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Gene: C19h19orf53 (similar to human chromosome 19 open reading frame 53) Rattus norvegicus

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Symbol:

C19h19orf53

Name:

similar to human chromosome 19 open reading frame 53

RGD ID:

735128

Description:

Orthologous to human C19orf53 (chromosome 19 open reading frame 53); INTERACTS WITH bisphenol A; 1,2-dimethylhydrazine (ortholog); 4,4'-sulfonyldiphenol (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

leydig cell tumor 10 kDa protein; LOC288913; similar to LEYDIG CELL TUMOR 10 KD PROTEIN

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	40,819,830 - 40,822,609 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	19	23,914,965 - 23,919,149 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	23,915,013 - 23,917,821 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	30,736,073 - 30,738,858 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	31,390,482 - 31,393,267 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	33,613,229 - 33,616,022 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	25,355,815 - 25,358,594 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	25,355,815 - 25,358,594 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	36,332,003 - 36,334,782 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	25,598,805 - 25,601,584 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	23,463,906 - 23,466,685 (+)	NCBI		Celera
RGSC_v3.1	19	25,603,630 - 25,606,410 (+)	NCBI
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chloropicrin (ISO)

cobalt dichloride (ISO)

folic acid (ISO)

methylparaben (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Nucleotide and (derived) amino acid sequence of a novel peptide from a rat (hypercalcemic) Leydig cell tumor.	Rabbani SA, etal., Biochim Biophys Acta 1992 Dec 29;1171(2):229-30.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

C19h19orf53
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	40,819,830 - 40,822,609 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	19	23,914,965 - 23,919,149 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	23,915,013 - 23,917,821 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	30,736,073 - 30,738,858 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	31,390,482 - 31,393,267 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	33,613,229 - 33,616,022 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	25,355,815 - 25,358,594 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	25,355,815 - 25,358,594 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	36,332,003 - 36,334,782 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	25,598,805 - 25,601,584 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	23,463,906 - 23,466,685 (+)	NCBI		Celera
RGSC_v3.1	19	25,603,630 - 25,606,410 (+)	NCBI
Cytogenetic Map	19	q11	NCBI

C19orf53
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	13,774,456 - 13,778,773 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	13,774,454 - 13,778,773 (+)	Ensembl			hg38	GRCh38
GRCh37	19	13,885,270 - 13,889,587 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	13,746,257 - 13,750,587 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	13,779,045 - 13,783,371 (+)	NCBI		Celera
Cytogenetic Map	19	p13.13	NCBI
HuRef	19	13,456,894 - 13,461,220 (+)	NCBI		HuRef
CHM1_1	19	13,885,760 - 13,890,089 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	13,900,656 - 13,904,974 (+)	NCBI		T2T-CHM13v2.0

D8Ertd738e
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	84,972,862 - 84,978,340 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	84,972,867 - 84,976,348 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	84,246,233 - 84,251,711 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	84,246,238 - 84,249,719 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	86,770,134 - 86,773,660 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	87,136,349 - 87,139,815 (-)	NCBI		MGSCv36	mm8
Celera	8	88,548,477 - 88,551,958 (-)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI
cM Map	8	40.72	NCBI

LOC102005462
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	32,590,287 - 32,592,465 (+)	Ensembl
ChiLan1.0	NW_004955415	32,590,287 - 32,592,465 (+)	NCBI	ChiLan1.0	ChiLan1.0

C20H19orf53
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	18,703,397 - 18,707,435 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	17,704,276 - 17,708,325 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	13,336,420 - 13,340,471 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	14,068,708 - 14,073,406 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	14,068,721 - 14,073,406 (+)	Ensembl			panPan2	panpan1.1

C20H19orf53
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	48,648,620 - 48,651,741 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	48,648,623 - 48,651,506 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	48,522,576 - 48,525,508 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	49,166,750 - 49,169,682 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	49,164,933 - 49,169,636 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	48,377,174 - 48,380,122 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	48,804,287 - 48,807,231 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	49,047,380 - 49,050,324 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH19orf53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	207,817,505 - 207,820,596 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	2,533,717 - 2,537,457 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	2,534,156 - 2,536,473 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C2H19orf53
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	65,342,498 - 65,346,439 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	65,342,493 - 65,346,460 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	65,669,732 - 65,673,690 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C6H19orf53
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	12,432,532 - 12,437,133 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	12,433,130 - 12,437,131 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666074	7,250,499 - 7,255,524 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH19orf53
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624901	1,111,360 - 1,116,702 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624901	1,111,333 - 1,116,703 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C17H19orf53
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	16,042,365 - 16,046,686 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C19h19orf53
69 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	265
Count of miRNA genes:	168
Interacting mature miRNAs:	209
Transcripts:	ENSRNOT00000072494
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	31287532	51431640	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	30099383	47207961	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_198728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC088453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X62277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072494 ⟹ ENSRNOP00000066410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	23,915,013 - 23,917,821 (+)	Ensembl
Rnor_6.0 Ensembl	19	25,355,815 - 25,358,594 (-)	Ensembl

RefSeq Acc Id:

NM_198728 ⟹ NP_942023

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	40,819,830 - 40,822,609 (+)	NCBI
mRatBN7.2	19	23,915,031 - 23,917,806 (+)	NCBI
Rnor_6.0	19	25,355,815 - 25,358,594 (-)	NCBI
Rnor_5.0	19	36,332,003 - 36,334,782 (-)	NCBI
RGSC_v3.4	19	25,598,805 - 25,601,584 (+)	RGD
Celera	19	23,463,906 - 23,466,685 (+)	RGD

Sequence:

show sequence

TGGAACATGGCGCAGGGACAACGCAAGTTCCAGGCGCAGAAACCTAAAAGCAAGGCGGCGGCGG
CGGAGCGGAGCCGTGGGCCGCGGAAAGGCGGTCGAGTCATCGGTCCCAAGAAGGCGCGCGTTGT
GCAGCAGCAAAAGTTGAAGAAGAGCCTGGAAGTAGGGATCCGGAAGAAGATTGAGCATGATGTG
GTGATGAAGGCCAGCTCCAGCCTGCCTAAGAAGCTTGCGCTGCTGAAGGGAGCATCAAAGAAGA
CAGGGGCCACCCCTGGCAAGACACCATCCTGAAGGCACTGGGACTTTGCAGGTGACCCCACAGG
CTGGCTGGACTTGAGGGAAGATCCTGCTCCAGTCCTGTTGGACCTTGGAACAGCAGGCAATGGC
AAAAGCTCCAGGCTAGCTCCCCAGTGCTGAAGAGACTCGCTCCCTCTGCTGCTGTGACGGGGTC
TGGCTGTTGTCTCTCCATCAGGGCAGTGCAGAGAGAGTGTTCGTGACTAGATGGTAATACTCTC
TCCCTAGGTGCTGGGCCCCCACCCCAGTCATCTAATGTCAGCCATCATTGTCTGTATCTCCAGT
GAGGCACCACCTCCTCCTGTCACACCAGTAATCAGAGCCACTTGGGGACGCTCCAGCGATATCC
AATAAAGCTGTGTGCACAGAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_942023	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88453	(Get FASTA)	NCBI Sequence Viewer
	CAA44167	(Get FASTA)	NCBI Sequence Viewer
	EDL92229	(Get FASTA)	NCBI Sequence Viewer
	EDL92230	(Get FASTA)	NCBI Sequence Viewer
	Q05310	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_942023 ⟸ NM_198728
- UniProtKB:	Q05310 (UniProtKB/Swiss-Prot), A6IYA1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQGQRKFQAQKPKSKAAAAERSRGPRKGGRVIGPKKARVVQQQKLKKSLEVGIRKKIEHDVVM KASSSLPKKLALLKGASKKTGATPGKTPS hide sequence

Ensembl Acc Id:

ENSRNOP00000066410 ⟸ ENSRNOT00000072494

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q05310-F1-model_v2	AlphaFold	Q05310	1-93	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701016

Promoter ID:

EPDNEW_R11540

Type:

multiple initiation site

Name:

LOC288913_1

Description:

similar to LEYDIG CELL TUMOR 10 KD PROTEIN

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	25,358,604 - 25,358,664	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735128	AgrOrtholog
BioCyc Gene	G2FUF-6098	BioCyc
Ensembl Genes	ENSRNOG00000049931	Ensembl
InterPro	UPF0390	UniProtKB/Swiss-Prot
KEGG Report	rno:288913	UniProtKB/Swiss-Prot
NCBI Gene	288913	ENTREZGENE
PANTHER	LEYDIG CELL TUMOR 10 KDA PROTEIN HOMOLOG	UniProtKB/Swiss-Prot
	PTHR16967	UniProtKB/Swiss-Prot
Pfam	DUF2462	UniProtKB/Swiss-Prot
PhenoGen	C19h19orf53	PhenoGen
RatGTEx	ENSRNOG00000049931	RatGTEx
UniProt	A6IYA1	ENTREZGENE, UniProtKB/TrEMBL
	L10K_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-04	C19h19orf53	similar to human chromosome 19 open reading frame 53	LOC288913	similar to LEYDIG CELL TUMOR 10 KD PROTEIN	Name and Symbol changed	629549	APPROVED
2005-09-30	LOC288913				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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