Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Xirp1 | Rat | Poisoning | | ISO | XIRP1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21964422 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Xirp1 | Rat | Poisoning | | ISO | XIRP1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21964422 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| # | Reference Title | Reference Citation |
| 1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
| 3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
| PMID:10021346 | PMID:12203715 | PMID:15454575 | PMID:16708114 | PMID:17766470 | PMID:17855775 | PMID:22658674 | PMID:23117660 | PMID:33261556 | PMID:35352799 |
| Xirp1 (Rattus norvegicus - Norway rat) |
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| XIRP1 (Homo sapiens - human) |
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| Xirp1 (Mus musculus - house mouse) |
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| Xirp1 (Chinchilla lanigera - long-tailed chinchilla) |
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| XIRP1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| XIRP1 (Canis lupus familiaris - dog) |
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| Xirp1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| XIRP1 (Sus scrofa - pig) |
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| XIRP1 (Chlorocebus sabaeus - green monkey) |
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| Xirp1 (Heterocephalus glaber - naked mole-rat) |
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| Xirp1 (Rattus rattus - black rat) |
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| The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
| RH132161 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12 | 12 | 67 | 142 | 67 | 66 | 35 | 39 | 35 | 6 | 268 | 139 | 10 | 120 | 74 | 92 | 31 | 17 | 17 |
| RefSeq Transcripts | NM_001430574 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| NM_001430575 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001430576 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001430577 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001430578 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001430579 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006226620 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006226624 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006244151 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006244155 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008757884 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008766701 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017596154 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017603735 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039082728 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_063266351 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_063266352 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001839578 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001844797 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001844798 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001844799 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | JAXUCZ010000008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSRNOT00000055888 ⟹ ENSRNOP00000052739 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000093872 ⟹ ENSRNOP00000077004 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000101246 ⟹ ENSRNOP00000091019 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000123456 ⟹ ENSRNOP00000109043 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000155827 ⟹ ENSRNOP00000111235 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_006244151 ⟹ XP_006244213 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_006244155 ⟹ XP_006244217 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_008766701 ⟹ XP_008764923 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_017596154 ⟹ XP_017451643 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_039082728 ⟹ XP_038938656 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_063266351 ⟹ XP_063122421 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063266352 ⟹ XP_063122422 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| Protein RefSeqs | NP_001417503 | (Get FASTA) | NCBI Sequence Viewer |
| NP_001417504 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001417505 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001417506 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001417507 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001417508 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006244213 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006244217 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008764923 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451643 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038938656 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_063122421 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_063122422 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSRNOP00000052739 | ||
| ENSRNOP00000052739.4 | |||
| ENSRNOP00000077004 | |||
| ENSRNOP00000077004.1 | |||
| ENSRNOP00000091019 | |||
| ENSRNOP00000091019.1 | |||
| ENSRNOP00000109043.1 | |||
| ENSRNOP00000111235.1 |
| RefSeq Acc Id: | XP_008764923 ⟸ XM_008766701 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A8I5YBK9 (UniProtKB/TrEMBL), A6I3Y7 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_006244213 ⟸ XM_006244151 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
| RefSeq Acc Id: | XP_006244217 ⟸ XM_006244155 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
| RefSeq Acc Id: | XP_017451643 ⟸ XM_017596154 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
| Ensembl Acc Id: | ENSRNOP00000052739 ⟸ ENSRNOT00000055888 |
| RefSeq Acc Id: | XP_038938656 ⟸ XM_039082728 |
| - Peptide Label: | isoform X1 |
| Ensembl Acc Id: | ENSRNOP00000077004 ⟸ ENSRNOT00000093872 |
| Ensembl Acc Id: | ENSRNOP00000091019 ⟸ ENSRNOT00000101246 |
| RefSeq Acc Id: | XP_063122421 ⟸ XM_063266351 |
| - Peptide Label: | isoform X2 |
| RefSeq Acc Id: | XP_063122422 ⟸ XM_063266352 |
| - Peptide Label: | isoform X2 |
| Ensembl Acc Id: | ENSRNOP00000109043 ⟸ ENSRNOT00000123456 |
| Ensembl Acc Id: | ENSRNOP00000111235 ⟸ ENSRNOT00000155827 |
| Name | Modeler | Protein Id | AA Range | Protein Structure |
| AF-D4ABA9-F1-model_v2 | AlphaFold | D4ABA9 | 1-1153 | view protein structure |
| eQTL | View at Phenogen | |
| WGCNA | View at Phenogen | |
| Tissue/Strain Expression | View at Phenogen |
| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1304776 | AgrOrtholog |
| BioCyc Gene | G2FUF-28769 | BioCyc |
| Ensembl Genes | ENSRNOG00000037085 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000055888 | ENTREZGENE |
| ENSRNOT00000055888.5 | UniProtKB/TrEMBL | |
| ENSRNOT00000093872 | ENTREZGENE | |
| ENSRNOT00000093872.2 | UniProtKB/TrEMBL | |
| ENSRNOT00000101246 | ENTREZGENE | |
| ENSRNOT00000101246.2 | UniProtKB/TrEMBL | |
| ENSRNOT00000123456.1 | UniProtKB/TrEMBL | |
| ENSRNOT00000155827.1 | UniProtKB/TrEMBL | |
| InterPro | Actin-binding_Xin_repeat | UniProtKB/TrEMBL |
| XIRP1/XIRP2 | UniProtKB/TrEMBL | |
| KEGG Report | rno:100910104 | UniProtKB/TrEMBL |
| NCBI Gene | Xirp1 | ENTREZGENE |
| PANTHER | PTHR22591 | UniProtKB/TrEMBL |
| XIN ACTIN-BINDING REPEAT-CONTAINING PROTEIN 1 | UniProtKB/TrEMBL | |
| Pfam | Xin | UniProtKB/TrEMBL |
| PhenoGen | Xirp1 | PhenoGen |
| PROSITE | XIN | UniProtKB/TrEMBL |
| RatGTEx | ENSRNOG00000037085 | RatGTEx |
| UniProt | A0A8I5YBK9 | ENTREZGENE, UniProtKB/TrEMBL |
| A6I3Y7 | ENTREZGENE, UniProtKB/TrEMBL | |
| D4ABA9 | ENTREZGENE, UniProtKB/TrEMBL |
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2015-03-16 | Xirp1 | xin actin-binding repeat containing 1 | Xirp1 | xin actin-binding repeat containing 1 | Type changed (type changed from [null] to [protein-coding]) | 629549 | APPROVED |
| 2015-02-26 | Xirp1 | xin actin-binding repeat containing 1 | LOC100910104 | xin actin-binding repeat-containing protein 1-like | Data merged from RGD:6500102 | 737654 | APPROVED |
| 2012-07-05 | LOC100910104 | xin actin-binding repeat-containing protein 1-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
| 2008-03-03 | Xirp1 | xin actin-binding repeat containing 1 | Cmya1_predicted | cardiomyopathy associated 1 (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2005-01-12 | Cmya1_predicted | cardiomyopathy associated 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |