Lrrc23 (leucine rich repeat containing 23) - Rat Genome Database

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Gene: Lrrc23 (leucine rich repeat containing 23) Rattus norvegicus
Analyze
Symbol: Lrrc23
Name: leucine rich repeat containing 23
RGD ID: 1304779
Description: Predicted to be involved in flagellated sperm motility and radial spoke assembly. Predicted to be located in cytoplasm and sperm flagellum. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in spermatogenic failure 92. Orthologous to human LRRC23 (leucine rich repeat containing 23); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: leucine rich protein, B7; leucine rich protein, B7 gene; leucine-rich repeat-containing protein 23; leucine-rich repeat-containing protein 23-like; LOC100911585; LOC312707; Lrpb7; neuron-specific enolase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,267,572 - 159,277,764 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4159,267,574 - 159,277,794 (-)EnsemblGRCr8
mRatBN7.24157,581,285 - 157,592,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,581,291 - 157,591,860 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4163,803,504 - 163,813,680 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,586,413 - 159,596,589 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,227,996 - 158,238,125 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,294,386 - 157,304,590 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,294,287 - 157,304,653 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl920,241,062 - 20,251,319 (+)Ensemblrn6Rnor6.0
Rnor_5.04224,311,985 - 224,322,180 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44160,899,357 - 160,909,547 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4146,319,344 - 146,329,515 (-)NCBICelera
RGSC_v3.14161,144,293 - 161,154,430 (-)NCBI
Cytogenetic Map4q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
sperm flagellum  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:2450052   PMID:18569155   PMID:27914912  


Genomics

Comparative Map Data
Lrrc23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,267,572 - 159,277,764 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4159,267,574 - 159,277,794 (-)EnsemblGRCr8
mRatBN7.24157,581,285 - 157,592,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,581,291 - 157,591,860 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4163,803,504 - 163,813,680 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,586,413 - 159,596,589 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,227,996 - 158,238,125 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,294,386 - 157,304,590 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,294,287 - 157,304,653 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl920,241,062 - 20,251,319 (+)Ensemblrn6Rnor6.0
Rnor_5.04224,311,985 - 224,322,180 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44160,899,357 - 160,909,547 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4146,319,344 - 146,329,515 (-)NCBICelera
RGSC_v3.14161,144,293 - 161,154,430 (-)NCBI
Cytogenetic Map4q42NCBI
LRRC23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,904,822 - 6,914,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,873,569 - 6,914,241 (+)Ensemblhg38GRCh38
GRCh37127,013,986 - 7,023,393 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,884,213 - 6,893,667 (+)NCBIBuild 36Build 36hg18NCBI36
Celera128,632,507 - 8,642,019 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,869,450 - 6,879,255 (+)NCBIHuRef
CHM1_1127,012,914 - 7,022,288 (+)NCBICHM1_1
T2T-CHM13v2.0126,915,432 - 6,925,409 (+)NCBIT2T-CHM13v2.0
Lrrc23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,746,832 - 124,757,411 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,746,826 - 124,756,690 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386124,769,869 - 124,780,438 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,769,863 - 124,779,727 (-)Ensemblmm10GRCm38
MGSCv376124,719,881 - 124,729,736 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366124,735,482 - 124,745,337 (-)NCBIMGSCv36mm8
Celera6126,451,592 - 126,461,382 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Lrrc23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,491,573 - 4,498,283 (+)Ensembl
ChiLan1.0NW_0049554134,491,443 - 4,498,283 (+)NCBIChiLan1.0ChiLan1.0
LRRC23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,468,201 - 12,477,941 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,464,961 - 12,474,693 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,033,989 - 7,043,704 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,948,809 - 6,958,880 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,948,809 - 6,958,880 (+)EnsemblpanPan2panpan1.1
LRRC23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,128,954 - 38,144,481 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,129,203 - 38,134,676 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha278,472,138 - 8,487,809 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02738,481,520 - 38,497,263 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,482,325 - 38,487,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,355,913 - 38,371,585 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,396,892 - 38,412,613 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,950,869 - 7,966,533 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lrrc23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,246,458 - 102,255,711 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709914,789 - 922,466 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936709914,077 - 923,169 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,809,546 - 63,817,225 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1563,809,298 - 63,836,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,246,067 - 66,272,165 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,922,612 - 6,946,786 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,935,831 - 6,945,300 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660631,272,492 - 1,282,137 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrc23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,547,179 - 3,553,849 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248603,547,199 - 3,553,763 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lrrc23
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1623,104,472 - 23,114,856 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lrrc23
68 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:319
Count of miRNA genes:197
Interacting mature miRNAs:231
Transcripts:ENSRNOT00000051613, ENSRNOT00000071593
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat

Markers in Region
D4Wox50  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,583,043 - 157,583,307 (+)MAPPERmRatBN7.2
mRatBN7.24157,583,043 - 157,583,307 (-)MAPPERmRatBN7.2
Rnor_6.04157,296,145 - 157,296,408NCBIRnor6.0
Rnor_6.0920,249,249 - 20,249,512NCBIRnor6.0
Rnor_5.0919,125,225 - 19,125,488UniSTSRnor5.0
Rnor_5.04224,313,741 - 224,314,004UniSTSRnor5.0
RGSC_v3.44160,901,111 - 160,901,374UniSTSRGSC3.4
Celera4146,321,098 - 146,321,358UniSTS
Cytogenetic Map4q42UniSTS
BE103187  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,581,316 - 157,581,494 (-)MAPPERmRatBN7.2
mRatBN7.24157,581,316 - 157,581,494 (+)MAPPERmRatBN7.2
Rnor_6.04157,294,418 - 157,294,595NCBIRnor6.0
Rnor_6.0920,251,062 - 20,251,239NCBIRnor6.0
Rnor_5.04224,312,014 - 224,312,191UniSTSRnor5.0
Rnor_5.0919,127,038 - 19,127,215UniSTSRnor5.0
RGSC_v3.44160,899,384 - 160,899,561UniSTSRGSC3.4
Celera4146,319,371 - 146,319,548UniSTS
RH 3.4 Map41010.0UniSTS
Cytogenetic Map4q42UniSTS
RH137825  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,587,179 - 157,587,382 (-)MAPPERmRatBN7.2
mRatBN7.24157,587,179 - 157,587,382 (+)MAPPERmRatBN7.2
Rnor_6.04157,300,281 - 157,300,483NCBIRnor6.0
Rnor_6.0920,245,174 - 20,245,376NCBIRnor6.0
Rnor_5.04224,317,877 - 224,318,079UniSTSRnor5.0
Rnor_5.0919,121,150 - 19,121,352UniSTSRnor5.0
RGSC_v3.44160,905,247 - 160,905,449UniSTSRGSC3.4
Celera4146,325,215 - 146,325,417UniSTS
RH 3.4 Map41002.4UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
18 1 29 121 58 55 26 80 26 12 240 143 11 96 53 80 29 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001394347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB038993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC129138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV118996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000051613   ⟹   ENSRNOP00000051124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4159,267,574 - 159,277,764 (-)Ensembl
mRatBN7.2 Ensembl4157,581,291 - 157,591,480 (-)Ensembl
Rnor_6.0 Ensembl4157,294,287 - 157,304,653 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000071593   ⟹   ENSRNOP00000066972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4159,267,574 - 159,277,794 (-)Ensembl
mRatBN7.2 Ensembl4157,581,291 - 157,591,860 (-)Ensembl
Rnor_6.0 Ensembl920,241,062 - 20,251,319 (+)Ensembl
RefSeq Acc Id: NM_001394347   ⟹   NP_001381276
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,267,574 - 159,277,764 (-)NCBI
mRatBN7.24157,581,290 - 157,591,480 (-)NCBI
RefSeq Acc Id: XM_063286137   ⟹   XP_063142207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,267,572 - 159,277,135 (-)NCBI
RefSeq Acc Id: XM_063286138   ⟹   XP_063142208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,269,084 - 159,277,135 (-)NCBI
RefSeq Acc Id: XR_005503236
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,268,503 - 159,277,136 (-)NCBI
mRatBN7.24157,582,225 - 157,592,188 (-)NCBI
Ensembl Acc Id: ENSRNOP00000051124   ⟸   ENSRNOT00000051613
Ensembl Acc Id: ENSRNOP00000066972   ⟸   ENSRNOT00000071593
RefSeq Acc Id: NP_001381276   ⟸   NM_001394347
- UniProtKB: G3V9K7 (UniProtKB/TrEMBL),   A6ILK8 (UniProtKB/TrEMBL),   Q6AYI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142207   ⟸   XM_063286137
- Peptide Label: isoform X1
- UniProtKB: M0RBN0 (UniProtKB/TrEMBL),   Q6AYI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142208   ⟸   XM_063286138
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9K7-F1-model_v2 AlphaFold G3V9K7 1-345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693388
Promoter ID:EPDNEW_R3913
Type:single initiation site
Name:Lrrc23_1
Description:leucine rich repeat containing 23
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04157,304,593 - 157,304,653EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304779 AgrOrtholog
BioCyc Gene G2FUF-43068 BioCyc
Ensembl Genes ENSRNOG00000026309 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000047890 Ensembl
Ensembl Transcript ENSRNOT00000051613 ENTREZGENE
  ENSRNOT00000051613.5 UniProtKB/TrEMBL
  ENSRNOT00000071593 ENTREZGENE
  ENSRNOT00000071593.4 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114040 IMAGE-MGC_LOAD
InterPro L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  SDS22/Internalin_LRR UniProtKB/TrEMBL
MGC_CLONE MGC:93955 IMAGE-MGC_LOAD
NCBI Gene 312707 ENTREZGENE
PANTHER LEUCINE RICH REPEAT CONTAINING 23 UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 UniProtKB/TrEMBL
  NISCHARIN RELATED UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/TrEMBL
  LRR_9 UniProtKB/TrEMBL
PhenoGen Lrrc23 PhenoGen
PROSITE LRR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026309 RatGTEx
  ENSRNOG00000047890 RatGTEx
SMART LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  Outer arm dynein light chain 1 UniProtKB/TrEMBL
UniProt A6ILK6_RAT UniProtKB/TrEMBL
  A6ILK8 ENTREZGENE, UniProtKB/TrEMBL
  A6ILK9_RAT UniProtKB/TrEMBL
  A6ILL0_RAT UniProtKB/TrEMBL
  G3V9K7 ENTREZGENE, UniProtKB/TrEMBL
  M0RBN0 ENTREZGENE, UniProtKB/TrEMBL
  Q6AYI9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Lrrc23  leucine rich repeat containing 23  LOC100911585  leucine-rich repeat-containing protein 23-like  Data merged from RGD:6491966 737654 PROVISIONAL
2012-07-05 LOC100911585  leucine-rich repeat-containing protein 23-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Lrrc23  leucine rich repeat containing 23  Lrpb7  leucine rich protein, B7 gene  Symbol and Name updated 1299863 APPROVED
2005-12-06 Lrpb7  leucine rich protein, B7 gene  Lrpb7_predicted  leucine rich protein, B7 gene (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Lrpb7_predicted  leucine rich protein, B7 gene (predicted)      Symbol and Name status set to approved 70820 APPROVED