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Gene: Jph4 (junctophilin 4) Rattus norvegicus

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Symbol:

Jph4 (Ensembl: Ap1g2)

Name:

junctophilin 4 (Ensembl:adaptor related protein complex 1 subunit gamma 2)

RGD ID:

1303170

Description:

Predicted to be involved in regulation of synaptic plasticity. Predicted to act upstream of or within several processes, including learning; neuromuscular process controlling balance; and regulation of store-operated calcium entry. Predicted to be located in dendritic shaft and smooth endoplasmic reticulum. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Orthologous to human JPH4 (junctophilin 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

JP-4; junctophilin-4; junctophilin-like 1 protein; LOC361040

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	JPH4 (junctophilin 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Jph4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Jph4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	JPH4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	JPH4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Jph4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	JPH4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	JPH4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Jph4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Jph4 (junctophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	AMTN (amelotin)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	JPH4 (junctophilin 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Jph4 (junctophilin 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	jph-1	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	jp	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	jp	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	jph4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	jph4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	32,549,536 - 32,558,859 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	32,549,555 - 32,558,859 (-)	Ensembl				GRCr8
mRatBN7.2	15	28,579,579 - 28,588,903 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	28,571,568 - 28,587,573 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	30,425,288 - 30,434,611 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	31,572,480 - 31,581,804 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	29,815,140 - 29,824,462 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	33,767,116 - 33,777,289 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	33,768,595 - 33,775,109 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	37,655,680 - 37,662,194 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	33,214,543 - 33,221,059 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	28,159,041 - 28,165,555 (-)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

ethylparaben (ISO)

fulvestrant (ISO)

gentamycin (EXP)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

niclosamide (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

learning (ISO)

neuromuscular process controlling balance (ISO)

protein transport (IEA)

regulation of calcium ion transport (IEA)

regulation of cytokine production (ISO)

regulation of multicellular organismal process (IEA)

regulation of store-operated calcium entry (ISO)

regulation of synaptic plasticity (IBA,ISO)

vesicle-mediated transport (IEA)

Cellular Component

AP-1 adaptor complex (IEA)

cytoplasmic vesicle (IEA)

cytoplasmic vesicle membrane (IEA)

dendritic shaft (ISO)

endomembrane system (IEA)

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IBA,IEA)

Golgi apparatus (IEA)

junctional membrane complex (IBA,IEA)

membrane coat (IEA)

plasma membrane (IBA,IEA)

smooth endoplasmic reticulum (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Coexpression of junctophilin type 3 and type 4 in brain.	Nishi M, etal., Brain Res Mol Brain Res 2003 Oct 21;118(1-2):102-10.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17347645	PMID:22871113	PMID:26929330

Genomics

Comparative Map Data

Jph4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	32,549,536 - 32,558,859 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	32,549,555 - 32,558,859 (-)	Ensembl				GRCr8
mRatBN7.2	15	28,579,579 - 28,588,903 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	28,571,568 - 28,587,573 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	30,425,288 - 30,434,611 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	31,572,480 - 31,581,804 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	29,815,140 - 29,824,462 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	33,767,116 - 33,777,289 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	33,768,595 - 33,775,109 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	37,655,680 - 37,662,194 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	33,214,543 - 33,221,059 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	28,159,041 - 28,165,555 (-)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

JPH4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	23,568,038 - 23,578,790 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	23,568,038 - 23,578,790 (-)	Ensembl			hg38	GRCh38
GRCh37	14	24,037,247 - 24,047,999 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,107,087 - 23,117,834 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	23,107,087 - 23,117,834	NCBI
Celera	14	3,899,912 - 3,910,677 (-)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	4,153,758 - 4,164,523 (-)	NCBI		HuRef
CHM1_1	14	24,035,893 - 24,046,658 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	17,768,608 - 17,779,359 (-)	NCBI		T2T-CHM13v2.0

Jph4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	55,344,283 - 55,354,392 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	55,344,283 - 55,354,392 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	55,106,826 - 55,116,935 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,106,826 - 55,116,935 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	55,725,663 - 55,735,115 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,060,897 - 54,070,349 (-)	NCBI		MGSCv36	mm8
Celera	14	52,912,723 - 52,922,161 (-)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.07	NCBI

Jph4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	36,785,003 - 36,795,196 (+)	Ensembl
ChiLan1.0	NW_004955409	36,785,003 - 36,795,196 (+)	NCBI	ChiLan1.0	ChiLan1.0

JPH4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	24,999,050 - 25,010,095 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	24,215,542 - 24,226,588 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	4,386,487 - 4,397,552 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	22,479,807 - 22,490,924 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	22,479,813 - 22,490,924 (-)	Ensembl			panPan2	panpan1.1

JPH4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	3,793,413 - 3,803,831 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	3,794,734 - 3,802,082 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	3,715,289 - 3,725,335 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	3,903,696 - 3,913,744 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	3,903,701 - 3,913,498 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,594,905 - 3,604,951 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	3,656,357 - 3,666,402 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	3,918,442 - 3,928,488 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Jph4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	35,537,794 - 35,546,668 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	841,816 - 851,135 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	842,324 - 851,190 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JPH4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	75,522,630 - 75,532,982 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	75,522,349 - 75,532,983 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,839,213 - 80,848,433 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JPH4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	23,939,262 - 23,949,646 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	23,940,858 - 23,948,322 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666059	22,468,589 - 22,479,363 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Jph4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	9,000,833 - 9,009,517 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624820	9,000,864 - 9,010,700 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Jph4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	69,882,280 - 69,891,655 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Jph4
65 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	43
Count of miRNA genes:	41
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000033722
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	22728353	42072050	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	7	37	154	70	66	45	14	45	5	186	75	6	134	45	91	21	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001003711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY341260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC160922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033722 ⟹ ENSRNOP00000034702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	28,571,568 - 28,587,573 (-)	Ensembl
Rnor_6.0 Ensembl	15	33,768,595 - 33,775,109 (-)	Ensembl

RefSeq Acc Id:

NM_001003711 ⟹ NP_001003711

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	32,549,536 - 32,558,859 (-)	NCBI
mRatBN7.2	15	28,579,579 - 28,588,903 (-)	NCBI
Rnor_6.0	15	33,768,595 - 33,775,109 (-)	NCBI
Rnor_5.0	15	37,655,680 - 37,662,194 (-)	NCBI
RGSC_v3.4	15	33,214,543 - 33,221,059 (-)	RGD
Celera	15	28,159,041 - 28,165,555 (-)	RGD

Sequence:

show sequence

ATGCATGTCCCCCTGGGGCGCAAGTTCGACTTTGACGACGGGGGCTGCTACGTGGGGGGCTGGG
AGGCGGGGCGGGCACATGGCTACGGCGTGTGCACCGGGCCCGGCGCCCAGGGAGAGTACAGCGG
CTGCTGGGCTCACGGCTTCGAGTCGCTGGGTGTCTTCACGGGGCCCGGCGGACACAGTTACCAG
GGCCACTGGCAGCAGGGCAAGCGCGAAGGGCTGGGCGTGGAGCGCAAGAGCCGCTGGACCTACC
GCGGCGAGTGGCTGGGCGGGCTGAAGGGGCGCAGCGGCGTGTGGGAGAGCGTGTCCGGCCTGCG
CTACGCCGGGCTCTGGAAGGACGGCTTCCAGGACGGCTACGGCACCGAGACCTACTCCGATGGA
GGCACTTACCAAGGCCAGTGGCAAGCCGGAAAACGCCATGGCTACGGGGTACGCCAGAGTGTAC
CCTACCACCAGGCGGCGCTTCTGCGCTCACCCCGCCGCACCTCCCTGGACTCCGGCCACAGCGA
CCCCCCGACGCCGCCTCCACCCCTACCCCTACCAGGAGATGAAGGAGGCAGCCCTGCCTCCGGC
TCCAGAGGCGGCTTCGTACTGGCGGGGCCAGGGGACGCCGATGGGGCGTCTTCCCGTAAGCGCA
CCCCAGCAGCAGGTGGATTCTTCCGCCGTTCACTGCTGCTCAGCGGGCTCCGGGCTGGTGGGCG
CCGCAGCTCCCTGGGCAGCAAGAGGGGATCACTACGAAGCGAGGTGAGCAGCGAAGTGGGCAGT
ACAGGACCCCCGGGCTCCGAGGCCAGCGGGCCCCCTATCCCAGCGCCACCTGCCCTCATCGAGG
GCTCTGCCACTGAGGTGTACGCCGGTGAGTGGCGTGCGGACCGGCGCAGTGGCTACGGAGTGAG
CCAGAGATCCAACGGGCTGCGCTATGAAGGCGAGTGGCTGGGCAACCGACGGCACGGATACGGG
CGCACCACCCGGCCCGATGGCTCCCGTGAGGAGGGCAAGTACAAGCGCAACCGGCTGGTACACG
GGGGACGTGTCCGCAGCCTCCTGCCTCTGGCCCTTAGACGGGGCAAAGTCAAGGAGAAAGTGGA
CAGGGCTGTCGAAGGTGCCCGTCGAGCTGTGAGTGCTGCCCGCCAGCGCCAGGAAATTGCTGCT
GCCAGGGCAGCAGACGCCCTCCTCAAAGCAGTGGCAGCCAGCAGCGTCGCGGAGAAGGCCGTGG
AGGCGGCGCGGATGGCCAAGCTGATAGCCCAGGATCTACAACCCATGTTAGAGGCCCCAGGCCG
CAGACCCCGACAGGATTCTGGAGGTTCTGACACAGAGCCTTTGGATGAGGACAGCCCCGGGGTA
TACGAGAATGGACTGACCCCCTCAGAGGGATCTCCGGAACTGCCCAGCAGCCCTGCTTCCTCCC
ACCAACCTTGGCGGGCCCCTCCCTGCCGGAGCCCACTGCCTCCCGGAGGGAACTGGGGCCCCTT
CTCCAGTCCTAAAGCTTGGCCTGAGGAGTGGGGGGGTCCTGGTGAGCAGGCAGAGGAACTGGCT
GGCTATGAGGCTGAGGATGAGGCTGGGATGCAGGGTCCAGGACCGAGAGATGGTTCCCCACTTC
TCGGAGGCTGCAGTGACAGTTCAGGAAGTCTTCGAGAGGAGGAAGGGGAAGATGAAGAGTCCTT
GCCCCAGCTGAGGGCCCCAGGAGGCTCAGAATCTGAGCCTGTCACCACTCCAGTTTTGAGGGGC
CTGTCTTCAAGGGGTCCTGATGCTGGGTGCCTGACAGAAGAGTTTGAGGAGCCTGCTGCCACCG
AGAGGCCTGCCCAGCCGGGAGCTGCCAACCCCCTGGTGGTAGGAGCTGTGGCCTTGCTGGATCT
CAGCCTGGCGTTCCTGTTCTCCCAGCTCCTCACCTGA

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Protein Sequences


Protein RefSeqs	NP_001003711	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAR08902	(Get FASTA)	NCBI Sequence Viewer
	EDM14220	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000036180
GenBank Protein	Q69FB3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001003711 ⟸ NM_001003711

- UniProtKB:

Q69FB3 (UniProtKB/Swiss-Prot), A6KGZ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHVPLGRKFDFDDGGCYVGGWEAGRAHGYGVCTGPGAQGEYSGCWAHGFESLGVFTGPGGHSYQ
GHWQQGKREGLGVERKSRWTYRGEWLGGLKGRSGVWESVSGLRYAGLWKDGFQDGYGTETYSDG
GTYQGQWQAGKRHGYGVRQSVPYHQAALLRSPRRTSLDSGHSDPPTPPPPLPLPGDEGGSPASG
SRGGFVLAGPGDADGASSRKRTPAAGGFFRRSLLLSGLRAGGRRSSLGSKRGSLRSEVSSEVGS
TGPPGSEASGPPIPAPPALIEGSATEVYAGEWRADRRSGYGVSQRSNGLRYEGEWLGNRRHGYG
RTTRPDGSREEGKYKRNRLVHGGRVRSLLPLALRRGKVKEKVDRAVEGARRAVSAARQRQEIAA
ARAADALLKAVAASSVAEKAVEAARMAKLIAQDLQPMLEAPGRRPRQDSGGSDTEPLDEDSPGV
YENGLTPSEGSPELPSSPASSHQPWRAPPCRSPLPPGGNWGPFSSPKAWPEEWGGPGEQAEELA
GYEAEDEAGMQGPGPRDGSPLLGGCSDSSGSLREEEGEDEESLPQLRAPGGSESEPVTTPVLRG
LSSRGPDAGCLTEEFEEPAATERPAQPGAANPLVVGAVALLDLSLAFLFSQLLT

hide sequence

Ensembl Acc Id:

ENSRNOP00000034702 ⟸ ENSRNOT00000033722

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q69FB3-F1-model_v2	AlphaFold	Q69FB3	1-630	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303170	AgrOrtholog
BioCyc Gene	G2FUF-13740	BioCyc
Ensembl Genes	ENSRNOG00000025589	Ensembl
	ENSRNOG00000025619	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000033977	ENTREZGENE
Gene3D-CATH	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	UniProtKB/Swiss-Prot
InterPro	Junctophilin	UniProtKB/Swiss-Prot
	MORN	UniProtKB/Swiss-Prot
KEGG Report	rno:445271	UniProtKB/Swiss-Prot
NCBI Gene	445271	ENTREZGENE
PANTHER	JUNCTOPHILIN-4	UniProtKB/Swiss-Prot
	PTHR23085	UniProtKB/Swiss-Prot
Pfam	MORN	UniProtKB/Swiss-Prot
PhenoGen	Jph4	PhenoGen
PIRSF	Junctophilin	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000025589	RatGTEx
	ENSRNOG00000025619	RatGTEx
SMART	MORN	UniProtKB/Swiss-Prot
Superfamily-SCOP	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	UniProtKB/Swiss-Prot
UniProt	A0ABK0LF69_RAT	UniProtKB/TrEMBL
	A6KGZ1	ENTREZGENE, UniProtKB/TrEMBL
	JPH4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-02-23	Jph4	junctophilin 4	Jph4_predicted	junctophilin 4 (predicted)	Data merged from RGD:1306598	737654	APPROVED
2005-01-12	Jph4_predicted	junctophilin 4 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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