Jph4 (junctophilin 4) - Rat Genome Database

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Gene: Jph4 (junctophilin 4) Heterocephalus glaber
Analyze
Symbol: Jph4
Name: junctophilin 4
RGD ID: 18912638
Description: INVOLVED IN learning (ortholog); neuromuscular process controlling balance (ortholog); regulation of cytokine production (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); COVID-19 (ortholog); lysinuric protein intolerance (ortholog); FOUND IN dendritic shaft (ortholog); smooth endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Junctophilin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,000,833 - 9,009,517 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,000,864 - 9,010,700 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Jph4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,000,833 - 9,009,517 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,000,864 - 9,010,700 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JPH4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,568,038 - 23,578,790 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,568,038 - 23,578,790 (-)EnsemblGRCh38hg38GRCh38
GRCh371424,037,247 - 24,047,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,107,087 - 23,117,834 (-)NCBINCBI36Build 36hg18NCBI36
Build 341423,107,087 - 23,117,834NCBI
Celera143,899,912 - 3,910,677 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef144,153,758 - 4,164,523 (-)NCBIHuRef
CHM1_11424,035,893 - 24,046,658 (-)NCBICHM1_1
T2T-CHM13v2.01417,768,608 - 17,779,359 (-)NCBIT2T-CHM13v2.0
Jph4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,344,283 - 55,354,392 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,344,283 - 55,354,392 (-)EnsemblGRCm39 Ensembl
GRCm381455,106,826 - 55,116,935 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,106,826 - 55,116,935 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,725,663 - 55,735,115 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,060,897 - 54,070,349 (-)NCBIMGSCv36mm8
Celera1452,912,723 - 52,922,161 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.07NCBI
Jph4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,549,536 - 32,558,859 (-)NCBIGRCr8
mRatBN7.21528,579,579 - 28,588,903 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,571,568 - 28,587,573 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,425,288 - 30,434,611 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,572,480 - 31,581,804 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,815,140 - 29,824,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,767,116 - 33,777,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,768,595 - 33,775,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,655,680 - 37,662,194 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,214,543 - 33,221,059 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1528,159,041 - 28,165,555 (-)NCBICelera
Cytogenetic Map15p13NCBI
Jph4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540936,785,003 - 36,795,196 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540936,785,003 - 36,795,196 (+)NCBIChiLan1.0ChiLan1.0
JPH4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,999,050 - 25,010,095 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,215,542 - 24,226,588 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,386,487 - 4,397,552 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,479,807 - 22,490,924 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,479,813 - 22,490,924 (-)Ensemblpanpan1.1panPan2
JPH4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,793,413 - 3,803,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,794,734 - 3,802,082 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,715,289 - 3,725,335 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,903,696 - 3,913,744 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,903,701 - 3,913,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,594,905 - 3,604,951 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,656,357 - 3,666,402 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,918,442 - 3,928,488 (-)NCBIUU_Cfam_GSD_1.0
Jph4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,537,794 - 35,546,668 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722841,816 - 851,135 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722842,324 - 851,190 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JPH4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,522,630 - 75,532,982 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,522,349 - 75,532,983 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,839,213 - 80,848,433 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JPH4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,939,262 - 23,949,646 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,940,858 - 23,948,322 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605922,468,589 - 22,479,363 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012193   ⟹   ENSHGLP00000012060
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248209,000,833 - 9,009,517 (+)Ensembl
RefSeq Acc Id: XM_004864148   ⟹   XP_004864205
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248209,000,875 - 9,010,700 (+)NCBI
RefSeq Acc Id: XM_021243917   ⟹   XP_021099576
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248209,000,864 - 9,010,700 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864205 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099576 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00035 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012060
GenBank Protein JAN99811 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021099576   ⟸   XM_021243917
- Peptide Label: isoform X2
- UniProtKB: G5ASM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004864205   ⟸   XM_004864148
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J889 (UniProtKB/TrEMBL),   G5ASM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012060   ⟸   ENSHGLT00000012193


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008636 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012193 ENTREZGENE
Gene3D-CATH Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/TrEMBL
InterPro Junctophilin UniProtKB/TrEMBL
  MORN UniProtKB/TrEMBL
KEGG Report hgl:101709116 UniProtKB/TrEMBL
NCBI Gene Jph4 ENTREZGENE
PANTHER JUNCTOPHILIN-4 UniProtKB/TrEMBL
  PTHR23085 UniProtKB/TrEMBL
Pfam MORN UniProtKB/TrEMBL
PIRSF Junctophilin UniProtKB/TrEMBL
SMART MORN UniProtKB/TrEMBL
Superfamily-SCOP Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/TrEMBL
UniProt A0A0P6J889 ENTREZGENE, UniProtKB/TrEMBL
  G5ASM4 ENTREZGENE, UniProtKB/TrEMBL