinico-pathological correlations in 127 patients in 11 large pedigrees, segregating one of three heterozygous mutations in the COL4A3/ COL4A4 genes associated with familial haematuria and significant late progression to proteinuria and chronic kidney disease from focal segmental glomerulosclerosis. Pierides A, etal., Nephrol Dial Transplant. 2009 Sep;24(9):2721-9. doi: 10.1093/ndt/gfp158. Epub 2009 Apr 8.
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:2211832   PMID:7523402   PMID:7962065   PMID:9264260   PMID:10534397   PMID:11732842   PMID:12477932   PMID:17942953   PMID:19275937   PMID:19675380  


Genomics

Comparative Map Data
Col4a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8991,281,324 - 91,323,577 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl991,203,670 - 91,323,577 (-)EnsemblGRCr8
mRatBN7.2983,833,173 - 83,875,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl983,755,515 - 83,875,876 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx992,263,426 - 92,305,686 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0997,391,909 - 97,434,165 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0995,774,860 - 95,817,110 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd994,887,869 - 94,930,118 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive990,708,109 - 90,750,364 (-)NCBILyon_Normotensive
Lyon_Hypertensive990,855,593 - 90,897,842 (-)NCBILyon_Hypertensive
F344_StmMcwi992,854,782 - 92,897,037 (-)NCBIF344_StmMcwi
Rnor_6.0988,314,763 - 88,357,183 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,232,455 - 88,357,182 (-)Ensemblrn6Rnor6.0
Rnor_5.0988,062,426 - 88,104,120 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4981,866,835 - 81,910,088 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera981,276,510 - 81,318,343 (-)NCBICelera
RGSC_v3.1982,050,254 - 82,093,507 (-)NCBI
Cytogenetic Map9q34NCBI
COL4A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382226,967,360 - 227,164,488 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2227,002,714 - 227,164,453 (-)Ensemblhg38GRCh38
GRCh372227,867,430 - 228,028,921 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362227,575,671 - 227,737,519 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342227,695,432 - 227,854,780NCBI
Celera2221,636,952 - 221,798,798 (-)NCBICelera
Cytogenetic Map2q36.3NCBI
HuRef2219,710,854 - 219,872,782 (-)NCBIHuRef
CHM1_12227,873,296 - 228,035,468 (-)NCBICHM1_1
T2T-CHM13v2.02227,431,447 - 227,647,252 (-)NCBIT2T-CHM13v2.0
Col4a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39182,426,140 - 82,564,570 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl182,426,144 - 82,564,570 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38182,448,419 - 82,587,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl182,448,423 - 82,586,849 (-)Ensemblmm10GRCm38
MGSCv37182,447,298 - 82,583,424 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36182,331,582 - 82,465,816 (-)NCBIMGSCv36mm8
Celera182,519,390 - 82,655,931 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map142.2NCBI
Col4a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554537,420,203 - 7,520,200 (+)Ensembl
ChiLan1.0NW_0049554537,405,167 - 7,524,038 (+)NCBIChiLan1.0ChiLan1.0
COL4A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213129,621,177 - 129,784,608 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B129,641,578 - 129,799,578 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B114,227,135 - 114,410,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B233,061,067 - 233,222,541 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B233,065,678 - 233,205,892 (-)EnsemblpanPan2panpan1.1
COL4A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12539,849,680 - 39,976,035 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2539,854,388 - 39,976,189 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2540,472,320 - 40,576,418 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02540,097,773 - 40,223,035 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2540,102,484 - 40,205,769 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12540,038,958 - 40,143,270 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02539,873,785 - 39,983,389 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02540,052,828 - 40,157,117 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Col4a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303182,032,869 - 182,171,485 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365258,795,436 - 8,899,149 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365258,788,753 - 8,899,671 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL4A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15128,476,257 - 128,595,477 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115128,472,228 - 128,612,302 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215142,283,500 - 142,421,620 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL4A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110113,028,552 - 113,183,240 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10113,028,552 - 113,165,958 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604086,269,741 - 86,423,511 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col4a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248431,364,674 - 1,486,250 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248431,364,674 - 1,486,813 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Col4a4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14155,331,751 - 155,450,325 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Col4a4
249 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:68
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000041176
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)98672213292642305Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)99062451792642305Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat

Markers in Region
D9Rat144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2983,851,531 - 83,851,658 (+)MAPPERmRatBN7.2
Rnor_6.0988,333,183 - 88,333,309NCBIRnor6.0
Rnor_5.0988,080,598 - 88,080,724UniSTSRnor5.0
RGSC_v3.4981,885,455 - 81,885,804RGDRGSC3.4
RGSC_v3.4981,885,484 - 81,885,610UniSTSRGSC3.4
Celera981,294,966 - 81,295,092UniSTS
RGSC_v3.1982,068,874 - 82,069,223RGD
FHH x ACI Map956.65RGD
FHH x ACI Map956.65UniSTS
Cytogenetic Map9q34UniSTS
RH134744  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2983,833,284 - 83,833,467 (+)MAPPERmRatBN7.2
Rnor_6.0988,314,875 - 88,315,057NCBIRnor6.0
Rnor_5.0988,062,538 - 88,062,720UniSTSRnor5.0
RGSC_v3.4981,866,947 - 81,867,129UniSTSRGSC3.4
Celera981,276,622 - 81,276,804UniSTS
Cytogenetic Map9q34UniSTS
AU048826  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2983,844,296 - 83,844,488 (+)MAPPERmRatBN7.2
Rnor_6.0988,325,843 - 88,326,034NCBIRnor6.0
Rnor_5.0988,073,258 - 88,073,449UniSTSRnor5.0
RGSC_v3.4981,878,249 - 81,878,440UniSTSRGSC3.4
Celera981,287,731 - 81,287,922UniSTS
Cytogenetic Map9q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 66 159 91 90 59 56 59 6 316 154 9 131 80 91 31 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000041176   ⟹   ENSRNOP00000039933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl988,314,784 - 88,357,182 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl991,203,670 - 91,323,577 (-)Ensembl
mRatBN7.2 Ensembl983,755,779 - 83,875,876 (-)Ensembl
Rnor_6.0 Ensembl988,236,749 - 88,343,609 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076472   ⟹   ENSRNOP00000067935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl988,232,455 - 88,256,115 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl988,280,149 - 88,284,764 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077503   ⟹   ENSRNOP00000074055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl991,203,670 - 91,323,577 (-)Ensembl
mRatBN7.2 Ensembl983,755,515 - 83,875,436 (-)Ensembl
Rnor_6.0 Ensembl988,237,089 - 88,356,716 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111693   ⟹   ENSRNOP00000084905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl983,755,515 - 83,773,068 (-)Ensembl
RefSeq Acc Id: NM_001008332   ⟹   NP_001008333
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8991,281,324 - 91,323,577 (-)NCBI
mRatBN7.2983,833,173 - 83,875,436 (-)NCBI
Dahl_SR_JrHsd994,887,869 - 94,930,118 (-)NCBI
Lyon_Normotensive990,708,109 - 90,750,364 (-)NCBI
Lyon_Hypertensive990,855,593 - 90,897,842 (-)NCBI
F344_StmMcwi992,854,782 - 92,897,037 (-)NCBI
Rnor_6.0988,314,763 - 88,357,183 (-)NCBI
Rnor_5.0988,062,426 - 88,104,120 (-)NCBI
RGSC_v3.4981,866,835 - 81,910,088 (-)RGD
Celera981,276,510 - 81,318,343 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001008333 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86403 (Get FASTA)   NCBI Sequence Viewer  
  EDL75508 (Get FASTA)   NCBI Sequence Viewer  
  EDL75509 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074055.2
  ENSRNOP00000090067.2
RefSeq Acc Id: NP_001008333   ⟸   NM_001008332
- UniProtKB: Q5U1X9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039933   ⟸   ENSRNOT00000041176
Ensembl Acc Id: ENSRNOP00000074055   ⟸   ENSRNOT00000077503
Ensembl Acc Id: ENSRNOP00000067935   ⟸   ENSRNOT00000076472
Ensembl Acc Id: ENSRNOP00000084905   ⟸   ENSRNOT00000111693
Protein Domains
Collagen IV NC1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K742-F1-model_v2 AlphaFold A0A0G2K742 1-1682 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696798
Promoter ID:EPDNEW_R7323
Type:initiation region
Name:Col4a4_1
Description:collagen type IV alpha 4 chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0988,357,241 - 88,357,301EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305355 AgrOrtholog
BioCyc Gene G2FUF-26980 BioCyc
Ensembl Genes ENSRNOG00000014851 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075968.3 UniProtKB/TrEMBL
  ENSRNOT00000077503.3 UniProtKB/TrEMBL
Gene3D-CATH 2.170.240.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7304199 IMAGE-MGC_LOAD
InterPro C-type_lectin_fold UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  Collagen_IV_NC_sf UniProtKB/TrEMBL
  Collagen_Structural_Proteins UniProtKB/TrEMBL
  Collagen_superfamily UniProtKB/TrEMBL
  Collagen_VI_NC UniProtKB/TrEMBL
KEGG Report rno:301562 UniProtKB/TrEMBL
MGC_CLONE MGC:105542 IMAGE-MGC_LOAD
NCBI Gene 301562 ENTREZGENE
PANTHER COLLAGEN UniProtKB/TrEMBL
  COLLAGEN ALPHA UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(XXIII) CHAIN-LIKE ISOFORM X2 UniProtKB/TrEMBL
  COLLAGEN TRIPLE HELIX REPEAT UniProtKB/TrEMBL
  CUTICLE COLLAGEN DPY-2 UniProtKB/TrEMBL
  SI:CH211-266K2.1 UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  PF01413 UniProtKB/TrEMBL
PhenoGen Col4a4 PhenoGen
PROSITE NC1_IV UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014851 RatGTEx
SMART SM00111 UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A0G2K742_RAT UniProtKB/TrEMBL
  A0A8I6A9Z5_RAT UniProtKB/TrEMBL
  A6JWA0_RAT UniProtKB/TrEMBL
  A6JWA1_RAT UniProtKB/TrEMBL
  Q5U1X9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-01 Col4a4  collagen type IV alpha 4 chain  Col4a4  collagen, type IV, alpha 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-01-29 Col4a4  collagen, type IV, alpha 4  Col4a4  procollagen, type IV, alpha 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Col4a4  procollagen, type IV, alpha 4  Col4a4_predicted  procollagen, type IV, alpha 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Col4a4_predicted  procollagen, type IV, alpha 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED