C20h6orf89 (similar to human chromosome 6 open reading frame 89) - Rat Genome Database

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Gene: C20h6orf89 (similar to human chromosome 6 open reading frame 89) Rattus norvegicus
Analyze
Symbol: C20h6orf89
Name: similar to human chromosome 6 open reading frame 89
RGD ID: 735065
Description: Predicted to be involved in several processes, including chromatin remodeling; epithelial cell proliferation; and wound healing. Predicted to act upstream of or within several processes, including collagen metabolic process; connective tissue replacement; and response to bleomycin. Predicted to be located in several cellular components, including midbody; nucleolus; and plasma membrane. Predicted to be active in Golgi membrane. Orthologous to human C6orf89 (chromosome 6 open reading frame 89); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bombesin receptor-activated protein C6orf89 homolog; hypothetical protein LOC294311; MGC72991; RGD735065; similar to GI:13385412-like protein splice form I; uncharacterized protein C6orf89 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,324,105 - 7,368,482 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl207,324,129 - 7,363,666 (+)EnsemblGRCr8
mRatBN7.2207,322,483 - 7,362,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,322,442 - 7,357,612 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx208,033,525 - 8,067,200 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,395,383 - 7,429,059 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,870,092 - 7,901,201 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,869,870 - 6,910,022 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,869,767 - 6,905,194 (+)Ensemblrn6Rnor6.0
Rnor_5.0209,109,807 - 9,149,347 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4207,570,992 - 7,610,178 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera208,877,152 - 8,902,987 (+)NCBICelera
RGSC_v3.1207,584,738 - 7,610,405 (+)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO,ISS)
Golgi membrane  (IBA,IEA,ISO,ISS)
midbody  (IEA,ISO,ISS)
nucleolus  (ISO)
plasma membrane  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:21857995   PMID:23460338  


Genomics

Comparative Map Data
C20h6orf89
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,324,105 - 7,368,482 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl207,324,129 - 7,363,666 (+)EnsemblGRCr8
mRatBN7.2207,322,483 - 7,362,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,322,442 - 7,357,612 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx208,033,525 - 8,067,200 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,395,383 - 7,429,059 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,870,092 - 7,901,201 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,869,870 - 6,910,022 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,869,767 - 6,905,194 (+)Ensemblrn6Rnor6.0
Rnor_5.0209,109,807 - 9,149,347 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4207,570,992 - 7,610,178 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera208,877,152 - 8,902,987 (+)NCBICelera
RGSC_v3.1207,584,738 - 7,610,405 (+)NCBI
Cytogenetic Map20p12NCBI
C6orf89
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,871,844 - 36,928,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,871,870 - 36,928,964 (+)Ensemblhg38GRCh38
GRCh37636,839,620 - 36,896,740 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,961,618 - 37,004,718 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34636,961,709 - 37,000,309NCBI
Celera638,408,678 - 38,451,782 (+)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef636,571,953 - 36,615,024 (+)NCBIHuRef
CHM1_1636,855,574 - 36,898,647 (+)NCBICHM1_1
T2T-CHM13v2.0636,692,455 - 36,749,587 (+)NCBIT2T-CHM13v2.0
BC004004
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,487,762 - 29,521,862 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,487,762 - 29,533,039 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381729,268,788 - 29,302,888 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,268,788 - 29,314,065 (+)Ensemblmm10GRCm38
MGSCv371729,405,733 - 29,439,832 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361728,995,991 - 29,029,893 (+)NCBIMGSCv36mm8
Celera1729,819,156 - 29,852,507 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.17NCBI
LOC102023844
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554376,087,114 - 6,124,263 (-)Ensembl
ChiLan1.0NW_0049554376,087,297 - 6,124,219 (-)NCBIChiLan1.0ChiLan1.0
C5H6orf89
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,354,308 - 51,397,343 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,224,091 - 47,267,159 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,447,781 - 36,490,836 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,636,900 - 37,685,992 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,643,402 - 37,680,471 (+)EnsemblpanPan2panpan1.1
C12H6orf89
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,942,409 - 5,984,571 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,942,510 - 5,979,279 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha125,961,135 - 6,003,145 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0126,291,215 - 6,333,386 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,291,134 - 6,330,684 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,946,118 - 5,988,095 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,025,564 - 6,067,549 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0126,123,866 - 6,165,921 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH6orf89
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,415,257 - 41,459,469 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,504,741 - 22,542,137 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,504,741 - 22,544,970 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C7H6orf89
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,544,346 - 32,584,310 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1732,544,569 - 32,584,320 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,451,360 - 37,487,785 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C17H6orf89
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,215,797 - 35,249,769 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,216,916 - 35,249,624 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604436,818,822 - 36,864,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH6orf89
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475420,937,550 - 20,972,019 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475420,937,550 - 20,972,019 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
C18H6orf89
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1184,569,307 - 4,604,318 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C20h6orf89
311 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:29
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000000631
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
D17Mit101  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2207,321,764 - 7,321,977 (+)MAPPERmRatBN7.2
Rnor_6.0206,869,047 - 6,869,259NCBIRnor6.0
Rnor_5.0209,109,082 - 9,109,294UniSTSRnor5.0
RGSC_v3.4207,570,169 - 7,570,381UniSTSRGSC3.4
Celera208,875,907 - 8,876,119UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_199379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC062242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000000631   ⟹   ENSRNOP00000000631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,324,129 - 7,359,237 (+)Ensembl
mRatBN7.2 Ensembl207,336,168 - 7,357,612 (+)Ensembl
Rnor_6.0 Ensembl206,869,767 - 6,905,194 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086330   ⟹   ENSRNOP00000069508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,324,235 - 7,357,823 (+)Ensembl
mRatBN7.2 Ensembl207,322,442 - 7,356,269 (+)Ensembl
Rnor_6.0 Ensembl206,869,797 - 6,903,852 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093188   ⟹   ENSRNOP00000076178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,324,235 - 7,357,767 (+)Ensembl
mRatBN7.2 Ensembl207,322,579 - 7,356,147 (+)Ensembl
Rnor_6.0 Ensembl206,869,842 - 6,895,403 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,883,821 - 6,884,497 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093377   ⟹   ENSRNOP00000076078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,324,235 - 7,357,823 (+)Ensembl
mRatBN7.2 Ensembl207,322,579 - 7,356,203 (+)Ensembl
Rnor_6.0 Ensembl206,875,228 - 6,884,456 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093638   ⟹   ENSRNOP00000076127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,324,299 - 7,357,896 (+)Ensembl
mRatBN7.2 Ensembl207,322,579 - 7,356,274 (+)Ensembl
Rnor_6.0 Ensembl206,874,916 - 6,895,367 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093654   ⟹   ENSRNOP00000076097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,877,091 - 6,883,897 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093736   ⟹   ENSRNOP00000076205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,324,244 - 7,363,666 (+)Ensembl
mRatBN7.2 Ensembl207,322,688 - 7,357,612 (+)Ensembl
Rnor_6.0 Ensembl206,869,958 - 6,884,324 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102727   ⟹   ENSRNOP00000084100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,324,235 - 7,356,249 (+)Ensembl
mRatBN7.2 Ensembl207,322,579 - 7,354,628 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106155   ⟹   ENSRNOP00000080409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,324,244 - 7,362,592 (+)Ensembl
mRatBN7.2 Ensembl207,331,462 - 7,357,612 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171417   ⟹   ENSRNOP00000100153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,337,790 - 7,362,599 (+)Ensembl
RefSeq Acc Id: NM_199379   ⟹   NP_955411
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,161 - 7,357,894 (+)NCBI
mRatBN7.2207,322,538 - 7,356,274 (+)NCBI
Rnor_6.0206,869,870 - 6,903,850 (+)NCBI
Rnor_5.0209,109,807 - 9,149,347 (+)NCBI
RGSC_v3.4207,570,992 - 7,610,178 (+)RGD
Celera208,877,152 - 8,902,987 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256172   ⟹   XP_006256234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,271 - 7,368,482 (+)NCBI
mRatBN7.2207,322,642 - 7,362,054 (+)NCBI
Rnor_6.0206,869,932 - 6,910,022 (+)NCBI
Rnor_5.0209,109,807 - 9,149,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256181   ⟹   XP_006256243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,272 - 7,368,482 (+)NCBI
mRatBN7.2207,322,643 - 7,361,956 (+)NCBI
Rnor_6.0206,869,934 - 6,909,619 (+)NCBI
Rnor_5.0209,109,807 - 9,149,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256182   ⟹   XP_006256244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,249 - 7,357,898 (+)NCBI
mRatBN7.2207,322,648 - 7,357,618 (+)NCBI
Rnor_6.0206,869,938 - 6,905,194 (+)NCBI
Rnor_5.0209,109,807 - 9,149,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098520   ⟹   XP_038954448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,106 - 7,368,482 (+)NCBI
mRatBN7.2207,322,483 - 7,362,046 (+)NCBI
RefSeq Acc Id: XM_039098522   ⟹   XP_038954450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,105 - 7,368,482 (+)NCBI
mRatBN7.2207,322,513 - 7,362,046 (+)NCBI
RefSeq Acc Id: XM_039098524   ⟹   XP_038954452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,329,471 - 7,368,482 (+)NCBI
mRatBN7.2207,327,847 - 7,362,046 (+)NCBI
RefSeq Acc Id: XM_039098528   ⟹   XP_038954456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,106 - 7,357,898 (+)NCBI
mRatBN7.2207,322,483 - 7,356,281 (+)NCBI
RefSeq Acc Id: XM_039098529   ⟹   XP_038954457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,260 - 7,368,482 (+)NCBI
mRatBN7.2207,322,636 - 7,362,046 (+)NCBI
RefSeq Acc Id: XM_063279031   ⟹   XP_063135101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,271 - 7,368,482 (+)NCBI
RefSeq Acc Id: XM_063279032   ⟹   XP_063135102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,271 - 7,368,482 (+)NCBI
RefSeq Acc Id: XM_063279033   ⟹   XP_063135103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,271 - 7,368,482 (+)NCBI
RefSeq Acc Id: XM_063279034   ⟹   XP_063135104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,107 - 7,368,482 (+)NCBI
RefSeq Acc Id: XM_063279035   ⟹   XP_063135105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,260 - 7,357,898 (+)NCBI
RefSeq Acc Id: XM_063279036   ⟹   XP_063135106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,107 - 7,357,898 (+)NCBI
RefSeq Acc Id: XR_010060641
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,272 - 7,368,482 (+)NCBI
RefSeq Acc Id: XR_010060642
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,272 - 7,368,482 (+)NCBI
RefSeq Acc Id: XR_010060643
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,324,272 - 7,368,482 (+)NCBI
RefSeq Acc Id: NP_955411   ⟸   NM_199379
- UniProtKB: Q6P6G2 (UniProtKB/Swiss-Prot),   A6JJU4 (UniProtKB/TrEMBL),   A0A1W2Q646 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256234   ⟸   XM_006256172
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A1A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256243   ⟸   XM_006256181
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A1A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256244   ⟸   XM_006256182
- Peptide Label: isoform X5
- UniProtKB: A0A1W2Q6A8 (UniProtKB/TrEMBL),   A0A8I5ZPM7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000631   ⟸   ENSRNOT00000000631
Ensembl Acc Id: ENSRNOP00000076127   ⟸   ENSRNOT00000093638
Ensembl Acc Id: ENSRNOP00000076205   ⟸   ENSRNOT00000093736
Ensembl Acc Id: ENSRNOP00000076097   ⟸   ENSRNOT00000093654
Ensembl Acc Id: ENSRNOP00000076078   ⟸   ENSRNOT00000093377
Ensembl Acc Id: ENSRNOP00000076178   ⟸   ENSRNOT00000093188
Ensembl Acc Id: ENSRNOP00000069508   ⟸   ENSRNOT00000086330
RefSeq Acc Id: XP_038954448   ⟸   XM_039098520
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A1A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954456   ⟸   XM_039098528
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JVJ4 (UniProtKB/TrEMBL),   A0A8I5ZPM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954450   ⟸   XM_039098522
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A1A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954457   ⟸   XM_039098529
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038954452   ⟸   XM_039098524
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A1A0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084100   ⟸   ENSRNOT00000102727
Ensembl Acc Id: ENSRNOP00000080409   ⟸   ENSRNOT00000106155
RefSeq Acc Id: XP_063135104   ⟸   XM_063279034
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063135106   ⟸   XM_063279036
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063135105   ⟸   XM_063279035
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063135102   ⟸   XM_063279032
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A1A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135101   ⟸   XM_063279031
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A1A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135103   ⟸   XM_063279033
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A1A0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100153   ⟸   ENSRNOT00000171417

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P6G2-F1-model_v2 AlphaFold Q6P6G2 1-348 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701444
Promoter ID:EPDNEW_R11966
Type:initiation region
Name:RGD735065_1
Description:similar to GI:13385412-like protein splice form I
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11967  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0206,869,841 - 6,869,901EPDNEW
RGD ID:13701445
Promoter ID:EPDNEW_R11967
Type:initiation region
Name:RGD735065_2
Description:similar to GI:13385412-like protein splice form I
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11966  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0206,875,245 - 6,875,305EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735065 AgrOrtholog
BioCyc Gene G2FUF-4383 BioCyc
Ensembl Genes ENSRNOG00000000524 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000000631 ENTREZGENE
  ENSRNOT00000093638 ENTREZGENE
  ENSRNOT00000093736 ENTREZGENE
  ENSRNOT00000102727 ENTREZGENE
IMAGE_CLONE IMAGE:6888059 IMAGE-MGC_LOAD
InterPro BRAP UniProtKB/Swiss-Prot
KEGG Report rno:294311 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72991 IMAGE-MGC_LOAD
NCBI Gene 294311 ENTREZGENE
PANTHER BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89 UniProtKB/Swiss-Prot
  PTHR35259 UniProtKB/Swiss-Prot
PhenoGen C20h6orf89 PhenoGen
RatGTEx ENSRNOG00000000524 RatGTEx
UniProt A0A0G2JVJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q5Z5_RAT UniProtKB/TrEMBL
  A0A1W2Q646 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q684_RAT UniProtKB/TrEMBL
  A0A1W2Q6A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZPM7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1A0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2PYE9_RAT UniProtKB/TrEMBL
  A0ABK0LAZ1_RAT UniProtKB/TrEMBL
  A6JJU4 ENTREZGENE, UniProtKB/TrEMBL
  CF089_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C20h6orf89   similar to human chromosome 6 open reading frame 89  RGD735065  similar to GI:13385412-like protein splice form I  Symbol and Name Changed 1299863 APPROVED
2005-11-17 RGD735065  similar to GI:13385412-like protein splice form I      Symbol updated 1299863 APPROVED
2005-09-30 MGC72991        Symbol and Name status set to provisional 70820 PROVISIONAL