Rpl3 (ribosomal protein L3) - Rat Genome Database

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Gene: Rpl3 (ribosomal protein L3) Rattus norvegicus
Analyze
Symbol: Rpl3
Name: ribosomal protein L3
RGD ID: 735105
Description: Enables 5S rRNA binding activity. Predicted to be involved in translation. Predicted to act upstream of or within cellular response to interleukin-4. Located in ribosome. Part of cytosolic large ribosomal subunit. Is active in synapse. Orthologous to human RPL3 (ribosomal protein L3); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L3; L4; large ribosomal subunit protein uL3; MGC72934
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,491,943 - 113,508,115 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7113,501,960 - 113,507,990 (-)EnsemblGRCr8
mRatBN7.27111,622,255 - 111,627,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,621,610 - 111,636,468 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7113,370,376 - 113,375,752 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,593,924 - 115,599,300 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,563,278 - 115,568,654 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,297,365 - 121,302,739 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,297,355 - 121,311,565 (-)Ensemblrn6Rnor6.0
Rnor_5.07121,287,079 - 121,292,461 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47118,314,537 - 118,319,911 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7107,950,549 - 107,955,923 (-)NCBICelera
RGSC_v3.17118,348,766 - 118,354,141 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (EXP)
C60 fullerene  (EXP)
caffeine  (ISO)
carbamazepine  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flutamide  (EXP)
furfural  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (EXP)
ivermectin  (ISO)
L-ethionine  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
melatonin  (ISO)
methotrexate  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nitric oxide  (ISO)
ochratoxin A  (ISO)
omeprazole  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenethyl isothiocyanate  (EXP)
PhIP  (EXP)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
pyrimidifen  (ISO)
quercetin  (EXP)
resveratrol  (ISO)
rotenone  (EXP,ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
trichloroethene  (EXP)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
4. Studies on interaction of 5 S RNA with ribosomal proteins. Kargel HJ, etal., FEBS Lett. 1987 Aug 10;220(1):126-8.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Information Derived from GenBank Report RGD, Sept. 2003
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Identification of neighboring protein pairs in rat liver 60S ribosomal subunits cross-linked with dimethyl suberimidate or dimethyl 3,3'-dithiobispropionimidate. Uchiumi T, etal., J Biochem. 1980 Oct;88(4):1033-44.
11. Molecular constituents of the postsynaptic density fraction revealed by proteomic analysis using multidimensional liquid chromatography-tandem mass spectrometry. Yoshimura Y, etal., J Neurochem. 2004 Feb;88(3):759-68.
Additional References at PubMed
PMID:1520347   PMID:6355773   PMID:9798653   PMID:12962325   PMID:15489334   PMID:16791210   PMID:16963496   PMID:20458337   PMID:21423176   PMID:21630459   PMID:21700703   PMID:22082260  
PMID:22658674   PMID:22681889   PMID:22871113   PMID:23349634   PMID:24625528   PMID:30053369  


Genomics

Comparative Map Data
Rpl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,491,943 - 113,508,115 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7113,501,960 - 113,507,990 (-)EnsemblGRCr8
mRatBN7.27111,622,255 - 111,627,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,621,610 - 111,636,468 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7113,370,376 - 113,375,752 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,593,924 - 115,599,300 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,563,278 - 115,568,654 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,297,365 - 121,302,739 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,297,355 - 121,311,565 (-)Ensemblrn6Rnor6.0
Rnor_5.07121,287,079 - 121,292,461 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47118,314,537 - 118,319,911 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7107,950,549 - 107,955,923 (-)NCBICelera
RGSC_v3.17118,348,766 - 118,354,141 (-)NCBI
Cytogenetic Map7q34NCBI
RPL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,312,882 - 39,319,623 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,312,870 - 39,320,389 (-)Ensemblhg38GRCh38
GRCh372239,708,887 - 39,715,628 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,038,833 - 38,045,616 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342238,033,389 - 38,040,128NCBI
Celera2223,511,001 - 23,517,786 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,674,611 - 22,681,396 (-)NCBIHuRef
CHM1_12239,667,623 - 39,674,408 (-)NCBICHM1_1
T2T-CHM13v2.02239,783,532 - 39,790,275 (-)NCBIT2T-CHM13v2.0
Rpl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,961,993 - 79,967,553 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,961,992 - 79,976,069 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381580,077,781 - 80,083,406 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,077,791 - 80,091,868 (-)Ensemblmm10GRCm38
MGSCv371579,908,211 - 79,913,836 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361579,905,050 - 79,910,590 (-)NCBIMGSCv36mm8
Celera1582,193,343 - 82,198,955 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Rpl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,217,777 - 25,224,052 (-)Ensembl
ChiLan1.0NW_00495541325,217,777 - 25,224,052 (-)NCBIChiLan1.0ChiLan1.0
RPL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22349,157,320 - 49,164,856 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,848,731 - 51,855,625 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,216,370 - 20,223,259 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12238,033,480 - 38,040,992 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,030,039 - 38,040,992 (-)EnsemblpanPan2panpan1.1
RPL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,739,089 - 25,745,487 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,739,089 - 25,762,501 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1025,675,001 - 25,681,399 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01026,491,206 - 26,497,609 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,491,206 - 26,497,608 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,204,996 - 26,211,394 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,524,659 - 26,531,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,700,748 - 26,707,146 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,288,589 - 9,294,725 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,299,992 - 2,305,089 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,299,067 - 2,305,139 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,922,665 - 8,929,767 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.158,922,697 - 8,929,768 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,216,929 - 6,223,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666045103,820,580 - 103,827,209 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,017,452 - 9,025,832 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247529,019,200 - 9,025,626 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl3
103 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:65
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000067032
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
BI283926  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27111,622,786 - 111,623,863 (+)MAPPERmRatBN7.2
Rnor_6.07121,297,887 - 121,298,963NCBIRnor6.0
Rnor_5.07121,287,609 - 121,288,685UniSTSRnor5.0
RGSC_v3.47118,315,059 - 118,316,135UniSTSRGSC3.4
Celera7107,951,071 - 107,952,147UniSTS
Cytogenetic Map7q34UniSTS
UniSTS:498308  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87113,504,961 - 113,505,400 (+)Marker Load Pipeline
mRatBN7.27111,624,611 - 111,625,050 (+)MAPPERmRatBN7.2
Rnor_6.07121,299,712 - 121,300,150NCBIRnor6.0
Rnor_5.07121,289,434 - 121,289,872UniSTSRnor5.0
RGSC_v3.47118,316,884 - 118,317,322UniSTSRGSC3.4
Celera7107,952,896 - 107,953,334UniSTS
Cytogenetic Map7q34UniSTS
D14S1219  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87113,504,962 - 113,505,351 (+)Marker Load Pipeline
mRatBN7.27111,624,612 - 111,625,001 (+)MAPPERmRatBN7.2
Rnor_6.07121,299,713 - 121,300,101NCBIRnor6.0
Rnor_5.07121,289,435 - 121,289,823UniSTSRnor5.0
RGSC_v3.47118,316,885 - 118,317,273UniSTSRGSC3.4
Celera7107,952,897 - 107,953,285UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_198753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067032   ⟹   ENSRNOP00000060662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7113,502,605 - 113,507,990 (-)Ensembl
mRatBN7.2 Ensembl7111,622,255 - 111,627,734 (-)Ensembl
Rnor_6.0 Ensembl7121,297,355 - 121,302,740 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089407   ⟹   ENSRNOP00000069877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7113,501,960 - 113,507,275 (-)Ensembl
mRatBN7.2 Ensembl7111,621,610 - 111,626,925 (-)Ensembl
Rnor_6.0 Ensembl7121,297,414 - 121,302,025 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092252   ⟹   ENSRNOP00000075786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7113,502,605 - 113,507,990 (-)Ensembl
mRatBN7.2 Ensembl7111,626,661 - 111,636,468 (-)Ensembl
Rnor_6.0 Ensembl7121,301,086 - 121,311,565 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,302,507 - 121,303,178 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,301,253 - 121,301,964 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092507   ⟹   ENSRNOP00000075863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,299,706 - 121,302,730 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,300,217 - 121,302,729 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,297,355 - 121,297,794 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146099   ⟹   ENSRNOP00000102061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7113,502,605 - 113,507,990 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154503   ⟹   ENSRNOP00000102360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7113,502,605 - 113,507,265 (-)Ensembl
RefSeq Acc Id: NM_198753   ⟹   NP_942048
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,502,605 - 113,507,990 (-)NCBI
mRatBN7.27111,622,255 - 111,627,640 (-)NCBI
Rnor_6.07121,297,365 - 121,302,739 (-)NCBI
Rnor_5.07121,287,079 - 121,292,461 (-)NCBI
RGSC_v3.47118,314,537 - 118,319,911 (-)RGD
Celera7107,950,549 - 107,955,923 (-)RGD
Sequence:
RefSeq Acc Id: XM_063263320   ⟹   XP_063119390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,491,943 - 113,508,115 (-)NCBI
RefSeq Acc Id: XR_010052961
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,491,943 - 113,508,115 (-)NCBI
RefSeq Acc Id: XR_010052962
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,491,943 - 113,508,115 (-)NCBI
Protein Sequences
Protein RefSeqs NP_942048 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119390 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58494 (Get FASTA)   NCBI Sequence Viewer  
  EDM15768 (Get FASTA)   NCBI Sequence Viewer  
  EDM15769 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060662
GenBank Protein P21531 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_942048   ⟸   NM_198753
- UniProtKB: P21531 (UniProtKB/Swiss-Prot),   A6HSV4 (UniProtKB/TrEMBL),   A0A8L2QVY8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075786   ⟸   ENSRNOT00000092252
Ensembl Acc Id: ENSRNOP00000060662   ⟸   ENSRNOT00000067032
Ensembl Acc Id: ENSRNOP00000075863   ⟸   ENSRNOT00000092507
Ensembl Acc Id: ENSRNOP00000069877   ⟸   ENSRNOT00000089407
RefSeq Acc Id: XP_063119390   ⟸   XM_063263320
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R1Y6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102061   ⟸   ENSRNOT00000146099
Ensembl Acc Id: ENSRNOP00000102360   ⟸   ENSRNOT00000154503

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P21531-F1-model_v2 AlphaFold P21531 1-403 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695493
Promoter ID:EPDNEW_R6017
Type:single initiation site
Name:Rpl3_1
Description:ribosomal protein L3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07121,302,739 - 121,302,799EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735105 AgrOrtholog
BioCyc Gene G2FUF-32723 BioCyc
Ensembl Genes ENSRNOG00000016896 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000067032 ENTREZGENE
Gene3D-CATH 3.30.1430.10 UniProtKB/Swiss-Prot
  4.10.960.10 UniProtKB/Swiss-Prot
  Translation factors UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887923 IMAGE-MGC_LOAD
InterPro L3_arc_euk UniProtKB/Swiss-Prot
  Ribosomal_L3 UniProtKB/Swiss-Prot
  Ribosomal_L3_CS UniProtKB/Swiss-Prot
  Ribosomal_L3_dom_3_arc_sf UniProtKB/Swiss-Prot
  Transl_B-barrel_sf UniProtKB/Swiss-Prot
KEGG Report rno:300079 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72934 IMAGE-MGC_LOAD
NCBI Gene 300079 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L3 UniProtKB/Swiss-Prot
  PTHR11363 UniProtKB/Swiss-Prot
Pfam Ribosomal_L3 UniProtKB/Swiss-Prot
PhenoGen Rpl3 PhenoGen
PROSITE RIBOSOMAL_L3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016896 RatGTEx
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot
UniProt A0A0U1RRR9_RAT UniProtKB/TrEMBL
  A0A8L2QVY8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R1Y6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LBX9_RAT UniProtKB/TrEMBL
  A6HSV3_RAT UniProtKB/TrEMBL
  A6HSV4 ENTREZGENE, UniProtKB/TrEMBL
  P21531 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rpl3  ribosomal protein L3      Symbol and Name status set to approved 1299863 APPROVED