Elocl1 (elongin C like 1) - Rat Genome Database

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Gene: Elocl1 (elongin C like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Elocl1
Name: elongin C like 1
RGD ID: 9368177
Description: Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of elongin complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongin-C-like; LOC103691088; LOC680767; similar to transcription elongation factor B (SIII), polypeptide 1; transcription elongation factor B polypeptide 1 pseudogene
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,103,409 - 22,104,061 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1222,103,405 - 22,103,833 (-)EnsemblGRCr8
GRCr8 Ensembl2025,752,857 - 25,753,279 (+)EnsemblGRCr8
mRatBN7.21216,989,717 - 16,991,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,754,169 - 25,754,577 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1216,989,748 - 16,990,086 (-)EnsemblmRatBN7.2
Rnor_6.01219,254,160 - 19,254,590 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01221,312,690 - 21,313,028 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41217,553,581 - 17,553,919 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1218,920,074 - 18,920,519 (-)NCBICelera
Cytogenetic Map12q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Elocl1
11 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)122013902826430640Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
5 1 3 11 24 52 28 1 18 19 9 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039089868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000089349   ⟹   ENSRNOP00000072159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1222,103,405 - 22,103,833 (-)Ensembl
mRatBN7.2 Ensembl1216,989,748 - 16,990,086 (-)Ensembl
Rnor_6.0 Ensembl1219,254,189 - 19,254,527 (-)Ensembl
RefSeq Acc Id: XM_039089868   ⟹   XP_038945796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,103,409 - 22,104,061 (-)NCBI
mRatBN7.21216,989,717 - 16,991,140 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038945796 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067924.1
  ENSRNOP00000072159
  ENSRNOP00000072159.1
RefSeq Acc Id: XP_038945796   ⟸   XM_039089868
- UniProtKB: A0A0G2K2A0 (UniProtKB/TrEMBL),   A0A096MIY6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000072159   ⟸   ENSRNOT00000089349
Protein Domains
SKP1 component POZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K2A0-F1-model_v2 AlphaFold A0A0G2K2A0 1-112 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9368177 AgrOrtholog
BioCyc Gene G2FUF-19823 BioCyc
Ensembl Genes ENSRNOG00000051063 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000061371 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000076534.3 UniProtKB/TrEMBL
  ENSRNOT00000089349 ENTREZGENE
  ENSRNOT00000089349.3 UniProtKB/TrEMBL
Gene3D-CATH Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro ELC1 UniProtKB/TrEMBL
  SKP1-like UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Skp1_comp_POZ UniProtKB/TrEMBL
NCBI Gene LOC103691088 ENTREZGENE
PANTHER PTHR20648 UniProtKB/TrEMBL
Pfam Skp1_POZ UniProtKB/TrEMBL
PhenoGen Elocl1 PhenoGen
RatGTEx ENSRNOG00000051063 RatGTEx
  ENSRNOG00000061371 RatGTEx
SMART Skp1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A096MIY6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K2A0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Elocl1  elongin C like 1  LOC103691088  transcription elongation factor B polypeptide 1 pseudogene  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC103691088  transcription elongation factor B polypeptide 1 pseudogene  LOC680767  similar to transcription elongation factor B (SIII), polypeptide 1  Data merged from RGD:1588199 737654 PROVISIONAL
2014-08-25 LOC103691088  transcription elongation factor B polypeptide 1 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC680767  similar to transcription elongation factor B (SIII), polypeptide 1      Symbol and Name status set to provisional 70820 PROVISIONAL