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Gene: Kcnt2 (potassium sodium-activated channel subfamily T member 2) Rattus norvegicus

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Symbol:

Kcnt2

Name:

potassium sodium-activated channel subfamily T member 2

RGD ID:

735074

Description:

Enables chloride-activated potassium channel activity. Involved in potassium ion export across plasma membrane. Acts upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 57. Orthologous to human KCNT2 (potassium sodium-activated channel subfamily T member 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

potassium channel subfamily T member 2; potassium channel, sodium-activated subfamily T, member 2; potassium channel, subfamily T, member 2; sequence like an intermediate conductance potassium channel subunit; Slick; sodium and chloride-activated ATP-sensitive potassium channel Slo2.1; sodium- and chloride-activated ATP-sensitive potassium channel

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	54,214,831 - 54,609,889 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	54,215,307 - 54,607,924 (+)	Ensembl				GRCr8
mRatBN7.2	13	51,664,129 - 52,059,209 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	51,664,686 - 52,056,987 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	54,250,284 - 54,650,283 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	55,538,210 - 55,938,219 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	52,807,916 - 53,208,525 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	57,130,855 - 57,520,263 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	57,131,395 - 57,521,836 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	62,143,990 - 62,534,723 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	53,407,504 - 53,803,012 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	51,920,143 - 52,310,493 (+)	NCBI		Celera
RGSC_v3.1	13	53,421,583 - 53,817,092 (+)	NCBI
Cytogenetic Map	13	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Congenital Hyperinsulinism (ISO)

developmental and epileptic encephalopathy 57 (ISO)

epilepsy (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-Hydroxybenzophenone (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

bazedoxifene (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dioxygen (ISO)

diquat (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

gentamycin (EXP)

glyphosate (ISO)

isoprenaline (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP,ISO)

nitrofen (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl caffeate (EXP)

phenobarbital (ISO)

progesterone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

potassium ion export across plasma membrane (IEA,IMP,ISO)

potassium ion transmembrane transport (IBA,IEA)

potassium ion transport (IDA,IEA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IC,IEA,ISO,ISS)

Molecular Function

ATP binding (TAS)

chloride-activated potassium channel activity (IEA,IMP,ISO)

intracellular sodium-activated potassium channel activity (IBA,IEA,ISO,TAS)

outward rectifier potassium channel activity (IBA)

potassium channel activity (IDA,IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Slick (Slo2.1), a rapidly-gating sodium-activated potassium channel inhibited by ATP.	Bhattacharjee A, etal., J Neurosci 2003 Dec 17;23(37):11681-91.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	A De Novo Mutation in the Sodium-Activated Potassium Channel KCNT2 Alters Ion Selectivity and Causes Epileptic Encephalopathy.	Gururaj S, etal., Cell Rep. 2017 Oct 24;21(4):926-933. doi: 10.1016/j.celrep.2017.09.088.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15375169	PMID:15717307	PMID:18664322	PMID:19403831	PMID:25347289	PMID:26100633	PMID:26823461

Genomics

Comparative Map Data

Kcnt2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	54,214,831 - 54,609,889 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	54,215,307 - 54,607,924 (+)	Ensembl				GRCr8
mRatBN7.2	13	51,664,129 - 52,059,209 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	51,664,686 - 52,056,987 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	54,250,284 - 54,650,283 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	55,538,210 - 55,938,219 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	52,807,916 - 53,208,525 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	57,130,855 - 57,520,263 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	57,131,395 - 57,521,836 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	62,143,990 - 62,534,723 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	53,407,504 - 53,803,012 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	51,920,143 - 52,310,493 (+)	NCBI		Celera
RGSC_v3.1	13	53,421,583 - 53,817,092 (+)	NCBI
Cytogenetic Map	13	q21	NCBI

KCNT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	196,225,779 - 196,608,440 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	196,225,779 - 196,609,225 (-)	Ensembl			hg38	GRCh38
GRCh37	1	196,194,909 - 196,577,570 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	194,461,536 - 194,844,122 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	169,303,964 - 169,686,483 (-)	NCBI		Celera
Cytogenetic Map	1	q31.3	NCBI
HuRef	1	167,436,578 - 167,819,452 (-)	NCBI		HuRef
CHM1_1	1	197,616,644 - 197,999,107 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	195,571,842 - 195,954,779 (-)	NCBI		T2T-CHM13v2.0

Kcnt2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	140,173,373 - 140,541,783 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	140,173,896 - 140,539,805 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	140,245,657 - 140,614,045 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	140,246,158 - 140,612,067 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	142,142,834 - 142,506,838 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	142,062,668 - 142,426,672 (+)	NCBI		MGSCv36	mm8
Celera	1	142,875,113 - 143,237,483 (+)	NCBI		Celera
Cytogenetic Map	1	F	NCBI
cM Map	1	61.62	NCBI

Kcnt2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	33,076,426 - 33,441,793 (-)	Ensembl
ChiLan1.0	NW_004955406	33,080,570 - 33,441,342 (-)	NCBI	ChiLan1.0	ChiLan1.0

KCNT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	53,195,409 - 53,586,328 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	52,800,951 - 53,192,049 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	171,722,130 - 172,112,927 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	176,001,997 - 176,391,180 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	176,003,920 - 176,390,592 (-)	Ensembl			panPan2	panpan1.1

KCNT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	3,006,639 - 3,382,234 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	3,006,140 - 3,380,218 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	3,097,770 - 3,473,355 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	3,003,542 - 3,376,325 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	3,003,375 - 3,377,999 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	2,999,648 - 3,374,824 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	3,391,702 - 3,766,835 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	3,591,639 - 3,964,394 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kcnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	77,990,611 - 78,357,811 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936638	3,789,701 - 4,051,971 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936638	3,789,339 - 4,154,356 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KCNT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	10	23,896,301 - 24,106,816 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KCNT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	32,790,439 - 33,193,936 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	32,922,277 - 33,192,820 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	33,705,790 - 34,115,831 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kcnt2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624798	3,578,706 - 3,867,854 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624798	3,579,528 - 3,868,717 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kcnt2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	20,506,211 - 20,773,224 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Kcnt2
3502 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	22
Count of miRNA genes:	21
Interacting mature miRNAs:	22
Transcripts:	ENSRNOT00000017884
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

UniSTS:225072

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	51,851,064 - 51,851,245 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	57,316,406 - 57,316,586	NCBI	Rnor6.0
Rnor_5.0	13	62,329,932 - 62,330,112	UniSTS	Rnor5.0
RGSC_v3.4	13	53,594,840 - 53,595,020	UniSTS	RGSC3.4
Celera	13	52,105,283 - 52,105,463	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	12	66	163	77	76	45	36	45	6	275	135	11	138	73	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_198762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY359443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017884 ⟹ ENSRNOP00000017884

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	54,215,307 - 54,607,924 (+)	Ensembl
mRatBN7.2 Ensembl	13	51,664,686 - 52,056,987 (+)	Ensembl
Rnor_6.0 Ensembl	13	57,131,395 - 57,519,674 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083693 ⟹ ENSRNOP00000071443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	54,215,307 - 54,607,924 (+)	Ensembl
mRatBN7.2 Ensembl	13	51,664,686 - 52,056,987 (+)	Ensembl
Rnor_6.0 Ensembl	13	57,243,877 - 57,521,836 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113684 ⟹ ENSRNOP00000093596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	54,215,307 - 54,607,924 (+)	Ensembl
mRatBN7.2 Ensembl	13	51,664,686 - 52,056,987 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137196 ⟹ ENSRNOP00000104709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	54,312,845 - 54,607,924 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173161 ⟹ ENSRNOP00000101177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	54,215,307 - 54,607,924 (+)	Ensembl

RefSeq Acc Id:

NM_198762 ⟹ NP_942057

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,215,307 - 54,607,924 (+)	NCBI
mRatBN7.2	13	51,664,612 - 52,057,244 (+)	NCBI
Rnor_6.0	13	57,131,395 - 57,519,674 (+)	NCBI
Rnor_5.0	13	62,143,990 - 62,534,723 (+)	NCBI
RGSC_v3.4	13	53,407,504 - 53,803,012 (+)	RGD
Celera	13	51,920,143 - 52,310,493 (+)	RGD

Sequence:

show sequence

CCATCCCCTTGTTGGATGTTGCCCATTCCTTAAGAAAGGATGGTTGATTTGGAGAGCGAAGTAC
CCCCTCTGCCTCCCAGGTACAGATTCCGTGATTTGCTGCTAGGGGACCAAGGCTGGCAGAATGA
TGACAGGGTTCAAGTCGAATTCTACATGAATGAAAACACATTTAAAGAGAGATTAAAGTTGTTT
TTCATAAAAAACCAGCGATCAAGTCTAAGAATCCGCTTGTTCAACTTTTCCCTCAAATTGTTAA
GCTGTTTGTTATACATTATCCGTGTGTTGCTTGAGAAACCTTCACAGGGAAATGATTGGTCTCA
CATATTTTGGGTTAACAGAAGCCTGCCTTTATGGGGTTTACAGGTCTCGGTGGCATTGATAAGT
CTATTTGAAACAATACTCCTTGGATATCTCAGTTATAAGGGGAATATCTGGGAGCAGATTTTAC
GAGTTCCATTCATCTTGGAAATAATCAATGCAGTTCCCTTCATCATCTCAATATTCTGGCCTAC
GTTAAGAAATCTCTTTGTTCCAGTTTTTCTAAATTGTTGGCTTGCCAAACATGCCTTGGAAAAT
ATGATTAATGATCTTCATCGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTCTGA
TTTTGATATCTACTTTACTATGCCTTATCTTCACTTGCATTTGTGGAATTCAGCATCTGGAACG
AATTGGAAAGAAACTCAATCTCTTTGACTCCCTGTATTTCTGCATTGTGACATTTTCTACTGTG
GGCTTTGGGGATGTTACTCCTGAAACATGGTCCTCCAAGCTTTTTGTTGTTGCTATGATCTGCG
TTGCTCTTGTAGTTCTCCCCATACAGTTTGAACAGCTGGCCTATTTGTGGATGGAGAGACAAAA
GTCGGGAGGAAACTATAGTCGACACAGAGCTCAGACTGAGAAGCATGTTGTTCTGTGTGTCAGC
TCATTGAAGATTGACTTGCTTATGGATTTTTTGAATGAATTCTATGCACATCCAAGACTGCAGG
ATTATTATGTGGTGATTTTGTGTCCCACGGAGATGGATGTGCAAGTTCGGAGAGTGCTACAGAT
TCCAATGTGGTCCCAGAGAGTGATCTACCTTCAAGGCTCTGCCCTTAAAGACCAGGATCTCCTG
AGAGCAAAGATGGACAATGCTGAGGCCTGTTTCATTTTGAGTAGCCGCTGTGAAGTCGATAGAA
CATCATCTGATCACCAGACAATTTTGAGAGCATGGGCTGTAAAAGATTTTGCCCCAAATTGTCC
TCTGTATGTTCAGATATTAAAACCAGAAAATAAATTCCACATCAAATTTGCAGATCATGTTGTT
TGTGAAGAAGAGTTTAAGTACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACAC
TTATTACACTACTGGTTCATACCTCTAGAGGGCAGTGTGTGTGCTTGTGTTGCAGAGAAGGGCA
GCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAAATGAAGTCTACCACATC
GTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTCC
ATGCACACAAAAAGTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTT
GCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACC
AAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCAT
TTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGCATGGGTACTGTGGCTAT
AGACTTACAAGACACAAGCTGTAGAGCAGCAAGTGGCCCTACACTGGCTCTTCCTTCAGAGGGA
GGCAAGGAACTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTAGCAGATACATCATCAATTC
AAACCTGCGATCTTCTAAGTGACCAGTCAGAAGATGAAACTACACCAGATGAAGAAACATCTTC
AAATTTAGAGTATGCCAAAGGCTACCCACCTTATTCTCCATACATAGGAAGTTCACCTACTTTT
TGTCATCTACTTCAAGAAAAAGTGCCCTTTTGCTGCCTAAGATTAGACAAGAGTTGCCAGCATA
ACTACTATGAGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCTGAAAC
GGCTGGGAACGGATTATATAATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAGAAAGAA
TTAAATCCCATAGTTCTTCTATTGGATAATCCGCCAGATATGCATTTTCTGGATGCAATCTGTT
GGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAACCTAGATGATTTGCTCAGGTGTGG
AGTGACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGAC
TACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAGGTTGTTTTCGAGTCTCA
GTATTATCACTGAGCTTACTCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGACTG
TTACTCTCTTGCACTTTCAAAACTGGAAAAGAAAGAGCGAGAACGAGGTTCTAACCTGGCCTTC
ATGTTCCGACTGCCTTTCGCTGCGGGGAGAGTGTTCAGCATCAGTATGCTGGACACGCTGCTTT
ATCAGTCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCAT
ACCAGGATCGGGGTTTCTTTGTTCTATGAAAATTACTGAAGATGACTTGTGGATCAGAACGTAT
GCCAGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCATTGGGATCTACAGAACAG
AATCTCAGAAGCTAACTACATCTGAGTCTCAAATATCCATCAGTGTGGAAGAGTGGGAAGACAC
CAAAGATGTCAAAGACCCAGGGCACCACCGCAGCATTCACCGCAACTCAACCTCTAGCGACCAG
TCAGACCACCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGGAGGCTGAGCAGAAAAGGGC
CAAAGCACTCTGGTAAAACTGCAGAAAAGATAACCCAGCAACGACTGAATCTCTACAGGAGGTC
GGAAAGACAGGAGCTTGCTGAACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCTACGGTG
GGCTACGATGAAATGAATGATCATCAGAGCACCCTTTCCTACATCCTGATTAATCCATCTCCAG
ACACCAGGCTTGAGCTGAATGATGTTGTATATTTGATCCGACCAGATCCACTGTCCTACCTTCC
GAACAGTGAACCCAGTAGGAAAAACAGCATCTGCAATGCCGCTGTTCAAGATTCTCGGGAGGAA
ACACAACTCTGATGAAAAGAAAATAAGAGACATTATATTCCTTGCAGGGATCTTGCTTAAAATC
ATTAAAATGTTGCAGA

hide sequence

RefSeq Acc Id:

XM_006249943 ⟹ XP_006250005

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,838 - 54,609,889 (+)	NCBI
mRatBN7.2	13	51,664,132 - 52,059,209 (+)	NCBI
Rnor_6.0	13	57,130,856 - 57,520,263 (+)	NCBI
Rnor_5.0	13	62,143,990 - 62,534,723 (+)	NCBI

Sequence:

show sequence

TAGGAAAGACCTGTACCGGGAGAGCCTGAGCCCACCGCCTTCGCCCGGCTGCGCCCAGTGCTTG
CTCTTCTGGCGAAAGAGCTGCGGTCGGGGATGCCCTAGTGGGAGGCTCTGGTCCTTGCCTTTCA
GGAAAGTGCCTAGCCATCACGCGGTGCTCACACCCACCACCTGCCCTCTTTCTAGGCACCGCGC
GAATTTTCTTTTCCTTTTCTTTCTTTTTTTTTTTTCTGTTCTTTTTTTGTCGGTGAAGTAACTT
TTGCATCCCCGCCTCCCCCCGGTTCTAGGAACCAGAGGCGGCGCCGAGCTTGGGGGCGGTTCCT
TGGCAGCGCTGGTTCAAGTCGCAGCCAGACTTTTGCTCCTGGGCTCGGTTTGCATCATCCCCAT
CACACCCTCGGGGAAGAGGAGCCACCCCTTTCCAGTCTCAGCTTCCGGCCGAACGACCCCTCCC
CCTCCGGGTCCCCCCATCCCCCGGCCCTTCTCCCACCCTCCCCAGCACGGCAACCCCCTCCGCA
GGGCTTGCTGGCCCTTTCTGCCCTCCTCCATCCCTTGTTGGATGTTGCCCATTCCTTAAGAAAG
GATGGTTGATTTGGAGAGCGAAGTACCCCCTCTGCCTCCCAGGTACAGATTCCGTGATTTGCTG
CTAGGGGACCAAGGCTGGCAGAATGATGACAGGGTTCAAGTCGAATTCTACATGAATGAAAACA
CATTTAAAGAGAGATTAAAGTTGTTTTTCATAAAAAACCAGCGATCAAGTCTAAGAATCCGCTT
GTTCAACTTTTCCCTCAAATTGTTAAGCTGTTTGTTATACATTATCCGTGTGTTGCTTGAGAAA
CCTTCACAGGGAAATGATTGGTCTCACATATTTTGGGTTAACAGAAGCCTGCCTTTATGGGGTT
TACAGGTCTCGGTGGCATTGATAAGTCTATTTGAAACAATACTCCTTGGATATCTCAGTTATAA
GGGGAATATCTGGGAGCAGATTTTACGAGTTCCATTCATCTTGGAAATAATCAATGCAGTTCCC
TTCATCATCTCAATATTCTGGCCTACGTTAAGAAATCTCTTTGTTCCAGTTTTTCTAAATTGTT
GGCTTGCCAAACATGCCTTGGAAAATATGATTAATGATCTTCATCGAGCCATTCAGCGTACACA
GTCTGCAATGTTTAATCAAGTTCTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTGC
ATTTGTGGAATTCAGCATCTGGAACGAATTGGAAAGAAACTCAATCTCTTTGACTCCCTTTATT
TCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTTACTCCTGAAACATGGTCCTCCAA
GCTTTTTGTTGTTGCTATGATCTGCGTTGCTCTTGTAGTTCTCCCCATACAGTTTGAACAGCTG
GCCTATTTGTGGATGGAGAGACAAAAGTCGGGAGGAAACTATAGTCGACACAGAGCTCAGACTG
AGAAGCATGTTGTTCTGTGTGTCAGCTCATTGAAGATTGACTTGCTTATGGATTTTTTGAATGA
ATTCTATGCACATCCAAGACTGCAGGATTATTATGTGGTGATTTTGTGTCCCACGGAGATGGAT
GTGCAAGTTCGGAGAGTGCTACAGATTCCAATGTGGTCCCAGAGAGTGATCTACCTTCAAGGCT
CTGCCCTTAAAGACCAGGATCTCCTGAGAGCAAAGATGGACAATGCTGAGGCCTGTTTCATTTT
GAGTAGCCGCTGTGAAGTCGATAGAACATCATCTGATCACCAGACAATTTTGAGAGCATGGGCT
GTAAAAGATTTTGCCCCAAATTGTCCTCTGTATGTTCAGATATTAAAACCAGAAAATAAATTCC
ACATCAAATTTGCAGATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCATGTTAGCTTTAAA
CTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCAAGAA
GGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAAATGAAGTCTACC
ACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTC
TTTCCATGCACACAAAAAGTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAAC
ATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATA
TTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAG
GTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGCATGGGTACTGTG
GCTATAGACTTACAAGACACAAGCTGTAGAGCAGCAAGTGGCCCTACACTGGCTCTTCCTTCAG
AGGGAGGCAAGGAACTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTAGCAGATACATCATC
AATTCAAACCTGCGATCTTCTAAGTGACCAGTCAGAAGATGAAACTACACCAGATGAAGAAACA
TCTTCAAATTTAGAGTATGCCAAAGGCTACCCACCTTATTCTCCATACATAGGAAGTTCACCTA
CTTTTTGTCATCTACTTCAAGAAAAAGTGCCCTTTTGCTGCTTAAGATTAGACAAGAGTTGCCA
GCATAACTACTATGAGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCT
GAAACGGCTGGGAACGGATTATATAATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAGA
AAGAATTAAATCCCATAGTTCTTCTATTGGATAATCCCCTAGATGATTTGCTCAGGTGTGGAGT
GACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTAC
ATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAGGTTGTTTTCGAGTCTCAGTA
TTATCACTGAGCTTACTCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGACTGTTA
CTCTCTTGCACTTTCAAAACTGGAAAAGAAAGAGCGAGAACGAGGTTCTAACCTGGCCTTCATG
TTCCGACTGCCTTTCGCTGCGGGGAGAGTGTTCAGCATCAGTATGCTGGACACGCTGCTTTATC
AGTCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACC
AGGATCGGGGTTTCTTTGTTCTATGAAAATTACTGAAGATGACTTGTGGATCAGAACGTATGCC
AGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCATTGGGATCTACAGAACAGAAT
CTCAGAAGCTAACTACATCTGAGTCTCAAATATCCATCAGTGTGGAAGAGTGGGAAGACACCAA
AGATGTCAAAGACCCAGGGCACCACCGCAGCATTCACCGCAACTCAACCTCTAGCGACCAGTCA
GACCACCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGGAGGCTGAGCAGAAAAGGGCCAA
AGCACTCTGGTAAAACTGCAGAAAAGATAACCCAGCAACGACTGAATCTCTACAGGAGGTCGGA
AAGACAGGAGCTTGCTGAACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCTACGGTGGGC
TACGATGAAATGAATGATCATCAGAGCACCCTTTCCTACATCCTGATTAATCCATCTCCAGACA
CCAGGCTTGAGCTGAATGATGTTGTATATTTGATCCGACCAGATCCACTGTCCTACCTTCCGAA
CAGTGAACCCAGTAGGAAAAACAGCATCTGCAATGCCGCTGTTCAAGATTCTCGGGAGGAAACA
CAACTCTGATGAAAAGAAAATAAGAGACATTATATTCCTTGCAGGGATCTTGCTTAAAATCATT
AAAATGTTGCAGATTGTCTAAAGAAGCTGACTGGAATGTATTCAATTTCTCATGTTGCTTCTAT
ATAAAACAAAATCTATTCTCTTTGAAGTACAGATCATTTTGAAACATAATGTGATATTTGTTGA
CATTTTCCTGCTTAATATTTCAACTTCATTGGAGGAGATTCTCAAAATAACTATAAAATGCAGA
AATGAAAAATCTGATATTTAGTTGTTTAAGAACTAAGAGTGTATAAAAATTTTAAAATCCACCT
ATATTAAGTACATCATAAGAACACAGAAGATTCATTTTCTTTTTATAGTTAAATATGTCATTAT
ATTGTTGAAAATTGTTGTTTTTAAAATTGAGCCCATTAAGAATTAATGCGTATCTCTATATGGA
GATTAACCACTAACTTACATGGCTGACTTCTGTCTAGGCATCATAGTTTGCTTCAGAGTAGATC
TTTAACGTCATTTCTGTCTTTCCATATTACTGTATTTACTTTAGAATCTGAGCTATCCATAGCA
TGATTAATTTTACAGAAGAAACTAAAACACAAAGGAATATTGAGCACCTGAGCTTTTTTAGTAA
CTTTACATCAAATGCACATTTTATGC

hide sequence

RefSeq Acc Id:

XM_017598802 ⟹ XP_017454291

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,833 - 54,609,889 (+)	NCBI
mRatBN7.2	13	51,664,130 - 52,059,209 (+)	NCBI
Rnor_6.0	13	57,130,855 - 57,520,263 (+)	NCBI

Sequence:

show sequence

CTAGGAAAGACCTGTACCGGGAGAGCCTGAGCCCACCGCCTTCGCCCGGCTGCGCCCAGTGCTT
GCTCTTCTGGCGAAAGAGCTGCGGTCGGGGATGCCCTAGTGGGAGGCTCTGGTCCTTGCCTTTC
AGGAAAGTGCCTAGCCATCACGCGGTGCTCACACCCACCACCTGCCCTCTTTCTAGGCACCGCG
CGAATTTTCTTTTCCTTTTCTTTCTTTTTTTTTTTTCTGTTCTTTTTTTGTCGGTGAAGTAACT
TTTGCATCCCCGCCTCCCCCCGGTTCTAGGAACCAGAGGCGGCGCCGAGCTTGGGGGCGGTTCC
TTGGCAGCGCTGGTTCAAGTCGCAGCCAGACTTTTGCTCCTGGGCTCGGTTTGCATCATCCCCA
TCACACCCTCGGGGAAGAGGAGCCACCCCTTTCCAGTCTCAGCTTCCGGCCGAACGACCCCTCC
CCCTCCGGGTCCCCCCATCCCCCGGCCCTTCTCCCACCCTCCCCAGCACGGCAACCCCCTCCGC
AGGGCTTGCTGGCCCTTTCTGCCCTCCTCCATCCCTTGTTGGATGTTGCCCATTCCTTAAGAAA
GGATGGTTGATTTGGAGAGCGAAGTACCCCCTCTGCCTCCCAGGTACAGATTCCGTGATTTGCT
GCTAGGGGACCAAGGCTGGCAGAATGATGACAGGGTTCAAGTCGAATTCTACATGAATGAAAAC
ACATTTAAAGAGAGATTAAAGTTGTTTTTCATAAAAAACCAGCGATCAAGTCTAAGAATCCGCT
TGTTCAACTTTTCCCTCAAATTGTTAAGCTGTTTGTTATACATTATCCGTGTGTTGCTTGAGAA
ACCTTCACAGGGAAATGATTGGTCTCACATATTTTGGGTTAACAGAAGCCTGCCTTTATGGGGT
TTACAGGTCTCGGTGGCATTGATAAGTCTATTTGAAACAATACTCCTTGGATATCTCAGTTATA
AGGGGAATATCTGGGAGCAGATTTTACGAGTTCCATTCATCTTGGAAATAATCAATGCAGTTCC
CTTCATCATCTCAATATTCTGGCCTACGTTAAGAAATCTCTTTGTTCCAGTTTTTCTAAATTGT
TGGCTTGCCAAACATGCCTTGGAAAATATGATTAATGATCTTCATCGAGCCATTCAGCGTACAC
AGTCTGCAATGTTTAATCAAGTTCTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
TTTTACAGACAAAACAAGAGAGCACATGTATCATGTGACTTTGGGATTTACTGAAACTTTGACA
TTTTCTCAAAGCATTTGTGGAATTCAGCATCTGGAACGAATTGGAAAGAAACTCAATCTCTTTG
ACTCCCTTTATTTCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTTACTCCTGAAAC
ATGGTCCTCCAAGCTTTTTGTTGTTGCTATGATCTGCGTTGCTCTTGTAGTTCTCCCCATACAG
TTTGAACAGCTGGCCTATTTGTGGATGGAGAGACAAAAGTCGGGAGGAAACTATAGTCGACACA
GAGCTCAGACTGAGAAGCATGTTGTTCTGTGTGTCAGCTCATTGAAGATTGACTTGCTTATGGA
TTTTTTGAATGAATTCTATGCACATCCAAGACTGCAGGATTATTATGTGGTGATTTTGTGTCCC
ACGGAGATGGATGTGCAAGTTCGGAGAGTGCTACAGATTCCAATGTGGTCCCAGAGAGTGATCT
ACCTTCAAGGCTCTGCCCTTAAAGACCAGGATCTCCTGAGAGCAAAGATGGACAATGCTGAGGC
CTGTTTCATTTTGAGTAGCCGCTGTGAAGTCGATAGAACATCATCTGATCACCAGACAATTTTG
AGAGCATGGGCTGTAAAAGATTTTGCCCCAAATTGTCCTCTGTATGTTCAGATATTAAAACCAG
AAAATAAATTCCACATCAAATTTGCAGATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCAT
GTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCT
AGAGGGCAAGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAA
ATGAAGTCTACCACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTT
TACCTATGCTTCTTTCCATGCACACAAAAAGTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAG
GATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTT
TTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAG
TAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGC
ATGGGTACTGTGGCTATAGACTTACAAGACACAAGCTGTAGAGCAGCAAGTGGCCCTACACTGG
CTCTTCCTTCAGAGGGAGGCAAGGAACTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTAGC
AGATACATCATCAATTCAAACCTGCGATCTTCTAAGTGACCAGTCAGAAGATGAAACTACACCA
GATGAAGAAACATCTTCAAATTTAGAGTATGCCAAAGGCTACCCACCTTATTCTCCATACATAG
GAAGTTCACCTACTTTTTGTCATCTACTTCAAGAAAAAGTGCCCTTTTGCTGCTTAAGATTAGA
CAAGAGTTGCCAGCATAACTACTATGAGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATT
ATAGTTGCAGCTGAAACGGCTGGGAACGGATTATATAATTTTATTGTACCTCTCAGGGCATATT
ATAGACCAAAGAAAGAATTAAATCCCATAGTTCTTCTATTGGATAATCCGCCAGATATGCATTT
TCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAACCTAGAT
GATTTGCTCAGGTGTGGAGTGACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCA
TGAGTGCAGAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAG
GTTGTTTTCGAGTCTCAGTATTATCACTGAGCTTACTCATCCAGCAAATATGAGATTCATGCAA
TTCAGAGCCAAGGACTGTTACTCTCTTGCACTTTCAAAACTGGAAAAGAAAGAGCGAGAACGAG
GTTCTAACCTGGCCTTCATGTTCCGACTGCCTTTCGCTGCGGGGAGAGTGTTCAGCATCAGTAT
GCTGGACACGCTGCTTTATCAGTCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTT
TTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCTATGAAAATTACTGAAGATGACT
TGTGGATCAGAACGTATGCCAGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCAT
TGGGATCTACAGAACAGAATCTCAGAAGCTAACTACATCTGAGTCTCGAGAAATAGCATCTCAA
TCTCAAATATCCATCAGTGTGGAAGAGTGGGAAGACACCAAAGATGTCAAAGACCCAGGGCACC
ACCGCAGCATTCACCGCAACTCAACCTCTAGCGACCAGTCAGACCACCCCTTGCTGCGGAGGAA
GAGCATGCAGTGGGCCCGGAGGCTGAGCAGAAAAGGGCCAAAGCACTCTGGTAAAACTGCAGAA
AAGATAACCCAGCAACGACTGAATCTCTACAGGAGGTCGGAAAGACAGGAGCTTGCTGAACTTG
TGAAAAACAGAATGAAACACCTGGGCCTCTCTACGGTGGGCTACGATGAAATGAATGATCATCA
GAGCACCCTTTCCTACATCCTGATTAATCCATCTCCAGACACCAGGCTTGAGCTGAATGATGTT
GTATATTTGATCCGACCAGATCCACTGTCCTACCTTCCGAACAGTGAACCCAGTAGGAAAAACA
GCATCTGCAATGCCGCTGTTCAAGATTCTCGGGAGGAAACACAACTCTGATGAAAAGAAAATAA
GAGACATTATATTCCTTGCAGGGATCTTGCTTAAAATCATTAAAATGTTGCAGATTGTCTAAAG
AAGCTGACTGGAATGTATTCAATTTCTCATGTTGCTTCTATATAAAACAAAATCTATTCTCTTT
GAAGTACAGATCATTTTGAAACATAATGTGATATTTGTTGACATTTTCCTGCTTAATATTTCAA
CTTCATTGGAGGAGATTCTCAAAATAACTATAAAATGCAGAAATGAAAAATCTGATATTTAGTT
GTTTAAGAACTAAGAGTGTATAAAAATTTTAAAATCCACCTATATTAAGTACATCATAAGAACA
CAGAAGATTCATTTTCTTTTTATAGTTAAATATGTCATTATATTGTTGAAAATTGTTGTTTTTA
AAATTGAGCCCATTAAGAATTAATGCGTATCTCTATATGGAGATTAACCACTAACTTACATGGC
TGACTTCTGTCTAGGCATCATAGTTTGCTTCAGAGTAGATCTTTAACGTCATTTCTGTCTTTCC
ATATTACTGTATTTACTTTAGAATCTGAGCTATCCATAGCATGATTAATTTTACAGAAGAAACT
AAAACACAAAGGAATATTGAGCACCTGAGCTTTTTTAGTAACTTTACATCAAATGCACATTTTA
TGC

hide sequence

RefSeq Acc Id:

XM_017598803 ⟹ XP_017454292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,833 - 54,609,889 (+)	NCBI
mRatBN7.2	13	51,664,130 - 52,059,209 (+)	NCBI
Rnor_6.0	13	57,130,855 - 57,520,263 (+)	NCBI

Sequence:

show sequence

CTAGGAAAGACCTGTACCGGGAGAGCCTGAGCCCACCGCCTTCGCCCGGCTGCGCCCAGTGCTT
GCTCTTCTGGCGAAAGAGCTGCGGTCGGGGATGCCCTAGTGGGAGGCTCTGGTCCTTGCCTTTC
AGGAAAGTGCCTAGCCATCACGCGGTGCTCACACCCACCACCTGCCCTCTTTCTAGGCACCGCG
CGAATTTTCTTTTCCTTTTCTTTCTTTTTTTTTTTTCTGTTCTTTTTTTGTCGGTGAAGTAACT
TTTGCATCCCCGCCTCCCCCCGGTTCTAGGAACCAGAGGCGGCGCCGAGCTTGGGGGCGGTTCC
TTGGCAGCGCTGGTTCAAGTCGCAGCCAGACTTTTGCTCCTGGGCTCGGTTTGCATCATCCCCA
TCACACCCTCGGGGAAGAGGAGCCACCCCTTTCCAGTCTCAGCTTCCGGCCGAACGACCCCTCC
CCCTCCGGGTCCCCCCATCCCCCGGCCCTTCTCCCACCCTCCCCAGCACGGCAACCCCCTCCGC
AGGGCTTGCTGGCCCTTTCTGCCCTCCTCCATCCCTTGTTGGATGTTGCCCATTCCTTAAGAAA
GGATGGTTGATTTGGAGAGCGAAGTACCCCCTCTGCCTCCCAGGTACAGATTCCGTGATTTGCT
GCTAGGGGACCAAGGCTGGCAGAATGATGACAGGGTTCAAGTCGAATTCTACATGAATGAAAAC
ACATTTAAAGAGAGATTAAAGTTGTTTTTCATAAAAAACCAGCGATCAAGTCTAAGAATCCGCT
TGTTCAACTTTTCCCTCAAATTGTTAAGCTGTTTGTTATACATTATCCGTGTGTTGCTTGAGAA
ACCTTCACAGGGAAATGATTGGTCTCACATATTTTGGGTTAACAGAAGCCTGCCTTTATGGGGT
TTACAGGTCTCGGTGGCATTGATAAGTCTATTTGAAACAATACTCCTTGGATATCTCAGTTATA
AGGGGAATATCTGGGAGCAGATTTTACGAGTTCCATTCATCTTGGAAATAATCAATGCAGTTCC
CTTCATCATCTCAATATTCTGGCCTACGTTAAGAAATCTCTTTGTTCCAGTTTTTCTAAATTGT
TGGCTTGCCAAACATGCCTTGGAAAATATGATTAATGATCTTCATCGAGCCATTCAGCGTACAC
AGTCTGCAATGTTTAATCAAGTTCTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
TTTTACAGACAAAACAAGAGAGCACATGTATCATGTGACTTTGGGATTTACTGAAACTTTGACA
TTTTCTCAAAGCATTTGTGGAATTCAGCATCTGGAACGAATTGGAAAGAAACTCAATCTCTTTG
ACTCCCTTTATTTCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTTACTCCTGAAAC
ATGGTCCTCCAAGCTTTTTGTTGTTGCTATGATCTGCGTTGCTCTTGTAGTTCTCCCCATACAG
TTTGAACAGCTGGCCTATTTGTGGATGGAGAGACAAAAGTCGGGAGGAAACTATAGTCGACACA
GAGCTCAGACTGAGAAGCATGTTGTTCTGTGTGTCAGCTCATTGAAGATTGACTTGCTTATGGA
TTTTTTGAATGAATTCTATGCACATCCAAGACTGCAGGATTATTATGTGGTGATTTTGTGTCCC
ACGGAGATGGATGTGCAAGTTCGGAGAGTGCTACAGATTCCAATGTGGTCCCAGAGAGTGATCT
ACCTTCAAGGCTCTGCCCTTAAAGACCAGGATCTCCTGAGAGCAAAGATGGACAATGCTGAGGC
CTGTTTCATTTTGAGTAGCCGCTGTGAAGTCGATAGAACATCATCTGATCACCAGACAATTTTG
AGAGCATGGGCTGTAAAAGATTTTGCCCCAAATTGTCCTCTGTATGTTCAGATATTAAAACCAG
AAAATAAATTCCACATCAAATTTGCAGATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCAT
GTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCT
AGAGGGCAAGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAA
ATGAAGTCTACCACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTT
TACCTATGCTTCTTTCCATGCACACAAAAAGTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAG
GATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTT
TTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAG
TAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGC
ATGGGTACTGTGGCTATAGACTTACAAGACACAAGCTGTAGAGCAGCAAGTGGCCCTACACTGG
CTCTTCCTTCAGAGGGAGGCAAGGAACTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTAGC
AGATACATCATCAATTCAAACCTGCGATCTTCTAAGTGACCAGTCAGAAGATGAAACTACACCA
GATGAAGAAACATCTTCAAATTTAGAGTATGCCAAAGGCTACCCACCTTATTCTCCATACATAG
GAAGTTCACCTACTTTTTGTCATCTACTTCAAGAAAAAGTGCCCTTTTGCTGCTTAAGATTAGA
CAAGAGTTGCCAGCATAACTACTATGAGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATT
ATAGTTGCAGCTGAAACGGCTGGGAACGGATTATATAATTTTATTGTACCTCTCAGGGCATATT
ATAGACCAAAGAAAGAATTAAATCCCATAGTTCTTCTATTGGATAATCCCCTAGATGATTTGCT
CAGGTGTGGAGTGACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCATGAGTGCA
GAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAGGTTGTTTT
CGAGTCTCAGTATTATCACTGAGCTTACTCATCCAGCAAATATGAGATTCATGCAATTCAGAGC
CAAGGACTGTTACTCTCTTGCACTTTCAAAACTGGAAAAGAAAGAGCGAGAACGAGGTTCTAAC
CTGGCCTTCATGTTCCGACTGCCTTTCGCTGCGGGGAGAGTGTTCAGCATCAGTATGCTGGACA
CGCTGCTTTATCAGTCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACT
GGACACCATACCAGGATCGGGGTTTCTTTGTTCTATGAAAATTACTGAAGATGACTTGTGGATC
AGAACGTATGCCAGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCATTGGGATCT
ACAGAACAGAATCTCAGAAGCTAACTACATCTGAGTCTCGAGAAATAGCATCTCAATCTCAAAT
ATCCATCAGTGTGGAAGAGTGGGAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGC
ATTCACCGCAACTCAACCTCTAGCGACCAGTCAGACCACCCCTTGCTGCGGAGGAAGAGCATGC
AGTGGGCCCGGAGGCTGAGCAGAAAAGGGCCAAAGCACTCTGGTAAAACTGCAGAAAAGATAAC
CCAGCAACGACTGAATCTCTACAGGAGGTCGGAAAGACAGGAGCTTGCTGAACTTGTGAAAAAC
AGAATGAAACACCTGGGCCTCTCTACGGTGGGCTACGATGAAATGAATGATCATCAGAGCACCC
TTTCCTACATCCTGATTAATCCATCTCCAGACACCAGGCTTGAGCTGAATGATGTTGTATATTT
GATCCGACCAGATCCACTGTCCTACCTTCCGAACAGTGAACCCAGTAGGAAAAACAGCATCTGC
AATGCCGCTGTTCAAGATTCTCGGGAGGAAACACAACTCTGATGAAAAGAAAATAAGAGACATT
ATATTCCTTGCAGGGATCTTGCTTAAAATCATTAAAATGTTGCAGATTGTCTAAAGAAGCTGAC
TGGAATGTATTCAATTTCTCATGTTGCTTCTATATAAAACAAAATCTATTCTCTTTGAAGTACA
GATCATTTTGAAACATAATGTGATATTTGTTGACATTTTCCTGCTTAATATTTCAACTTCATTG
GAGGAGATTCTCAAAATAACTATAAAATGCAGAAATGAAAAATCTGATATTTAGTTGTTTAAGA
ACTAAGAGTGTATAAAAATTTTAAAATCCACCTATATTAAGTACATCATAAGAACACAGAAGAT
TCATTTTCTTTTTATAGTTAAATATGTCATTATATTGTTGAAAATTGTTGTTTTTAAAATTGAG
CCCATTAAGAATTAATGCGTATCTCTATATGGAGATTAACCACTAACTTACATGGCTGACTTCT
GTCTAGGCATCATAGTTTGCTTCAGAGTAGATCTTTAACGTCATTTCTGTCTTTCCATATTACT
GTATTTACTTTAGAATCTGAGCTATCCATAGCATGATTAATTTTACAGAAGAAACTAAAACACA
AAGGAATATTGAGCACCTGAGCTTTTTTAGTAACTTTACATCAAATGCACATTTTATGC

hide sequence

RefSeq Acc Id:

XM_017598804 ⟹ XP_017454293

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,835 - 54,609,889 (+)	NCBI
mRatBN7.2	13	51,664,131 - 52,059,209 (+)	NCBI
Rnor_6.0	13	57,130,855 - 57,520,263 (+)	NCBI

Sequence:

show sequence

CTAGGAAAGACCTGTACCGGGAGAGCCTGAGCCCACCGCCTTCGCCCGGCTGCGCCCAGTGCTT
GCTCTTCTGGCGAAAGAGCTGCGGTCGGGGATGCCCTAGTGGGAGGCTCTGGTCCTTGCCTTTC
AGGAAAGTGCCTAGCCATCACGCGGTGCTCACACCCACCACCTGCCCTCTTTCTAGGCACCGCG
CGAATTTTCTTTTCCTTTTCTTTCTTTTTTTTTTTTCTGTTCTTTTTTTGTCGGTGAAGTAACT
TTTGCATCCCCGCCTCCCCCCGGTTCTAGGAACCAGAGGCGGCGCCGAGCTTGGGGGCGGTTCC
TTGGCAGCGCTGGTTCAAGTCGCAGCCAGACTTTTGCTCCTGGGCTCGGTTTGCATCATCCCCA
TCACACCCTCGGGGAAGAGGAGCCACCCCTTTCCAGTCTCAGCTTCCGGCCGAACGACCCCTCC
CCCTCCGGGTCCCCCCATCCCCCGGCCCTTCTCCCACCCTCCCCAGCACGGCAACCCCCTCCGC
AGGGCTTGCTGGCCCTTTCTGCCCTCCTCCATCCCTTGTTGGATGTTGCCCATTCCTTAAGAAA
GGATGGTTGATTTGGAGAGCGAAGTACCCCCTCTGCCTCCCAGGTACAGATTCCGTGATTTGCT
GCTAGGGGACCAAGGCTGGCAGAATGATGACAGGGTTCAAGTCGAATTCTACATGAATGAAAAC
ACATTTAAAGAGAGATTAAAGTTGTTTTTCATAAAAAACCAGCGATCAAGTCTAAGAATCCGCT
TGTTCAACTTTTCCCTCAAATTGTTAAGCTGTTTGTTATACATTATCCGTGTGTTGCTTGAGAA
ACCTTCACAGGGAAATGATTGGTCTCACATATTTTGGGTTAACAGAAGCCTGCCTTTATGGGGT
TTACAGGTCTCGGTGGCATTGATAAGTCTATTTGAAACAATACTCCTTGGATATCTCAGTTATA
AGGGGAATATCTGGGAGCAGATTTTACGAGTTCCATTCATCTTGGAAATAATCAATGCAGTTCC
CTTCATCATCTCAATATTCTGGCCTACGTTAAGAAATCTCTTTGTTCCAGTTTTTCTAAATTGT
TGGCTTGCCAAACATGCCTTGGAAAATATGATTAATGATCTTCATCGAGCCATTCAGCGTACAC
AGTCTGCAATGTTTAATCAAGTTCTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
CATTTGTGGAATTCAGCATCTGGAACGAATTGGAAAGAAACTCAATCTCTTTGACTCCCTTTAT
TTCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTTACTCCTGAAACATGGTCCTCCA
AGCTTTTTGTTGTTGCTATGATCTGCGTTGCTCTTGTAGTTCTCCCCATACAGTTTGAACAGCT
GGCCTATTTGTGGATGGAGAGACAAAAGTCGGGAGGAAACTATAGTCGACACAGAGCTCAGACT
GAGAAGCATGTTGTTCTGTGTGTCAGCTCATTGAAGATTGACTTGCTTATGGATTTTTTGAATG
AATTCTATGCACATCCAAGACTGCAGGATTATTATGTGGTGATTTTGTGTCCCACGGAGATGGA
TGTGCAAGTTCGGAGAGTGCTACAGATTCCAATGTGGTCCCAGAGAGTGATCTACCTTCAAGGC
TCTGCCCTTAAAGACCAGGATCTCCTGAGAGCAAAGATGGACAATGCTGAGGCCTGTTTCATTT
TGAGTAGCCGCTGTGAAGTCGATAGAACATCATCTGATCACCAGACAATTTTGAGAGCATGGGC
TGTAAAAGATTTTGCCCCAAATTGTCCTCTGTATGTTCAGATATTAAAACCAGAAAATAAATTC
CACATCAAATTTGCAGATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCATGTTAGCTTTAA
ACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCAAGA
AGGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAAATGAAGTCTAC
CACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTT
CTTTCCATGCACACAAAAAGTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAA
CATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAAT
ATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAA
GGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGCATGGGTACTGT
GGCTATAGACTTACAAGACACAAGCTGTAGAGCAGCAAGTGGCCCTACACTGGCTCTTCCTTCA
GAGGGAGGCAAGGAACTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTAGCAGATACATCAT
CAATTCAAACCTGCGATCTTCTAAGTGACCAGTCAGAAGATGAAACTACACCAGATGAAGAAAC
ATCTTCAAATTTAGAGTATGCCAAAGGCTACCCACCTTATTCTCCATACATAGGAAGTTCACCT
ACTTTTTGTCATCTACTTCAAGAAAAAGTGCCCTTTTGCTGCTTAAGATTAGACAAGAGTTGCC
AGCATAACTACTATGAGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGC
TGAAACGGCTGGGAACGGATTATATAATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAG
AAAGAATTAAATCCCATAGTTCTTCTATTGGATAATCCGCCAGATATGCATTTTCTGGATGCAA
TCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAACCTAGATGATTTGCTCAG
GTGTGGAGTGACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCATGAGTGCAGAG
GAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAGGTTGTTTTCGA
GTCTCAGTATTATCACTGAGCTTACTCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAA
GGACTGTTACTCTCTTGCACTTTCAAAACTGGAAAAGAAAGAGCGAGAACGAGGTTCTAACCTG
GCCTTCATGTTCCGACTGCCTTTCGCTGCGGGGAGAGTGTTCAGCATCAGTATGCTGGACACGC
TGCTTTATCAGTCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGA
CACCATACCAGGATCGGGGTTTCTTTGTTCTATGAAAATTACTGAAGATGACTTGTGGATCAGA
ACGTATGCCAGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCATTGGGATCTACA
GAACAGAATCTCAGAAGCTAACTACATCTGAGTCTCGAGAAATAGCATCTCAATCTCAAATATC
CATCAGTGTGGAAGAGTGGGAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGCATT
CACCGCAACTCAACCTCTAGCGACCAGTCAGACCACCCCTTGCTGCGGAGGAAGAGCATGCAGT
GGGCCCGGAGGCTGAGCAGAAAAGGGCCAAAGCACTCTGGTAAAACTGCAGAAAAGATAACCCA
GCAACGACTGAATCTCTACAGGAGGTCGGAAAGACAGGAGCTTGCTGAACTTGTGAAAAACAGA
ATGAAACACCTGGGCCTCTCTACGGTGGGCTACGATGAAATGAATGATCATCAGAGCACCCTTT
CCTACATCCTGATTAATCCATCTCCAGACACCAGGCTTGAGCTGAATGATGTTGTATATTTGAT
CCGACCAGATCCACTGTCCTACCTTCCGAACAGTGAACCCAGTAGGAAAAACAGCATCTGCAAT
GCCGCTGTTCAAGATTCTCGGGAGGAAACACAACTCTGATGAAAAGAAAATAAGAGACATTATA
TTCCTTGCAGGGATCTTGCTTAAAATCATTAAAATGTTGCAGATTGTCTAAAGAAGCTGACTGG
AATGTATTCAATTTCTCATGTTGCTTCTATATAAAACAAAATCTATTCTCTTTGAAGTACAGAT
CATTTTGAAACATAATGTGATATTTGTTGACATTTTCCTGCTTAATATTTCAACTTCATTGGAG
GAGATTCTCAAAATAACTATAAAATGCAGAAATGAAAAATCTGATATTTAGTTGTTTAAGAACT
AAGAGTGTATAAAAATTTTAAAATCCACCTATATTAAGTACATCATAAGAACACAGAAGATTCA
TTTTCTTTTTATAGTTAAATATGTCATTATATTGTTGAAAATTGTTGTTTTTAAAATTGAGCCC
ATTAAGAATTAATGCGTATCTCTATATGGAGATTAACCACTAACTTACATGGCTGACTTCTGTC
TAGGCATCATAGTTTGCTTCAGAGTAGATCTTTAACGTCATTTCTGTCTTTCCATATTACTGTA
TTTACTTTAGAATCTGAGCTATCCATAGCATGATTAATTTTACAGAAGAAACTAAAACACAAAG
GAATATTGAGCACCTGAGCTTTTTTAGTAACTTTACATCAAATGCACATTTTATGC

hide sequence

RefSeq Acc Id:

XM_039090723 ⟹ XP_038946651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,837 - 54,609,889 (+)	NCBI
mRatBN7.2	13	51,664,131 - 52,059,209 (+)	NCBI

RefSeq Acc Id:

XM_039090726 ⟹ XP_038946654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,832 - 54,514,465 (+)	NCBI
mRatBN7.2	13	51,664,130 - 51,963,784 (+)	NCBI

RefSeq Acc Id:

XM_039090727 ⟹ XP_038946655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,398,142 - 54,609,889 (+)	NCBI
mRatBN7.2	13	51,847,463 - 52,059,209 (+)	NCBI

RefSeq Acc Id:

XM_039090728 ⟹ XP_038946656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,833 - 54,514,464 (+)	NCBI
mRatBN7.2	13	51,664,130 - 51,963,779 (+)	NCBI

RefSeq Acc Id:

XM_063272313 ⟹ XP_063128383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,834 - 54,609,889 (+)	NCBI

RefSeq Acc Id:

XR_005492244

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,831 - 54,585,985 (+)	NCBI
mRatBN7.2	13	51,664,130 - 52,035,300 (+)	NCBI

RefSeq Acc Id:

XR_010056918

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	54,214,831 - 54,559,054 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_942057	(Get FASTA)	NCBI Sequence Viewer
	XP_006250005	(Get FASTA)	NCBI Sequence Viewer
	XP_017454291	(Get FASTA)	NCBI Sequence Viewer
	XP_017454292	(Get FASTA)	NCBI Sequence Viewer
	XP_017454293	(Get FASTA)	NCBI Sequence Viewer
	XP_038946651	(Get FASTA)	NCBI Sequence Viewer
	XP_038946654	(Get FASTA)	NCBI Sequence Viewer
	XP_038946655	(Get FASTA)	NCBI Sequence Viewer
	XP_038946656	(Get FASTA)	NCBI Sequence Viewer
	XP_063128383	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAR06169	(Get FASTA)	NCBI Sequence Viewer
	EDM09614	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017884
	ENSRNOP00000093596
GenBank Protein	Q6UVM4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_942057 ⟸ NM_198762

- UniProtKB:

Q6UVM4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTFKERLKLFFIKNQRSSLRIRL
FNFSLKLLSCLLYIIRVLLEKPSQGNDWSHIFWVNRSLPLWGLQVSVALISLFETILLGYLSYK
GNIWEQILRVPFILEIINAVPFIISIFWPTLRNLFVPVFLNCWLAKHALENMINDLHRAIQRTQ
SAMFNQVLILISTLLCLIFTCICGIQHLERIGKKLNLFDSLYFCIVTFSTVGFGDVTPETWSSK
LFVVAMICVALVVLPIQFEQLAYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNE
FYAHPRLQDYYVVILCPTEMDVQVRRVLQIPMWSQRVIYLQGSALKDQDLLRAKMDNAEACFIL
SSRCEVDRTSSDHQTILRAWAVKDFAPNCPLYVQILKPENKFHIKFADHVVCEEEFKYAMLALN
CICPATSTLITLLVHTSRGQCVCLCCREGQQSPEQWQKTYGRCSGNEVYHIVLEESTFFAEYEG
KSFTYASFHAHKKFGVCLVGVRREDNKNILLNPGPRYIMNASDICFYINITKEENSAFKNQDQQ
RKSNVSRSFYHGPSRLPVHSIIASMGTVAIDLQDTSCRAASGPTLALPSEGGKELRRPSIAPVL
EVADTSSIQTCDLLSDQSEDETTPDEETSSNLEYAKGYPPYSPYIGSSPTFCHLLQEKVPFCCL
RLDKSCQHNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLRAYYRPKKELNPIVLLLDNPPD
MHFLDAICWFPMVYYMVGSIDNLDDLLRCGVTFAANMVVVDKESTMSAEEDYMADAKTIVNVQT
LFRLFSSLSIITELTHPANMRFMQFRAKDCYSLALSKLEKKERERGSNLAFMFRLPFAAGRVFS
ISMLDTLLYQSFVKDYMISITRLLLGLDTIPGSGFLCSMKITEDDLWIRTYARLYQKLCSSTGD
VPIGIYRTESQKLTTSESQISISVEEWEDTKDVKDPGHHRSIHRNSTSSDQSDHPLLRRKSMQW
ARRLSRKGPKHSGKTAEKITQQRLNLYRRSERQELAELVKNRMKHLGLSTVGYDEMNDHQSTLS
YILINPSPDTRLELNDVVYLIRPDPLSYLPNSEPSRKNSICNAAVQDSREETQL

hide sequence

RefSeq Acc Id:	XP_006250005 ⟸ XM_006249943
- Peptide Label:	isoform X5
- UniProtKB:	Q6UVM4 (UniProtKB/Swiss-Prot), A0A8L2UJ52 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTFKERLKLFFIKNQRSSLRIRL FNFSLKLLSCLLYIIRVLLEKPSQGNDWSHIFWVNRSLPLWGLQVSVALISLFETILLGYLSYK GNIWEQILRVPFILEIINAVPFIISIFWPTLRNLFVPVFLNCWLAKHALENMINDLHRAIQRTQ SAMFNQVLILISTLLCLIFTCICGIQHLERIGKKLNLFDSLYFCIVTFSTVGFGDVTPETWSSK LFVVAMICVALVVLPIQFEQLAYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNE FYAHPRLQDYYVVILCPTEMDVQVRRVLQIPMWSQRVIYLQGSALKDQDLLRAKMDNAEACFIL SSRCEVDRTSSDHQTILRAWAVKDFAPNCPLYVQILKPENKFHIKFADHVVCEEEFKYAMLALN CICPATSTLITLLVHTSRGQEGQQSPEQWQKTYGRCSGNEVYHIVLEESTFFAEYEGKSFTYAS FHAHKKFGVCLVGVRREDNKNILLNPGPRYIMNASDICFYINITKEENSAFKNQDQQRKSNVSR SFYHGPSRLPVHSIIASMGTVAIDLQDTSCRAASGPTLALPSEGGKELRRPSIAPVLEVADTSS IQTCDLLSDQSEDETTPDEETSSNLEYAKGYPPYSPYIGSSPTFCHLLQEKVPFCCLRLDKSCQ HNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLRAYYRPKKELNPIVLLLDNPLDDLLRCGV TFAANMVVVDKESTMSAEEDYMADAKTIVNVQTLFRLFSSLSIITELTHPANMRFMQFRAKDCY SLALSKLEKKERERGSNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMISITRLLLGLDTIP GSGFLCSMKITEDDLWIRTYARLYQKLCSSTGDVPIGIYRTESQKLTTSESQISISVEEWEDTK DVKDPGHHRSIHRNSTSSDQSDHPLLRRKSMQWARRLSRKGPKHSGKTAEKITQQRLNLYRRSE RQELAELVKNRMKHLGLSTVGYDEMNDHQSTLSYILINPSPDTRLELNDVVYLIRPDPLSYLPN SEPSRKNSICNAAVQDSREETQL hide sequence

RefSeq Acc Id:	XP_017454291 ⟸ XM_017598802
- Peptide Label:	isoform X1
- UniProtKB:	Q6UVM4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTFKERLKLFFIKNQRSSLRIRL FNFSLKLLSCLLYIIRVLLEKPSQGNDWSHIFWVNRSLPLWGLQVSVALISLFETILLGYLSYK GNIWEQILRVPFILEIINAVPFIISIFWPTLRNLFVPVFLNCWLAKHALENMINDLHRAIQRTQ SAMFNQVLILISTLLCLIFTCFTDKTREHMYHVTLGFTETLTFSQSICGIQHLERIGKKLNLFD SLYFCIVTFSTVGFGDVTPETWSSKLFVVAMICVALVVLPIQFEQLAYLWMERQKSGGNYSRHR AQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDVQVRRVLQIPMWSQRVIY LQGSALKDQDLLRAKMDNAEACFILSSRCEVDRTSSDHQTILRAWAVKDFAPNCPLYVQILKPE NKFHIKFADHVVCEEEFKYAMLALNCICPATSTLITLLVHTSRGQEGQQSPEQWQKTYGRCSGN EVYHIVLEESTFFAEYEGKSFTYASFHAHKKFGVCLVGVRREDNKNILLNPGPRYIMNASDICF YINITKEENSAFKNQDQQRKSNVSRSFYHGPSRLPVHSIIASMGTVAIDLQDTSCRAASGPTLA LPSEGGKELRRPSIAPVLEVADTSSIQTCDLLSDQSEDETTPDEETSSNLEYAKGYPPYSPYIG SSPTFCHLLQEKVPFCCLRLDKSCQHNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLRAYY RPKKELNPIVLLLDNPPDMHFLDAICWFPMVYYMVGSIDNLDDLLRCGVTFAANMVVVDKESTM SAEEDYMADAKTIVNVQTLFRLFSSLSIITELTHPANMRFMQFRAKDCYSLALSKLEKKERERG SNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMISITRLLLGLDTIPGSGFLCSMKITEDDL WIRTYARLYQKLCSSTGDVPIGIYRTESQKLTTSESREIASQSQISISVEEWEDTKDVKDPGHH RSIHRNSTSSDQSDHPLLRRKSMQWARRLSRKGPKHSGKTAEKITQQRLNLYRRSERQELAELV KNRMKHLGLSTVGYDEMNDHQSTLSYILINPSPDTRLELNDVVYLIRPDPLSYLPNSEPSRKNS ICNAAVQDSREETQL hide sequence

RefSeq Acc Id:	XP_017454292 ⟸ XM_017598803
- Peptide Label:	isoform X3
- UniProtKB:	Q6UVM4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTFKERLKLFFIKNQRSSLRIRL FNFSLKLLSCLLYIIRVLLEKPSQGNDWSHIFWVNRSLPLWGLQVSVALISLFETILLGYLSYK GNIWEQILRVPFILEIINAVPFIISIFWPTLRNLFVPVFLNCWLAKHALENMINDLHRAIQRTQ SAMFNQVLILISTLLCLIFTCFTDKTREHMYHVTLGFTETLTFSQSICGIQHLERIGKKLNLFD SLYFCIVTFSTVGFGDVTPETWSSKLFVVAMICVALVVLPIQFEQLAYLWMERQKSGGNYSRHR AQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDVQVRRVLQIPMWSQRVIY LQGSALKDQDLLRAKMDNAEACFILSSRCEVDRTSSDHQTILRAWAVKDFAPNCPLYVQILKPE NKFHIKFADHVVCEEEFKYAMLALNCICPATSTLITLLVHTSRGQEGQQSPEQWQKTYGRCSGN EVYHIVLEESTFFAEYEGKSFTYASFHAHKKFGVCLVGVRREDNKNILLNPGPRYIMNASDICF YINITKEENSAFKNQDQQRKSNVSRSFYHGPSRLPVHSIIASMGTVAIDLQDTSCRAASGPTLA LPSEGGKELRRPSIAPVLEVADTSSIQTCDLLSDQSEDETTPDEETSSNLEYAKGYPPYSPYIG SSPTFCHLLQEKVPFCCLRLDKSCQHNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLRAYY RPKKELNPIVLLLDNPLDDLLRCGVTFAANMVVVDKESTMSAEEDYMADAKTIVNVQTLFRLFS SLSIITELTHPANMRFMQFRAKDCYSLALSKLEKKERERGSNLAFMFRLPFAAGRVFSISMLDT LLYQSFVKDYMISITRLLLGLDTIPGSGFLCSMKITEDDLWIRTYARLYQKLCSSTGDVPIGIY RTESQKLTTSESREIASQSQISISVEEWEDTKDVKDPGHHRSIHRNSTSSDQSDHPLLRRKSMQ WARRLSRKGPKHSGKTAEKITQQRLNLYRRSERQELAELVKNRMKHLGLSTVGYDEMNDHQSTL SYILINPSPDTRLELNDVVYLIRPDPLSYLPNSEPSRKNSICNAAVQDSREETQL hide sequence

RefSeq Acc Id:	XP_017454293 ⟸ XM_017598804
- Peptide Label:	isoform X4
- UniProtKB:	Q6UVM4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTFKERLKLFFIKNQRSSLRIRL FNFSLKLLSCLLYIIRVLLEKPSQGNDWSHIFWVNRSLPLWGLQVSVALISLFETILLGYLSYK GNIWEQILRVPFILEIINAVPFIISIFWPTLRNLFVPVFLNCWLAKHALENMINDLHRAIQRTQ SAMFNQVLILISTLLCLIFTCICGIQHLERIGKKLNLFDSLYFCIVTFSTVGFGDVTPETWSSK LFVVAMICVALVVLPIQFEQLAYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNE FYAHPRLQDYYVVILCPTEMDVQVRRVLQIPMWSQRVIYLQGSALKDQDLLRAKMDNAEACFIL SSRCEVDRTSSDHQTILRAWAVKDFAPNCPLYVQILKPENKFHIKFADHVVCEEEFKYAMLALN CICPATSTLITLLVHTSRGQEGQQSPEQWQKTYGRCSGNEVYHIVLEESTFFAEYEGKSFTYAS FHAHKKFGVCLVGVRREDNKNILLNPGPRYIMNASDICFYINITKEENSAFKNQDQQRKSNVSR SFYHGPSRLPVHSIIASMGTVAIDLQDTSCRAASGPTLALPSEGGKELRRPSIAPVLEVADTSS IQTCDLLSDQSEDETTPDEETSSNLEYAKGYPPYSPYIGSSPTFCHLLQEKVPFCCLRLDKSCQ HNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLRAYYRPKKELNPIVLLLDNPPDMHFLDAI CWFPMVYYMVGSIDNLDDLLRCGVTFAANMVVVDKESTMSAEEDYMADAKTIVNVQTLFRLFSS LSIITELTHPANMRFMQFRAKDCYSLALSKLEKKERERGSNLAFMFRLPFAAGRVFSISMLDTL LYQSFVKDYMISITRLLLGLDTIPGSGFLCSMKITEDDLWIRTYARLYQKLCSSTGDVPIGIYR TESQKLTTSESREIASQSQISISVEEWEDTKDVKDPGHHRSIHRNSTSSDQSDHPLLRRKSMQW ARRLSRKGPKHSGKTAEKITQQRLNLYRRSERQELAELVKNRMKHLGLSTVGYDEMNDHQSTLS YILINPSPDTRLELNDVVYLIRPDPLSYLPNSEPSRKNSICNAAVQDSREETQL hide sequence

Ensembl Acc Id:

ENSRNOP00000071443 ⟸ ENSRNOT00000083693

Ensembl Acc Id:

ENSRNOP00000017884 ⟸ ENSRNOT00000017884

RefSeq Acc Id:	XP_038946654 ⟸ XM_039090726
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038946656 ⟸ XM_039090728
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038946651 ⟸ XM_039090723
- Peptide Label:	isoform X2
- UniProtKB:	Q6UVM4 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038946655 ⟸ XM_039090727
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000093596 ⟸ ENSRNOT00000113684

RefSeq Acc Id:	XP_063128383 ⟸ XM_063272313
- Peptide Label:	isoform X9
- UniProtKB:	Q6UVM4 (UniProtKB/Swiss-Prot), A0A8I6AJ80 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101177 ⟸ ENSRNOT00000173161

Ensembl Acc Id:

ENSRNOP00000104709 ⟸ ENSRNOT00000137196

Protein Domains

RCK N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6UVM4-F1-model_v2	AlphaFold	Q6UVM4	1-1142	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735074	AgrOrtholog
BioCyc Gene	G2FUF-18062	BioCyc
Ensembl Genes	ENSRNOG00000013312	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000017884	ENTREZGENE
	ENSRNOT00000113684	ENTREZGENE
Gene3D-CATH	1.10.287.70	UniProtKB/Swiss-Prot
	NAD(P)-binding Rossmann-like Domain	UniProtKB/Swiss-Prot
InterPro	K_chnl_BK_asu	UniProtKB/Swiss-Prot
	K_chnl_dom	UniProtKB/Swiss-Prot
	K_chnl_Slo-like	UniProtKB/Swiss-Prot
	NAD(P)-bd_dom_sf	UniProtKB/Swiss-Prot
	RCK_N	UniProtKB/Swiss-Prot
KEGG Report	rno:304827	UniProtKB/Swiss-Prot
NCBI Gene	304827	ENTREZGENE
PANTHER	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	UniProtKB/Swiss-Prot
	POTASSIUM CHANNEL SUBFAMILY T MEMBER 2	UniProtKB/Swiss-Prot
Pfam	BK_channel_a	UniProtKB/Swiss-Prot
	Ion_trans_2	UniProtKB/Swiss-Prot
	Slo-like_RCK	UniProtKB/Swiss-Prot
PhenoGen	Kcnt2	PhenoGen
PROSITE	RCK_N	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000013312	RatGTEx
Superfamily-SCOP	SSF51735	UniProtKB/Swiss-Prot
	Voltage-gated potassium channels	UniProtKB/Swiss-Prot
UniProt	A0A0G2K0H1_RAT	UniProtKB/TrEMBL
	A0A8I6AJ80	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UJ52	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LI29_RAT	UniProtKB/TrEMBL
	A0ABK0LIZ8_RAT	UniProtKB/TrEMBL
	A6ICN3_RAT	UniProtKB/TrEMBL
	KCNT2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Kcnt2	potassium sodium-activated channel subfamily T member 2	Kcnt2	potassium channel, sodium-activated subfamily T, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-01-26	Kcnt2	potassium channel, sodium-activated subfamily T, member 2	Kcnt2	potassium channel, subfamily T, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Kcnt2	potassium channel, subfamily T, member 2	Slick	sodium- and chloride-activated ATP-sensitive potassium channel	Symbol and Name updated	1299863	APPROVED
2005-07-08	Slick	sodium- and chloride-activated ATP-sensitive potassium channel			Symbol and Name status set to approved	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	C-terminal ATP binding site is required for ATP to reduce the channel's open probability	1299633
gene_expression	expressed in the central nervous system and the heart	1299633

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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