Asb7 (ankyrin repeat and SOCS box-containing 7) - Rat Genome Database

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Gene: Asb7 (ankyrin repeat and SOCS box-containing 7) Rattus norvegicus
Analyze
Symbol: Asb7
Name: ankyrin repeat and SOCS box-containing 7
RGD ID: 1305154
Description: Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of heterochromatin organization. Predicted to be part of Cul5-RING ubiquitin ligase complex. Predicted to be active in heterochromatin. Orthologous to human ASB7 (ankyrin repeat and SOCS box containing 7); INTERACTS WITH azoxystrobin; bisphenol A; chlorpyrifos.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ankyrin repeat and SOCS box protein 7; ankyrin repeat and SOCS box-containing protein 7; LOC102549815; LOC365277; uncharacterized LOC102549815
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,621,462 - 129,677,788 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1129,635,330 - 129,677,505 (-)EnsemblGRCr8
mRatBN7.21120,222,835 - 120,267,411 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,222,745 - 120,267,282 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1128,223,699 - 128,265,296 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,395,133 - 135,436,728 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,199,488 - 128,240,900 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1128,602,331 - 128,643,741 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1133,557,802 - 133,599,212 (-)NCBILyon_Normotensive
Lyon_Hypertensive1130,200,564 - 130,241,974 (-)NCBILyon_Hypertensive
F344_StmMcwi1128,785,254 - 128,826,822 (-)NCBIF344_StmMcwi
Rnor_6.01127,545,671 - 127,599,257 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,554,785 - 127,599,257 (-)Ensemblrn6Rnor6.0
Rnor_5.01128,623,601 - 128,674,470 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41121,091,586 - 121,142,773 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1112,419,585 - 112,470,051 (-)NCBICelera
RGSC_v3.11121,179,169 - 121,210,981 (-)NCBI
Cytogenetic Map1q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Asb7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,621,462 - 129,677,788 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1129,635,330 - 129,677,505 (-)EnsemblGRCr8
mRatBN7.21120,222,835 - 120,267,411 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,222,745 - 120,267,282 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1128,223,699 - 128,265,296 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,395,133 - 135,436,728 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,199,488 - 128,240,900 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1128,602,331 - 128,643,741 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1133,557,802 - 133,599,212 (-)NCBILyon_Normotensive
Lyon_Hypertensive1130,200,564 - 130,241,974 (-)NCBILyon_Hypertensive
F344_StmMcwi1128,785,254 - 128,826,822 (-)NCBIF344_StmMcwi
Rnor_6.01127,545,671 - 127,599,257 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,554,785 - 127,599,257 (-)Ensemblrn6Rnor6.0
Rnor_5.01128,623,601 - 128,674,470 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41121,091,586 - 121,142,773 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1112,419,585 - 112,470,051 (-)NCBICelera
RGSC_v3.11121,179,169 - 121,210,981 (-)NCBI
Cytogenetic Map1q22NCBI
ASB7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815100,602,589 - 100,651,701 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15100,602,547 - 100,651,703 (+)Ensemblhg38GRCh38
GRCh3715101,142,794 - 101,191,906 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361598,960,358 - 99,007,174 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1577,556,003 - 77,605,160 (+)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1577,264,124 - 77,313,303 (+)NCBIHuRef
CHM1_115100,983,741 - 101,032,887 (+)NCBICHM1_1
T2T-CHM13v2.01598,357,248 - 98,406,286 (+)NCBIT2T-CHM13v2.0
Asb7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39766,294,220 - 66,339,601 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl766,294,313 - 66,339,344 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38766,644,565 - 66,689,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl766,644,565 - 66,689,596 (-)Ensemblmm10GRCm38
MGSCv37773,789,451 - 73,834,447 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36766,526,736 - 66,568,424 (-)NCBIMGSCv36mm8
Celera764,094,087 - 64,139,864 (-)NCBICelera
Cytogenetic Map7CNCBI
cM Map736.03NCBI
Asb7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541627,610,011 - 27,649,356 (+)Ensembl
ChiLan1.0NW_00495541627,610,011 - 27,649,186 (+)NCBIChiLan1.0ChiLan1.0
ASB7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21690,194,669 - 90,243,989 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11593,894,996 - 93,944,336 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01579,328,868 - 79,378,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11598,616,797 - 98,734,650 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1598,616,797 - 98,666,094 (+)EnsemblpanPan2panpan1.1
ASB7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1340,365,515 - 40,415,345 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl340,320,391 - 40,414,671 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha343,056,940 - 43,106,762 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0340,765,981 - 40,815,813 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl340,765,986 - 40,815,776 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1340,299,788 - 40,349,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0340,530,394 - 40,580,210 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0340,737,640 - 40,787,467 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Asb7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640143,128,581 - 143,165,827 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364833,168,137 - 3,205,880 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364833,165,577 - 3,205,878 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASB7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1139,191,572 - 139,240,185 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11139,191,407 - 139,240,206 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21155,395,977 - 155,444,625 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASB7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,065,756 - 19,115,156 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,075,293 - 19,115,216 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605927,428,775 - 27,478,213 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asb7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247684,083,190 - 4,122,705 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247684,083,278 - 4,122,706 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Asb7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12133,678,639 - 133,723,111 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Asb7
479 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:214
Count of miRNA genes:146
Interacting mature miRNAs:169
Transcripts:ENSRNOT00000018436
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611176289080Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
631684Bp117Blood pressure QTL 1178.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1120082258165082258Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1112521556157521556Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1128019551173019551Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)1108680016153680016Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611131244255Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1127329268206393015Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1109493780193400781Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1112521556157521556Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1124975316152612788Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1111949780160574007Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1116099376191260518Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1111404407142582336Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1129182274174182274Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018436   ⟹   ENSRNOP00000018436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1129,643,204 - 129,677,505 (-)Ensembl
mRatBN7.2 Ensembl1120,222,745 - 120,267,282 (-)Ensembl
Rnor_6.0 Ensembl1127,557,842 - 127,599,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084082   ⟹   ENSRNOP00000072402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1127,554,785 - 127,589,660 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095353   ⟹   ENSRNOP00000080514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1129,635,330 - 129,677,505 (-)Ensembl
mRatBN7.2 Ensembl1120,224,795 - 120,267,278 (-)Ensembl
RefSeq Acc Id: NM_001108915   ⟹   NP_001102385
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,636,099 - 129,677,505 (-)NCBI
mRatBN7.21120,225,878 - 120,267,282 (-)NCBI
Dahl_SR_JrHsd1128,602,331 - 128,643,741 (-)NCBI
Lyon_Normotensive1133,557,802 - 133,599,212 (-)NCBI
Lyon_Hypertensive1130,200,564 - 130,241,974 (-)NCBI
F344_StmMcwi1128,785,254 - 128,826,822 (-)NCBI
Rnor_6.01127,557,842 - 127,599,257 (-)NCBI
Rnor_5.01128,623,601 - 128,674,470 (-)NCBI
RGSC_v3.41121,091,586 - 121,142,773 (-)RGD
Celera1112,419,585 - 112,470,051 (-)RGD
Sequence:
RefSeq Acc Id: XM_006229349   ⟹   XP_006229411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,621,462 - 129,677,635 (-)NCBI
mRatBN7.21120,222,835 - 120,267,402 (-)NCBI
Rnor_6.01127,554,798 - 127,598,905 (-)NCBI
Rnor_5.01128,623,601 - 128,674,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229350   ⟹   XP_006229412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,621,462 - 129,677,687 (-)NCBI
mRatBN7.21120,222,835 - 120,267,400 (-)NCBI
Rnor_6.01127,554,798 - 127,598,905 (-)NCBI
Rnor_5.01128,623,601 - 128,674,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085011   ⟹   XP_038940939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,621,462 - 129,677,635 (-)NCBI
mRatBN7.21120,222,835 - 120,267,402 (-)NCBI
RefSeq Acc Id: XM_063269228   ⟹   XP_063125298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,643,204 - 129,677,644 (-)NCBI
RefSeq Acc Id: XM_063269231   ⟹   XP_063125301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,647,839 - 129,677,638 (-)NCBI
RefSeq Acc Id: XR_010055191
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,621,462 - 129,677,788 (-)NCBI
RefSeq Acc Id: NP_001102385   ⟸   NM_001108915
- UniProtKB: A0A8I5ZQV9 (UniProtKB/TrEMBL),   A6JBQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229411   ⟸   XM_006229349
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV9 (UniProtKB/TrEMBL),   A6JBQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229412   ⟸   XM_006229350
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV9 (UniProtKB/TrEMBL),   A6JBQ8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018436   ⟸   ENSRNOT00000018436
Ensembl Acc Id: ENSRNOP00000072402   ⟸   ENSRNOT00000084082
RefSeq Acc Id: XP_038940939   ⟸   XM_039085011
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV9 (UniProtKB/TrEMBL),   A6JBQ8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080514   ⟸   ENSRNOT00000095353
RefSeq Acc Id: XP_063125298   ⟸   XM_063269228
- Peptide Label: isoform X2
- UniProtKB: D3ZVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125301   ⟸   XM_063269231
- Peptide Label: isoform X3
Protein Domains
SOCS box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVT6-F1-model_v2 AlphaFold D3ZVT6 1-318 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690104
Promoter ID:EPDNEW_R629
Type:single initiation site
Name:Asb7_1
Description:ankyrin repeat and SOCS box-containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01127,599,224 - 127,599,284EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305154 AgrOrtholog
BioCyc Gene G2FUF-59005 BioCyc
Ensembl Genes ENSRNOG00000013795 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018436 ENTREZGENE
  ENSRNOT00000018436.7 UniProtKB/TrEMBL
  ENSRNOT00000095353 ENTREZGENE
  ENSRNOT00000095353.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  SOCS box UniProtKB/TrEMBL
InterPro ANKS1/Caskin UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ASB7_SOCS UniProtKB/TrEMBL
  SOCS_box_dom_like UniProtKB/TrEMBL
  SOCS_C UniProtKB/TrEMBL
KEGG Report rno:365277 UniProtKB/TrEMBL
NCBI Gene 365277 ENTREZGENE
PANTHER ANKYRIN REPEAT AND SOCS BOX CONTAINING 7 UniProtKB/TrEMBL
  ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  ANKYRIN REPEAT CONTAINING UniProtKB/TrEMBL
  CASKIN-2 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PhenoGen Asb7 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013795 RatGTEx
SMART ANK UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF158235 UniProtKB/TrEMBL
UniProt A0A8I5ZQV9 ENTREZGENE, UniProtKB/TrEMBL
  A6JBQ8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVT6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Asb7  ankyrin repeat and SOCS box-containing 7  LOC102549815  uncharacterized LOC102549815  Data merged from RGD:7720592 737654 PROVISIONAL
2013-12-18 LOC102549815  uncharacterized LOC102549815      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-25 Asb7  ankyrin repeat and SOCS box-containing 7  Asb7  ankyrin repeat and SOCS box-containing protein 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Asb7  ankyrin repeat and SOCS box-containing protein 7  Asb7_predicted  ankyrin repeat and SOCS box-containing 7 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Asb7_predicted  ankyrin repeat and SOCS box-containing 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED