Potefam2 (POTE ankyrin domain family member 2) - Rat Genome Database

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Gene: Potefam2 (POTE ankyrin domain family member 2) Rattus norvegicus
Analyze
Symbol: Potefam2 (Ensembl: LOC102548067)
Name: POTE ankyrin domain family member 2 (Ensembl:uncharacterized LOC102548067)
RGD ID: 7545650
Description: INTERACTS WITH atrazine (ortholog); epoxiconazole (ortholog); sodium arsenite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 7-like; LOC102548067; POTE ankyrin domain family member H-like; putative POTE ankyrin domain family member M; uncharacterized LOC102548067; uncharacterized protein LOC102548067; uncharacterized protein Potefam2
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81125,680,543 - 125,859,269 (-)NCBIGRCr8
mRatBN7.21116,271,482 - 116,447,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1116,311,960 - 116,447,353 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01123,447,308 - 123,623,066 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01124,623,819 - 124,686,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1108,534,241 - 108,710,156 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Potefam2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81125,680,543 - 125,859,269 (-)NCBIGRCr8
mRatBN7.21116,271,482 - 116,447,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1116,311,960 - 116,447,353 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01123,447,308 - 123,623,066 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01124,623,819 - 124,686,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1108,534,241 - 108,710,156 (-)NCBICelera
Cytogenetic Map1q22NCBI
Potefam2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39762,396,565 - 62,473,491 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl762,460,112 - 62,461,666 (-)EnsemblGRCm39 Ensembl
GRCm38762,746,817 - 62,823,743 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl762,778,423 - 62,823,673 (-)EnsemblGRCm38mm10GRCm38
MGSCv37769,955,248 - 69,968,635 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36762,689,312 - 62,702,699 (-)NCBIMGSCv36mm8
Celera760,174,085 - 60,256,515 (-)NCBICelera
Cytogenetic Map7CNCBI

Variants

.
Variants in Potefam2
831 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
61346Rf2Renal disease susceptibility QTL 23.7urine protein amount (VT:0005160)urine protein level (CMO:0000591)199267916144267916Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1102268556147268556Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)199267916144267916Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847121834139Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2303591Gluco41Glucose level QTL 412blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1102168504147168504Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1103111621148111621Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008759563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000090893   ⟹   ENSRNOP00000092058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1116,311,960 - 116,447,353 (-)Ensembl
RefSeq Acc Id: XM_039094158   ⟹   XP_038950086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,723,846 - 125,859,269 (-)NCBI
mRatBN7.21116,306,890 - 116,447,353 (-)NCBI
RefSeq Acc Id: XM_039094164   ⟹   XP_038950092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,680,543 - 125,859,269 (-)NCBI
mRatBN7.21116,271,482 - 116,447,353 (-)NCBI
RefSeq Acc Id: XM_039094170   ⟹   XP_038950098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,723,846 - 125,859,236 (-)NCBI
mRatBN7.21116,306,890 - 116,447,353 (-)NCBI
RefSeq Acc Id: XM_039094183   ⟹   XP_038950111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,723,846 - 125,823,136 (-)NCBI
mRatBN7.21116,306,890 - 116,411,156 (-)NCBI
RefSeq Acc Id: XM_039094187   ⟹   XP_038950115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,723,846 - 125,859,236 (-)NCBI
mRatBN7.21116,306,890 - 116,447,353 (-)NCBI
RefSeq Acc Id: XM_039094189   ⟹   XP_038950117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,771,766 - 125,859,236 (-)NCBI
mRatBN7.21116,359,891 - 116,447,353 (-)NCBI
RefSeq Acc Id: XR_005494531
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,756,534 - 125,859,236 (-)NCBI
mRatBN7.21116,344,663 - 116,447,353 (-)NCBI
RefSeq Acc Id: XR_010060365
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,734,704 - 125,859,236 (-)NCBI
RefSeq Acc Id: XR_010060367
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,771,766 - 125,859,236 (-)NCBI
RefSeq Acc Id: XR_010060368
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,771,766 - 125,859,236 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038950092   ⟸   XM_039094164
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950115   ⟸   XM_039094187
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950098   ⟸   XM_039094170
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950086   ⟸   XM_039094158
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950111   ⟸   XM_039094183
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950117   ⟸   XM_039094189
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000092058   ⟸   ENSRNOT00000090893

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-59108 BioCyc
Ensembl Genes ENSRNOG00000051782 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000090893.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene LOC102548067 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN 36-RELATED UniProtKB/TrEMBL
  POTE ANKYRIN DOMAIN FAMILY, MEMBER G-LIKE UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
PhenoGen Potefam2 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000051782 RatGTEx
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8I6AFS7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-20 Potefam2  POTE ankyrin domain family member 2  LOC102548067  uncharacterized LOC102548067  Name and Symbol changed 629549 APPROVED
2013-12-17 LOC102548067  uncharacterized LOC102548067      Symbol and Name status set to provisional 70820 PROVISIONAL