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Gene: Ica1l (islet cell autoantigen 1-like) Rattus norvegicus

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Symbol:

Ica1l

Name:

islet cell autoantigen 1-like

RGD ID:

735110

Description:

Predicted to enable protein domain specific binding activity. Predicted to be involved in regulation of transport. Predicted to act upstream of or within spermatid development. Predicted to be located in acrosomal vesicle. Predicted to be active in Golgi apparatus. Orthologous to human ICA1L (islet cell autoantigen 1 like); INTERACTS WITH bisphenol A; cadmium dichloride; fenvalerate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

amyotrophic lateral sclerosis 2 chromosomal region candidate gene 15 protein homolog; Ica69-related protein; islet cell autoantigen 1, 69kDa-like; islet cell autoantigen 1-like protein; LOC316432

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ICA1L (islet cell autoantigen 1 like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ica1l (islet cell autoantigen 1-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ica1l (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ICA1L (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ICA1L (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ica1l (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ICA1L (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ICA1L (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ica1l (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ICA1L (islet cell autoantigen 1 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ica1l (islet cell autoantigen 1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ical1 (islet cell autoantigen 1-like)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	ICA69	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ric-19	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	68,906,148 - 68,964,078 (-)	NCBI		GRCr8
mRatBN7.2	9	61,410,959 - 61,469,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,412,091 - 61,470,134 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	69,914,281 - 69,950,389 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,029,835 - 75,065,943 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,348,547 - 73,384,653 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	66,788,094 - 66,848,958 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	66,790,047 - 66,845,403 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	58,549,961 - 58,588,146 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	58,696,942 - 58,735,128 (-)	NCBI
Celera	9	58,848,507 - 58,883,908 (-)	NCBI		Celera
Cytogenetic Map	9	q31-q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ica1l	Rat	autoimmune lymphoproliferative syndrome type 2B		ISO	ICA1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autoimmune lymphoproliferative syndrome type 2B	ClinVar	PMID:11343122 more ...
Ica1l	Rat	Autoimmune Lymphoproliferative Syndrome, Type V		ISO	ICA1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autoimmune lymphoproliferative syndrome type V	ClinVar	PMID:11343122 more ...
Ica1l	Rat	common variable immunodeficiency 1		ISO	ICA1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Immunodeficiency more ...	ClinVar	PMID:11343122 more ...
Ica1l	Rat	Neurodevelopmental Disorders		ISO	ICA1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Ica1l	Rat	primary pulmonary hypertension		ISO	ICA1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary pulmonary hypertension	ClinVar	PMID:28492532 and PMID:31727138
Ica1l	Rat	Pulmonary Arterial Hypertension		ISO	ICA1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Pulmonary arterial hypertension	ClinVar	PMID:32581362

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ica1l	Rat	coronary artery disease		ISO	ICA1L (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:34961328

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ica1l	Rat	1,2-dichloroethane	increases expression	ISO	Ica1l (Mus musculus)	6480464	ethylene dichloride results in increased expression of ICA1L mRNA	CTD	PMID:28960355
Ica1l	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Ica1l (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ICA1L mRNA	CTD	PMID:21570461
Ica1l	Rat	aflatoxin B1	increases methylation	ISO	ICA1L (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of ICA1L gene	CTD	PMID:27153756
Ica1l	Rat	aldehydo-D-glucose	multiple interactions	ISO	Ica1l (Mus musculus)	6480464	fucoxanthin inhibits the reaction [Glucose results in decreased expression of ICA1L mRNA]	CTD	PMID:33448797
Ica1l	Rat	aldehydo-D-glucose	decreases expression	ISO	Ica1l (Mus musculus)	6480464	Glucose results in decreased expression of ICA1L mRNA	CTD	PMID:33448797
Ica1l	Rat	all-trans-retinoic acid	decreases expression	ISO	ICA1L (Homo sapiens)	6480464	Tretinoin results in decreased expression of ICA1L mRNA	CTD	PMID:33167477
Ica1l	Rat	all-trans-retinoic acid	increases expression	ISO	Ica1l (Mus musculus)	6480464	Tretinoin results in increased expression of ICA1L mRNA	CTD	PMID:36189433
Ica1l	Rat	antirheumatic drug	increases expression	ISO	ICA1L (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of ICA1L mRNA	CTD	PMID:24449571
Ica1l	Rat	arsane	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ICA1L mRNA	CTD	PMID:39836092
Ica1l	Rat	arsenic atom	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ICA1L mRNA	CTD	PMID:39836092
Ica1l	Rat	benzo[a]pyrene	increases methylation	ISO	ICA1L (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of ICA1L promoter	CTD	PMID:27901495
Ica1l	Rat	benzo[a]pyrene	affects methylation	ISO	ICA1L (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of ICA1L 5' UTR	CTD	PMID:27901495
Ica1l	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ICA1L mRNA	CTD	PMID:25181051
Ica1l	Rat	bisphenol A	decreases expression	ISO	Ica1l (Mus musculus)	6480464	bisphenol A results in decreased expression of ICA1L mRNA	CTD	PMID:32156529
Ica1l	Rat	butan-1-ol	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[[Gasoline co-treated with 1-Butanol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in decreased expression of ICA1L mRNA	CTD	PMID:29432896
Ica1l	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of ICA1L mRNA	CTD	PMID:33453195
Ica1l	Rat	CGP 52608	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to ICA1L gene]	CTD	PMID:28238834
Ica1l	Rat	choline	multiple interactions	ISO	Ica1l (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of ICA1L gene	CTD	PMID:20938992
Ica1l	Rat	cisplatin	decreases expression	ISO	ICA1L (Homo sapiens)	6480464	Cisplatin results in decreased expression of ICA1L mRNA	CTD	PMID:27392435
Ica1l	Rat	D-glucose	decreases expression	ISO	Ica1l (Mus musculus)	6480464	Glucose results in decreased expression of ICA1L mRNA	CTD	PMID:33448797
Ica1l	Rat	D-glucose	multiple interactions	ISO	Ica1l (Mus musculus)	6480464	fucoxanthin inhibits the reaction [Glucose results in decreased expression of ICA1L mRNA]	CTD	PMID:33448797
Ica1l	Rat	dorsomorphin	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ICA1L mRNA	CTD	PMID:27188386
Ica1l	Rat	doxorubicin	decreases expression	ISO	ICA1L (Homo sapiens)	6480464	Doxorubicin results in decreased expression of ICA1L mRNA	CTD	PMID:29803840
Ica1l	Rat	fenvalerate	increases expression	EXP		6480464	fenvalerate results in increased expression of ICA1L mRNA	CTD	PMID:30307764
Ica1l	Rat	folic acid	multiple interactions	ISO	Ica1l (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of ICA1L gene	CTD	PMID:20938992
Ica1l	Rat	fucoxanthin	multiple interactions	ISO	Ica1l (Mus musculus)	6480464	fucoxanthin inhibits the reaction [Glucose results in decreased expression of ICA1L mRNA]	CTD	PMID:33448797
Ica1l	Rat	glucose	decreases expression	ISO	Ica1l (Mus musculus)	6480464	Glucose results in decreased expression of ICA1L mRNA	CTD	PMID:33448797
Ica1l	Rat	glucose	multiple interactions	ISO	Ica1l (Mus musculus)	6480464	fucoxanthin inhibits the reaction [Glucose results in decreased expression of ICA1L mRNA]	CTD	PMID:33448797
Ica1l	Rat	hydrogen peroxide	affects expression	ISO	ICA1L (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of ICA1L mRNA	CTD	PMID:21179406
Ica1l	Rat	hydrogen peroxide	decreases expression	EXP		6480464	Hydrogen Peroxide results in decreased expression of ICA1L protein	CTD	PMID:23178681
Ica1l	Rat	L-methionine	multiple interactions	ISO	Ica1l (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of ICA1L gene	CTD	PMID:20938992
Ica1l	Rat	lead(0)	decreases expression	ISO	ICA1L (Homo sapiens)	6480464	Lead results in decreased expression of ICA1L mRNA	CTD	PMID:19921347
Ica1l	Rat	manganese atom	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ICA1L mRNA and [manganese chloride results in increased abundance of Manganese] which results in decreased expression of ICA1L mRNA	CTD	PMID:39836092
Ica1l	Rat	manganese(0)	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ICA1L mRNA and [manganese chloride results in increased abundance of Manganese] which results in decreased expression of ICA1L mRNA	CTD	PMID:39836092
Ica1l	Rat	manganese(II) chloride	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ICA1L mRNA and [manganese chloride results in increased abundance of Manganese] which results in decreased expression of ICA1L mRNA	CTD	PMID:39836092
Ica1l	Rat	methylmercury chloride	decreases expression	ISO	ICA1L (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of ICA1L mRNA	CTD	PMID:26272509 and PMID:28001369
Ica1l	Rat	methylmercury chloride	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ICA1L mRNA	CTD	PMID:27188386
Ica1l	Rat	p-chloromercuribenzoic acid	increases expression	ISO	ICA1L (Homo sapiens)	6480464	p-Chloromercuribenzoic Acid results in increased expression of ICA1L mRNA	CTD	PMID:27188386
Ica1l	Rat	paracetamol	affects expression	ISO	Ica1l (Mus musculus)	6480464	Acetaminophen affects the expression of ICA1L mRNA	CTD	PMID:17562736
Ica1l	Rat	paraquat	decreases expression	EXP		6480464	Paraquat results in decreased expression of ICA1L mRNA	CTD	PMID:32680482
Ica1l	Rat	pentanal	decreases expression	ISO	ICA1L (Homo sapiens)	6480464	pentanal results in decreased expression of ICA1L mRNA	CTD	PMID:26079696
Ica1l	Rat	perfluorohexanesulfonic acid	increases expression	ISO	Ica1l (Mus musculus)	6480464	perfluorohexanesulfonic acid results in increased expression of ICA1L mRNA	CTD	PMID:37995155
Ica1l	Rat	SB 431542	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ICA1L mRNA	CTD	PMID:27188386
Ica1l	Rat	sodium arsenite	multiple interactions	ISO	ICA1L (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ICA1L mRNA	CTD	PMID:39836092
Ica1l	Rat	sodium arsenite	decreases expression	ISO	Ica1l (Mus musculus)	6480464	sodium arsenite results in decreased expression of ICA1L mRNA	CTD	PMID:37682722
Ica1l	Rat	sunitinib	decreases expression	ISO	ICA1L (Homo sapiens)	6480464	Sunitinib results in decreased expression of ICA1L mRNA	CTD	PMID:31533062
Ica1l	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of ICA1L mRNA	CTD	PMID:33387578
Ica1l	Rat	triphenyl phosphate	affects expression	ISO	ICA1L (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ICA1L mRNA	CTD	PMID:37042841
Ica1l	Rat	triptonide	increases expression	ISO	Ica1l (Mus musculus)	6480464	triptonide results in increased expression of ICA1L mRNA	CTD	PMID:33045310
Ica1l	Rat	valproic acid	affects expression	ISO	Ica1l (Mus musculus)	6480464	Valproic Acid affects the expression of ICA1L mRNA	CTD	PMID:17292431

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ica1l	Rat	regulation of transport	involved_in	IBA	PANTHER:PTN000807380 and WB:WBGene00004368	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ica1l	Rat	spermatid development	acts_upstream_of_or_within	ISO	Ica1l (Mus musculus)	1624291	MGI:5806150 PMID:26306493	RGD	PMID:26306493

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ica1l	Rat	acrosomal vesicle	located_in	ISO	Ica1l (Mus musculus)	1624291	PMID:26306493	RGD	PMID:26306493
Ica1l	Rat	cytoplasm	located_in	IEA	ARBA:ARBA00026971	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Ica1l	Rat	endomembrane system	located_in	IEA	ARBA:ARBA00028953	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Ica1l	Rat	Golgi apparatus	is_active_in	IBA	PANTHER:PTN000807380 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ica1l	Rat	intracellular membrane-bounded organelle	located_in	IEA	ARBA:ARBA00029085	1600115	GO_REF:0000117	UniProt	GO_REF:0000117

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ica1l	Rat	protein binding	enables	ISO	ICA1L (Homo sapiens) and UniProtKB:Q8NDH6-2	1624291	UniProtKB:O14901 more ...	RGD	PMID:32296183 and PMID:32814053
Ica1l	Rat	protein binding	enables	ISO	Ica1l (Mus musculus)	1624291	PR:Q62083 PMID:26306493	RGD	PMID:26306493
Ica1l	Rat	protein binding	enables	ISO	ICA1L (Homo sapiens)	1624291	UniProtKB:Q9BVG8 and PMID:25416956	RGD	PMID:25416956
Ica1l	Rat	protein domain specific binding	enables	IEA	InterPro:IPR010504	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Islet cell autoantigen of 69 kDa is an arfaptin-related protein associated with the Golgi complex of insulinoma INS-1 cells.	Spitzenberger F, etal., J Biol Chem 2003 Jul 11;278(28):26166-73.

PMID:26306493

Ica1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	68,906,148 - 68,964,078 (-)	NCBI		GRCr8
mRatBN7.2	9	61,410,959 - 61,469,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,412,091 - 61,470,134 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	69,914,281 - 69,950,389 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,029,835 - 75,065,943 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,348,547 - 73,384,653 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	66,788,094 - 66,848,958 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	66,790,047 - 66,845,403 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	58,549,961 - 58,588,146 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	58,696,942 - 58,735,128 (-)	NCBI
Celera	9	58,848,507 - 58,883,908 (-)	NCBI		Celera
Cytogenetic Map	9	q31-q32	NCBI

ICA1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	202,773,176 - 202,871,766 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	202,773,150 - 202,871,766 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	203,637,899 - 203,736,489 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	203,346,118 - 203,444,616 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	203,467,301 - 203,561,871	NCBI
Celera	2	197,390,623 - 197,489,058 (-)	NCBI		Celera
Cytogenetic Map	2	q33.2	NCBI
HuRef	2	195,484,776 - 195,583,236 (-)	NCBI		HuRef
CHM1_1	2	203,644,501 - 203,742,964 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	203,254,630 - 203,353,223 (-)	NCBI		T2T-CHM13v2.0

Ica1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	60,024,955 - 60,082,646 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	60,021,649 - 60,082,343 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	59,985,796 - 60,043,481 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	59,982,490 - 60,043,184 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	60,045,912 - 60,099,931 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	59,933,614 - 59,987,633 (-)	NCBI		MGSCv36	mm8
Celera	1	60,504,490 - 60,558,846 (-)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	30.45	NCBI

Ica1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	12,006,306 - 12,085,799 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	11,983,201 - 12,085,870 (+)	NCBI	ChiLan1.0	ChiLan1.0

ICA1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	105,406,392 - 105,475,098 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	105,421,389 - 105,490,094 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	90,034,205 - 90,105,600 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	208,184,023 - 208,252,084 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	208,184,023 - 208,251,254 (-)	Ensembl	panpan1.1		panPan2

ICA1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	11,674,970 - 11,754,931 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	11,678,125 - 11,741,997 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	12,558,653 - 12,638,491 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	11,611,993 - 11,691,866 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	11,613,496 - 11,691,338 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	11,568,391 - 11,648,134 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	11,539,667 - 11,619,487 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	11,533,517 - 11,613,396 (-)	NCBI		UU_Cfam_GSD_1.0

Ica1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	159,877,981 - 159,952,434 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	1,853,868 - 1,902,788 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	1,853,178 - 1,922,684 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ICA1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	106,295,934 - 106,377,579 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	106,293,936 - 106,377,573 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	117,753,375 - 117,827,860 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ICA1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	88,492,255 - 88,609,268 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	88,517,716 - 88,569,031 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	110,776,859 - 110,874,196 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ica1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	13,588,073 - 13,687,250 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624765	13,547,437 - 13,687,641 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ica1l
299 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	29
Count of miRNA genes:	29
Interacting mature miRNAs:	29
Transcripts:	ENSRNOT00000041546
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	49968546	71098346	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	61381434	65691299	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

BF413809

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,425,984 - 61,426,090 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	66,801,989 - 66,802,094	NCBI	Rnor6.0
Rnor_5.0	9	66,613,858 - 66,613,963	UniSTS	Rnor5.0
RGSC_v3.4	9	58,561,730 - 58,561,835	UniSTS	RGSC3.4
Celera	9	58,860,276 - 58,860,381	UniSTS
RH 3.4 Map	9	495.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

RH133804

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,413,720 - 61,413,940 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	66,789,725 - 66,789,944	NCBI	Rnor6.0
Rnor_5.0	9	66,601,594 - 66,601,813	UniSTS	Rnor5.0
RGSC_v3.4	9	58,549,466 - 58,549,685	UniSTS	RGSC3.4
Celera	9	58,848,012 - 58,848,231	UniSTS
RH 3.4 Map	9	496.3	UniSTS
Cytogenetic Map	9	q31	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	9	31	113	71	70	39	25	39	6	178	77	93	45	60	31


RefSeq Transcripts	NM_199400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY491990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041546 ⟹ ENSRNOP00000045103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,412,091 - 61,450,546 (-)	Ensembl
Rnor_6.0 Ensembl	9	66,790,047 - 66,845,403 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094628 ⟹ ENSRNOP00000094417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,412,091 - 61,470,134 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119954 ⟹ ENSRNOP00000076459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,412,091 - 61,470,134 (-)	Ensembl

RefSeq Acc Id:

NM_199400 ⟹ NP_955432

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,692 (-)	NCBI
mRatBN7.2	9	61,412,090 - 61,469,638 (-)	NCBI
Rnor_6.0	9	66,790,220 - 66,825,834 (-)	NCBI
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI
RGSC_v3.4	9	58,549,961 - 58,588,146 (-)	RGD
Celera	9	58,848,507 - 58,883,908 (-)	RGD

Sequence:

show sequence

ATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTAGTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAAAGGAGGATGAGCACGTGGT
TGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTCCATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTTATATCAGAGGAAGAAAATG
AACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTCAAGCTGGCAAAATGATGGGCGCCGCTGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGCCTTGTGCACTCCCCTGTCT
CGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCTGACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGTGGATGAAAGACGCATCACA
GGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAAAGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAGAAAGTGGACTTGCTGGGTG
CTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGAGAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGCTGGCTTTCATCCATATGAC
TTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACTGCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGAG
ATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCTTCACGTGCTAGTGAATGTA
CACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCCAGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTTTGACCTTGGCCTTCATGCT
GATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACACTCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACA
CTCAGATGACGAGCTTCTGAATGCCTGA

hide sequence

RefSeq Acc Id:

XM_006244994 ⟹ XP_006245056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGC
CGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCTTTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTA
GTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAAAGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTC
CATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTTATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTC
AAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGCCTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCT
GACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGTGGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAA
AGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAGAAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGA
GAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGCTGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACT
GCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTC
ACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCTTCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCC
AGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTTTGACCTTGGCCTTCATGCTGATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACAC
TCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATGGCCTCCACATGCTGGATACCCTGCTAGCTACACCCTCAGCCTGGATGCCCCCAACAGTGGTAACCAAGACATGTCAGCCTG
GTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACACTCAGATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGCTTCAGGGGTCTTGAGGAA
CCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACCACACACAGAAGCATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGAGCACCTGAGCAGGCTGTG
GTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATTTTACAAACTCCGCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTTTCTTTGGAAGGTGTTTTA
CACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTATAGTTTGGGGGGTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAACTATAAAAAGCTTTCTCAC
CAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAATTAAGAGAAACGTGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTCATATGCAATCATGGATAC
ATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAAGCCATCATCTGTAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGCTACTTTCTCTACAGAACA
GTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCCAGAAACTTCTATGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTCAACACACACTTGAGCCCA
GAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCATCCCATGTTCTTCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCTATTGGCAGAGGACATAGA
GTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGGCGAAATCATAACTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTAATTTAAGGGTAGTTCTCC
AAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACATCTTAAGTTGTTTATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAAATTACATATAATGTCCAA
GTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTAGAATGCCATCCACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCTGTCAACTGGTGCAAGGGC
TGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAATATCTTCAGTCTTAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAATTCCAGAACACAATATTGT
CATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAGTCTGAGGCTAGGGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGTCTGTGCTACCTCTCTTTG
CGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGAACACTTACCAGAAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAAATGGGTATCTTTTATATC
GAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACTTCACAGAAAGTTAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGAATGGCAGGTCATATGATC
AGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGTTCTAATATCATTAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGGAGCTATATTTCCACTCTG
AATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTTCCTAACTAATAGATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTTCCCTCTCTCTTGAGCGTC
CATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_006244995 ⟹ XP_006245057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,517 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,467 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGC
CGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCTTTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTA
GTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAAAGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTC
CATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTTATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTC
AAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGCCTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCT
GACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGTGGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAA
AGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAGAAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGA
GAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGCTGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACT
GCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTC
ACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCTTCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCC
AGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTTTGACCTTGGCCTTCATGCTGATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACAC
TCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATCCCCCAACAGTGGTAACCAAGACATGTCAGCCTGGTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCCAT
TGGACACTCAGATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGCTTCAGGGGTCTTGAGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACC
ACACACAGAAGCATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGAGCACCTGAGCAGGCTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATT
TTACAAACTCCGCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTTTCTTTGGAAGGTGTTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTA
TAGTTTGGGGGGTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAACTATAAAAAGCTTTCTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAAT
TAAGAGAAACGTGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTCATATGCAATCATGGATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAA
GCCATCATCTGTAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGCTACTTTCTCTACAGAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCC
AGAAACTTCTATGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTCAACACACACTTGAGCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCA
TCCCATGTTCTTCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCTATTGGCAGAGGACATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGG
CGAAATCATAACTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTAATTTAAGGGTAGTTCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACAT
CTTAAGTTGTTTATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAAATTACATATAATGTCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTA
GAATGCCATCCACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCTGTCAACTGGTGCAAGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAAT
ATCTTCAGTCTTAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAATTCCAGAACACAATATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAG
TCTGAGGCTAGGGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGTCTGTGCTACCTCTCTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGA
ACACTTACCAGAAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAAATGGGTATCTTTTATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACT
TCACAGAAAGTTAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGAATGGCAGGTCATATGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGT
TCTAATATCATTAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGGAGCTATATTTCCACTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTT
CCTAACTAATAGATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTTCCCTCTCTCTTGAGCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_006244999 ⟹ XP_006245061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGCCGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCT
TTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTAGTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAA
AGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTCCATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTT
ATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTCAAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGC
CTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCTGACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGT
GGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAAAGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAG
AAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGAGAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGC
TGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACTGCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTT
TGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCT
TCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCCAGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTT
TGACCTTGGCCTTCATGCTGATGGAGCTTTCAACACCCCCAACAGTGGTAACCAAGACATGTCAGCCTGGTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACACTCAG
ATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGCTTCAGGGGTCTTGAGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACCACACACAGAAG
CATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGAGCACCTGAGCAGGCTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATTTTACAAACTCC
GCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTTTCTTTGGAAGGTGTTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTATAGTTTGGGGG
GTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAACTATAAAAAGCTTTCTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAATTAAGAGAAACG
TGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTCATATGCAATCATGGATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAAGCCATCATCTG
TAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGCTACTTTCTCTACAGAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCCAGAAACTTCTA
TGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTCAACACACACTTGAGCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCATCCCATGTTCT
TCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCTATTGGCAGAGGACATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGGCGAAATCATAA
CTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTAATTTAAGGGTAGTTCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACATCTTAAGTTGTT
TATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAAATTACATATAATGTCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTAGAATGCCATCC
ACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCTGTCAACTGGTGCAAGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAATATCTTCAGTCT
TAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAATTCCAGAACACAATATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAGTCTGAGGCTAG
GGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGTCTGTGCTACCTCTCTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGAACACTTACCAG
AAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAAATGGGTATCTTTTATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACTTCACAGAAAGT
TAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGAATGGCAGGTCATATGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGTTCTAATATCAT
TAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGGAGCTATATTTCCACTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTTCCTAACTAATA
GATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTTCCCTCTCTCTTGAGCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_008767111 ⟹ XP_008765333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,521 (-)	NCBI
mRatBN7.2	9	61,412,088 - 61,469,470 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGCCGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCT
TTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTAGTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAA
AGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTTATATCAGAGGAAGAAAAT
GAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTCAAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGCCTTGTGCACTCCCCTGTC
TCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCTGACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGTGGATGAAAGACGCATCAC
AGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAAAGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAGAAAGTGGACTTGCTGGGT
GCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGAGAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGCTGGCTTTCATCCATATGA
CTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACTGCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGA
GATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCTTCACGTGCTAGTGAATGT
ACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCCAGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTTTGACCTTGGCCTTCATGC
TGATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACACTCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATGGCCTCCACATGCTGGATACCCTGCTAGCTACACCC
TCAGCCTGGATGCCCCCAACAGTGGTAACCAAGACATGTCAGCCTGGTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACACTCAGATGACGAGCTTCTGAATGCCTGA
CTGATGTCATGGTGACTGACATCACAGCTTCAGGGGTCTTGAGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACCACACACAGAAGCATGTGTTCAGGATAGAACGTCT
ACCAGCCAACTCTAGTCACAGGATTGGAGCACCTGAGCAGGCTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATTTTACAAACTCCGCAATACTGAGAAACCAAACTTA
CGGCTGAATCACAGAAGCATGGTGTGTTTCTTTGGAAGGTGTTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTATAGTTTGGGGGGTTTTCTTGATAGTGTCAGGTGT
TTTCTGTTGTGGGGACCAGCACTAGAACTATAAAAAGCTTTCTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAATTAAGAGAAACGTGGGTTTGCTTTTCTGTACCTGG
TAACTAAATGCAATGTTACCGTTCATTCATATGCAATCATGGATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAAGCCATCATCTGTAGAAATGGGAAAAGGAATCTAC
AGGTCTGTTTCACTGACTCTTGCAGTGCTACTTTCTCTACAGAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCCAGAAACTTCTATGTGAACATGCAAGACACTTTCA
AATGCCATCATAATAGTTGTATTTTCTCAACACACACTTGAGCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCATCCCATGTTCTTCCTTTCAGTCTAACTCCCACAG
TGCCATTAGAGAGTACTAAGCAAAAGCTATTGGCAGAGGACATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGGCGAAATCATAACTGCTGGATTGCTACTCCTTCAG
CTTCCTGTCCTTTCTTGTCCACCCTTTAATTTAAGGGTAGTTCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACATCTTAAGTTGTTTATTGTGGTTTTTATGGGCTTCT
AGTCATTAGCAGGTTGATTCAAGTTCAAATTACATATAATGTCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTAGAATGCCATCCACTCCACACATTCAGAAACCTGG
CCTAACCCTGTGGAACTGACCCTGAGCTGTCAACTGGTGCAAGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAATATCTTCAGTCTTAATGAACTATTACCTCTTCAAA
AGCACTTCCCTTCTGTTCAGTGAAAAATTCCAGAACACAATATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAGTCTGAGGCTAGGGTCCAGAGCAACCACTGCCATT
AACCTCAAGAAGCAATAACTTACACTGTCTGTGCTACCTCTCTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGAACACTTACCAGAAAGACAGCTGATGGGGAAGCAT
AGGTTGTCCCAGAGCAACTTTGTCAAAAATGGGTATCTTTTATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACTTCACAGAAAGTTAGACAGACCCAAGCACAGCCAC
ATTAGCCTTCTCCTCAAGAGACACAAGAATGGCAGGTCATATGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGTTCTAATATCATTAGAAACAAATTGTATTTAAAAT
TAGATTTCATTATTTGCACATTGAAAGGAGCTATATTTCCACTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTTCCTAACTAATAGATCTAGAAATATACAGGGCTTA
CAGCATTAGGAAGCTAGTTTAATGTGTTCCCTCTCTCTTGAGCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_017596461 ⟹ XP_017451950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGCCGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCT
TTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTAGTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAA
AGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTCCATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTT
ATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTCAAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGC
CTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCTGACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGT
GGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAAAGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAG
AAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGAGAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGC
TGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACTGCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTT
TGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCT
TCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCCAGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTT
TGACCTTGGCCTTCATGCTGATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACACTCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATGGCCTCCACATGCTGGAT
ACCCTGCTAGCTACACCCTCAGCCTGGATGACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACACTCAGATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGCTTCAG
GGGTCTTGAGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACCACACACAGAAGCATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGAGCACC
TGAGCAGGCTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATTTTACAAACTCCGCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTTTCTTT
GGAAGGTGTTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTATAGTTTGGGGGGTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAACTATAA
AAAGCTTTCTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAATTAAGAGAAACGTGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTCATATG
CAATCATGGATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAAGCCATCATCTGTAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGCTACTT
TCTCTACAGAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCCAGAAACTTCTATGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTCAACAC
ACACTTGAGCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCATCCCATGTTCTTCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCTATTGG
CAGAGGACATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGGCGAAATCATAACTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTAATTTA
AGGGTAGTTCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACATCTTAAGTTGTTTATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAAATTAC
ATATAATGTCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTAGAATGCCATCCACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCTGTCAA
CTGGTGCAAGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAATATCTTCAGTCTTAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAATTCCAG
AACACAATATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAGTCTGAGGCTAGGGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGTCTGTG
CTACCTCTCTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGAACACTTACCAGAAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAAATGGG
TATCTTTTATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACTTCACAGAAAGTTAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGAATGGC
AGGTCATATGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGTTCTAATATCATTAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGGAGCTA
TATTTCCACTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTTCCTAACTAATAGATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTTCCCTC
TCTCTTGAGCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_017596464 ⟹ XP_017451953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,964,078 (-)	NCBI
mRatBN7.2	9	61,412,088 - 61,469,884 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,848,958 (-)	NCBI

Sequence:

show sequence

CAAAGGTGTACACCACCATGCCCAACTCTGCCTTACTCATTTCTTAAGGCACTAGTATAAGCCA
TTTAAAGACCTTGATCAACCCTGTATAAATAGGAATATCCTGAGGAAATCCTGATGACTGCCCAGAAGTATCACTAGTTCAGCATGGTTTGCCAAGAGACATTTCTACATTCGGTGGTGCTGACTTCC
TGCTGTGTTCCTTGGCTGTTTCAGGTAGAGCAGGAAAAGGTAACTTGTCTCCTGAATTCAGTTCTAACTGTTGGAGGAAGCATTACTTAAAATAGTCCAAGGAACAAACATACCACTGACATAGCAAT
ACCCTAAACACACTCCTGACATGGCAATACCCTAAACATACCACTGTAATGGTCATACCTTAAACATACCATTGTAATGATAAGACCTTAAAAGTGGTTTTGGAGTCATTTGTTCCTTGGGGGAGGGG
CGTCTAATTCTGTTTAGGTATGATGTGTGAGCTGGCCACTAGGCCTTTTTGTTACAGTCATTGATAGAATAGACATTGATTAGGGATCTAAGTTTGCACTGGACACAGTTCTAGGAGACAAGGCTGCA
GAAATGCATAAGGATAGAACAGCAAAGCATCTAATGGAAGAAAACTGGGATAAACATGCTAGTGTTGTGTGACTTCCTAGGGAGATGTAAACAGCATCTGTTCAGGGTAGACCAGGCACTGACAGTGG
ACCAAAGCAGTGAGTTTAGCAGGTAACTTTCTAGATGCATAGGTGAGGGTAACTTACAGGATCATGAATGATACAATGATAGTCACCAAAAAGTGCACCTCAACACAGTGACAACTCAAAAGTTACAT
CCCTAGAGCTGCCTGCTCACTGGCCCCAGCCACACTCAACACTCTTCTCAGAAGCAACTGTTTGGCTTCCCTAACCGTGGATCTTGGGTATTTCAGGAGCCTCTTGAGTCTTGTGAGACTATTTTCCA
AAAAGGGATGGTTGAATTCTGAAGAAACAGATAGCTGGTTAGGAGGCATCCCAGACAATACTGAGAGTTTTCTGACAAACTCTTGCCTTGCCCTCCCCAACAATGGGATGGACATATACCTAAGGCAA
AGCAAGGGGAGCTTAGTTGCCATGCAGGCATAACAGTTCAAACACGGAAGGAGGAATTGAGATTCATGATGGCAACAGAATGTCAGCTAGGAGGCTACAACCCTGTGCCTTCAGCAGGCTGCAGGTGC
CTGTGAGAAGCTGCAAATGTTAGGACTTTGCTCTTAACACACCTGAGAGAGCAGTGTTGCAGGTGGAACACTAGTTAAGCTTTGGGGTGCCAACCTTGAGTTTGAGTGTGCAGACAGGCAGAGGCTGG
AGTCTGTCTCTGGTCAGAACTTGGAGGCTGAAGACAGCTGAATGAATTCCCATCTGCAGCCATAGCGTGGAATCCCAAGGCTCAGACAGGAAGGAGGCTTCCTTGCAGCTACAGGTCAAGTCCTGGAG
GCTGGAGCATCATGAACCTCCCAAGGTTAGATCCCTTTGAAGACAGTATTCTTTCTCCAGGAACATCTAGAGCTGGCTGAGCCAGCCTGAGTCCAGCCTTCCTCTGAGAGCAATCTGCCAAAACTGAA
GAAGCCCTTGCCTGCTCTGCTCTATAGAGCCAGGCGGGCCCCAGTTGGCTGAATCTGTGTGCATACAACCAGGCTTAGTGACCCAGCCCTTTAATTCCAACACTCCTGAAGACCGAGTCTGGTCTGCA
GAGTGAGTTTCCAGCATAGCCAGAACTAAATGGTGAGACCTTGTCTCAGGAAAACAACAACAAACACCCAAACTTTTAAAATGGGTCAATCAGGGAAGAGCTGTGCAAGTGTTAAAACCTGGAGCTGG
AGGGGAGCTATCTAATACATTCTCAACCAGGTCAGTGGGTTGCTTTCTAACCCTGTCCAGTAGGGAAGTAGGTTCTGAACTGGTTATAGGGCACCCAGAAGTTTCTGTCAGCTTCCAGCTGTTGTGGA
GGGAGGACAGAGGGATATTCGAGTCATCCTACAGGAACTGCTGCAGCTGTCTGTCAGGGACTTTGCAGCTTCCATCCCAGTGGCCTTTAACACAAGGTCAACAGCTTGGACTGCAGCTCACTCTTGCC
TTGGTTGTACTAGAGGGTCCTCCACATCAGTTTTTGCCTGGCTTTAGTCTTTTTCATTTTGCTCACCTGTTGCTTCGATGACAGCTAGACTCATTCAGTAGATTGCTGTGACTGCCACTAACTCCTTG
CCCTGGGCTCCAGGCTGTTTAAAAGCTCTCTGGAGCCTTAGAAAGAGCTGGGGCCCCACCTACCCATCTCAGTATGACCTAGGAAAGATCCGGAGAACTGCAGTTGACCAATCATACCTGCTTCCTGC
TAATTCATATTCCTTCAAGGATTTGGACTTTGAGGAGCAGGAGAAACTATTGACACTTTCCTTGGGTGTGGGGAGTCCCAAAATTGCATATAATTTCAAGTATTTGTCCATTATTTGAAATCCAAAAT
AGCTGTGTAAGAATTTAAAGGTACCTTAAAATTTTTAGTTCAAATCAGCCCGCTATAGAAGTATCTTTTCTAGTCTAAAACTTAAAAGCTTTACAGACTACTTTGTAATTAATATTTAGTCTGGACCC
TTACATCATGTAGTTATCTATGATCCATCAGATAGTTGCCCCAAGAGTTAAGCGGGGTTTTTCCCCCATTGCCAGCCTATATGTCACATATACATGAATTAGTATATTGTAAACCTTCAGGAAAGTTG
AATTTGGACGCCAACTTGAAAAGGAAAGCACTTTGAGTTCATTACTCCTTACCAGTAATAATTTTCCTTTCTACTGATTTCCATTTCTTTTCCCTGAGGTTTTTTTAAGCTCAGAATTTGCTTTTTAC
TCTTGAAAACAGGTTTATCATTCACTCTCACTCTCGGAACTGTAGTTCTGTATATGGCATTTGAAGTCAGTTATTAACAGTCGTCCCTCTTAAACCTTTAAAAATGAGTGTGAAGACCCGCGTGAACA
TTTGCCTCGCGCTGAGCCCTAGTACAAAGTGGCGACAAGACGCAGAGGCAGCGCGGGGAATGCGGGAGCTGGGAGGCAAGGCCAAGCCGGTCTTCCGCGCACCCACCTCGGATGCCCCGGCTCAACGA
GGGTCTCTGGTTCAGCGCCTGGCGTCCGTCACTTCTCACCGGCAAGCGACAGCCAGGGCCCGCGCCCTCCGCCGGGGGATACAGTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCA
GAAGACAGCCAGTCAGTAGTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAAAGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAA
ACTTGAGGTTTTTCACTCCATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTTATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAG
CAGAGCGGGATGCAACTCAAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGCCTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTC
AGTCAGAGGGCCATCTCTGACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGTGGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACA
AGTGGAGAAGTTCAGAAAAGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAGAAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACT
CACTCGCTACCTACCAGAGAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGCTGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGAC
ACTCCAGGCAATCTCACTGCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACG
CGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCTTCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGA
GCCCCAGCCTCATGTGCCAGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTTTGACCTTGGCCTTCATGCTGATGGAGCTTTCAACAGCTGGGCTTCC
CAAGAGGGATCAGAACACTCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATGGCCTCCACATGCTGGATACCCTGCTAGCTACACCCTCAGCCTGGATGCCCCCAACAGTGGTAA
CCAAGACATGTCAGCCTGGTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACACTCAGATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGC
TTCAGGGGTCTTGAGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACCACACACAGAAGCATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGA
GCACCTGAGCAGGCTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATTTTACAAACTCCGCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTT
TCTTTGGAAGGTGTTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTATAGTTTGGGGGGTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAAC
TATAAAAAGCTTTCTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAATTAAGAGAAACGTGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTC
ATATGCAATCATGGATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAAGCCATCATCTGTAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGC
TACTTTCTCTACAGAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCCAGAAACTTCTATGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTC
AACACACACTTGAGCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCATCCCATGTTCTTCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCT
ATTGGCAGAGGACATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGGCGAAATCATAACTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTA
ATTTAAGGGTAGTTCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACATCTTAAGTTGTTTATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAA
ATTACATATAATGTCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTAGAATGCCATCCACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCT
GTCAACTGGTGCAAGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAATATCTTCAGTCTTAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAAT
TCCAGAACACAATATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAGTCTGAGGCTAGGGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGT
CTGTGCTACCTCTCTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGAACACTTACCAGAAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAA
ATGGGTATCTTTTATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACTTCACAGAAAGTTAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGA
ATGGCAGGTCATATGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGTTCTAATATCATTAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGG
AGCTATATTTCCACTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTTCCTAACTAATAGATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTT
CCCTCTCTCTTGAGCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_039083634 ⟹ XP_038939562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,520 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,470 (-)	NCBI

RefSeq Acc Id:

XM_039083635 ⟹ XP_038939563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,621 (-)	NCBI

RefSeq Acc Id:

XM_039083636 ⟹ XP_038939564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI

RefSeq Acc Id:

XM_039083637 ⟹ XP_038939565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI

RefSeq Acc Id:

XM_039083638 ⟹ XP_038939566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,943,779 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,449,727 (-)	NCBI

RefSeq Acc Id:

XM_063267202 ⟹ XP_063123272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,519 (-)	NCBI

RefSeq Acc Id:

XM_063267203 ⟹ XP_063123273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,519 (-)	NCBI

RefSeq Acc Id:

XM_063267204 ⟹ XP_063123274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267205 ⟹ XP_063123275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,519 (-)	NCBI

RefSeq Acc Id:

XM_063267206 ⟹ XP_063123276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,737 (-)	NCBI

RefSeq Acc Id:

XM_063267207 ⟹ XP_063123277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267208 ⟹ XP_063123278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267209 ⟹ XP_063123279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267210 ⟹ XP_063123280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267211 ⟹ XP_063123281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267212 ⟹ XP_063123282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI


Protein RefSeqs	NP_955432	(Get FASTA)	NCBI Sequence Viewer
	XP_006245056	(Get FASTA)	NCBI Sequence Viewer
	XP_006245057	(Get FASTA)	NCBI Sequence Viewer
	XP_006245061	(Get FASTA)	NCBI Sequence Viewer
	XP_008765333	(Get FASTA)	NCBI Sequence Viewer
	XP_017451950	(Get FASTA)	NCBI Sequence Viewer
	XP_017451953	(Get FASTA)	NCBI Sequence Viewer
	XP_038939562	(Get FASTA)	NCBI Sequence Viewer
	XP_038939563	(Get FASTA)	NCBI Sequence Viewer
	XP_038939564	(Get FASTA)	NCBI Sequence Viewer
	XP_038939565	(Get FASTA)	NCBI Sequence Viewer
	XP_038939566	(Get FASTA)	NCBI Sequence Viewer
	XP_063123272	(Get FASTA)	NCBI Sequence Viewer
	XP_063123273	(Get FASTA)	NCBI Sequence Viewer
	XP_063123274	(Get FASTA)	NCBI Sequence Viewer
	XP_063123275	(Get FASTA)	NCBI Sequence Viewer
	XP_063123276	(Get FASTA)	NCBI Sequence Viewer
	XP_063123277	(Get FASTA)	NCBI Sequence Viewer
	XP_063123278	(Get FASTA)	NCBI Sequence Viewer
	XP_063123279	(Get FASTA)	NCBI Sequence Viewer
	XP_063123280	(Get FASTA)	NCBI Sequence Viewer
	XP_063123281	(Get FASTA)	NCBI Sequence Viewer
	XP_063123282	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAR36901	(Get FASTA)	NCBI Sequence Viewer
	EDL98942	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045103
	ENSRNOP00000076459
	ENSRNOP00000094417
	ENSRNOP00000104337
GenBank Protein	Q6RUG5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_955432 ⟸ NM_199400

- UniProtKB:

Q6RUG5 (UniProtKB/Swiss-Prot), A0A0H2UHX6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHVVASDAELDAKLEVFHSIQETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMMGAAGKALCSSAKQRLALCTPLS
RLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDASQELDPDTFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGFWEKTAQMMSQIQEACAGFHPYD
FMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEERFEREPAVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLGPGPLTSSSQFLPSRLFDLGLHA
DGAFNSWASQEGSEHSDTLPVPSQHPKKLKYLGPLSNPDAIGHSDDELLNA

hide sequence

RefSeq Acc Id:	XP_006245061 ⟸ XM_006244999
- Peptide Label:	isoform X13
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEVFHSIQETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMMGAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDAS QELDPDTFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGFWEKTAQMMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEE RFEREPAVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLGPGPLTSSSQFLPSRLFDLGLHADGAFNTPNSGNQDMSAWFNLFADLGPLSNPDAIGHSDDELLN A hide sequence

RefSeq Acc Id:	XP_006245057 ⟸ XM_006244995
- Peptide Label:	isoform X4
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL), A0A8I6AM57 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEVFHSIQETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMMGAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDAS QELDPDTFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGFWEKTAQMMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEE RFEREPAVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLGPGPLTSSSQFLPSRLFDLGLHADGAFNSWASQEGSEHSDTLPVPSQHPKKLKSPNSGNQDMSAW FNLFADLGPLSNPDAIGHSDDELLNA hide sequence

RefSeq Acc Id:	XP_006245056 ⟸ XM_006244994
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEVFHSIQETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMMGAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDAS QELDPDTFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGFWEKTAQMMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEE RFEREPAVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLGPGPLTSSSQFLPSRLFDLGLHADGAFNSWASQEGSEHSDTLPVPSQHPKKLKWPPHAGYPASYT LSLDAPNSGNQDMSAWFNLFADLGPLSNPDAIGHSDDELLNA hide sequence

RefSeq Acc Id:	XP_008765333 ⟸ XM_008767111
- Peptide Label:	isoform X3
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMMGAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDASQELDPD TFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGFWEKTAQMMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEERFEREP AVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLGPGPLTSSSQFLPSRLFDLGLHADGAFNSWASQEGSEHSDTLPVPSQHPKKLKWPPHAGYPASYTLSLDAP NSGNQDMSAWFNLFADLGPLSNPDAIGHSDDELLNA hide sequence

Protein Domains

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6RUG5-F1-model_v2	AlphaFold	Q6RUG5	1-435	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-27386	BioCyc
Ensembl Genes	ENSRNOG00000017258	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000041546	ENTREZGENE
	ENSRNOT00000094628	ENTREZGENE
	ENSRNOT00000119954	ENTREZGENE
	ENSRNOT00000135120	ENTREZGENE
Gene3D-CATH	1.20.1270.60	UniProtKB/Swiss-Prot
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot
	AH_dom	UniProtKB/Swiss-Prot
	Islet_autoAg_Ica1/Ica1-like	UniProtKB/Swiss-Prot
	Islet_autoAg_Ica1_C	UniProtKB/Swiss-Prot
KEGG Report	rno:316432	UniProtKB/Swiss-Prot
NCBI Gene	316432	ENTREZGENE
PANTHER	ISLET CELL AUTOANTIGEN 1-LIKE PROTEIN	UniProtKB/Swiss-Prot
	PTHR10164	UniProtKB/Swiss-Prot
Pfam	Arfaptin	UniProtKB/Swiss-Prot
	ICA69	UniProtKB/Swiss-Prot
PhenoGen	Ica1l	PhenoGen
PROSITE	PS50870	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000017258	RatGTEx
SMART	Arfaptin	UniProtKB/Swiss-Prot
	ICA69	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHX6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5XZZ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AM57	ENTREZGENE, UniProtKB/TrEMBL
	A6IPB8	ENTREZGENE, UniProtKB/TrEMBL
	ICA1L_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Ica1l	islet cell autoantigen 1-like	LOC316432	Ica69-related protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-30	LOC316432				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD