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Gene: Etfdh (electron transfer flavoprotein dehydrogenase) Rattus norvegicus

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Symbol:

Etfdh

Name:

electron transfer flavoprotein dehydrogenase

RGD ID:

735052

Description:

Enables electron transfer activity and iron-sulfur cluster binding activity. Predicted to be involved in electron transport chain; fatty acid beta-oxidation using acyl-CoA dehydrogenase; and response to oxidative stress. Located in mitochondrial membrane. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFDH (electron transfer flavoprotein dehydrogenase); PARTICIPATES IN fatty acid beta degradation pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4,6-trinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

electron transfer flavoprotein-ubiquinone oxidoreductase precursor; electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial; electron transferring flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase; ETF dehydrogenase; ETF-QO; ETF-ubiquinone oxidoreductase; MGC93785

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ETFDH (electron transfer flavoprotein dehydrogenase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Etfdh (electron transferring flavoprotein, dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Etfdh (electron transfer flavoprotein dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ETFDH (electron transfer flavoprotein dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ETFDH (electron transfer flavoprotein dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Etfdh (electron transfer flavoprotein dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ETFDH (electron transfer flavoprotein dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ETFDH (electron transfer flavoprotein dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Etfdh (electron transfer flavoprotein dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Etfdh (electron transfer flavoprotein dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ETFDH (electron transfer flavoprotein dehydrogenase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Etfdh (electron transferring flavoprotein, dehydrogenase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	etfdh (electron transfer flavoprotein dehydrogenase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CIR2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Etf-QO	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Etf-QO	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	let-721	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	etfdh	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	167,038,707 - 167,060,758 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	167,025,823 - 167,060,770 (-)	Ensembl				GRCr8
mRatBN7.2	2	164,740,547 - 164,762,754 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	164,729,749 - 164,762,745 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	171,958,548 - 171,980,851 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	169,974,584 - 169,996,872 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	164,583,426 - 164,605,716 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	178,367,547 - 178,389,641 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	178,367,549 - 178,389,608 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	197,703,002 - 197,725,057 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	171,008,641 - 171,030,692 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	158,837,135 - 158,859,189 (-)	NCBI		Celera
RGSC_v3.1	2	170,958,749 - 170,980,798 (-)	NCBI
Cytogenetic Map	2	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

disease of metabolism (ISO)

genetic disease (ISO)

hypertrophic cardiomyopathy (ISO)

megacolon (ISO)

multiple acyl-CoA dehydrogenase deficiency (ISO)

myopathy (ISO)

obesity (ISO)

spinal muscular atrophy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-trinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (EXP,ISO)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

clofibrate (EXP,ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fenofibrate (EXP,ISO)

finasteride (EXP)

flutamide (EXP)

gentamycin (EXP)

glafenine (EXP)

inulin (ISO)

isotretinoin (ISO)

ivermectin (ISO)

lipopolysaccharide (ISO)

methapyrilene (EXP)

mitoxantrone (ISO)

Muraglitazar (EXP)

N-nitrosomorpholine (EXP)

ochratoxin A (EXP)

okadaic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (EXP,ISO)

Soman (EXP)

streptozocin (ISO)

sulforaphane (ISO)

sulindac (EXP)

sunitinib (ISO)

temozolomide (ISO)

Tesaglitazar (EXP)

tetrachloromethane (EXP)

tetracycline (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

tributylstannane (EXP,ISO)

trichloroethene (EXP)

triptonide (ISO)

troglitazone (EXP)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

electron transport chain (IBA,IEA,ISO)

fatty acid beta-oxidation using acyl-CoA dehydrogenase (ISO)

respiratory electron transport chain (IEA)

response to oxidative stress (ISO,ISS)

Cellular Component

membrane (ISO)

mitochondrial inner membrane (IBA,IEA,ISO)

mitochondrial membrane (IDA,ISO)

mitochondrion (IEA,ISO)

Molecular Function

4 iron, 4 sulfur cluster binding (IEA,ISO)

electron transfer activity (IDA,ISO)

electron-transferring-flavoprotein dehydrogenase activity (IBA,IEA,ISO)

flavin adenine dinucleotide binding (ISO)

iron-sulfur cluster binding (IDA,IEA,ISO)

metal ion binding (IEA)

oxidoreductase activity (IEA,ISO)

protein binding (ISO)

quinone binding (ISO)

ubiquinone binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

fatty acid beta degradation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Acyl-CoA dehydrogenases. A mechanistic overview.	Ghisla S and Thorpe C, Eur J Biochem. 2004 Feb;271(3):494-508.
3.	cDNA cloning, functional expression and cellular localization of rat liver mitochondrial electron-transfer flavoprotein-ubiquinone oxidoreductase protein.	Huang S, etal., Sci China C Life Sci. 2005 Aug;48(4):357-67.
4.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Comprehensive gene review and curation	RGD comprehensive gene curation
11.	Expression of human electron transfer flavoprotein-ubiquinone oxidoreductase from a baculovirus vector: kinetic and spectral characterization of the human protein.	Simkovic M, etal., Biochem J 2002 Jun 15;364(Pt 3):659-67.
12.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:1332770	PMID:1991113	PMID:4052375	PMID:8306995	PMID:9334218	PMID:10423253	PMID:12865426	PMID:14640977	PMID:14651853	PMID:17023274	PMID:17050691	PMID:17412732
PMID:18037314	PMID:18614015	PMID:21428728

Genomics

Comparative Map Data

Etfdh
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	167,038,707 - 167,060,758 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	167,025,823 - 167,060,770 (-)	Ensembl				GRCr8
mRatBN7.2	2	164,740,547 - 164,762,754 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	164,729,749 - 164,762,745 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	171,958,548 - 171,980,851 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	169,974,584 - 169,996,872 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	164,583,426 - 164,605,716 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	178,367,547 - 178,389,641 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	178,367,549 - 178,389,608 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	197,703,002 - 197,725,057 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	171,008,641 - 171,030,692 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	158,837,135 - 158,859,189 (-)	NCBI		Celera
RGSC_v3.1	2	170,958,749 - 170,980,798 (-)	NCBI
Cytogenetic Map	2	q33	NCBI

ETFDH
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	158,672,296 - 158,709,623 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	158,671,968 - 158,710,758 (+)	Ensembl			hg38	GRCh38
GRCh37	4	159,593,448 - 159,630,775 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	159,812,727 - 159,849,292 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	159,951,100 - 159,987,423	NCBI
Celera	4	156,934,316 - 156,970,701 (+)	NCBI		Celera
Cytogenetic Map	4	q32.1	NCBI
HuRef	4	155,343,105 - 155,379,682 (+)	NCBI		HuRef
CHM1_1	4	159,569,735 - 159,606,307 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	162,023,044 - 162,060,372 (+)	NCBI		T2T-CHM13v2.0

Etfdh
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	79,511,095 - 79,536,074 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	79,511,095 - 79,536,807 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	79,603,788 - 79,628,767 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	79,603,788 - 79,629,500 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	79,407,710 - 79,432,689 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	79,689,739 - 79,721,121 (-)	NCBI		MGSCv36	mm8
Celera	3	79,641,935 - 79,666,883 (-)	NCBI		Celera
Cytogenetic Map	3	E3	NCBI
cM Map	3	34.91	NCBI

Etfdh
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955471	12,289,857 - 12,348,167 (+)	Ensembl
ChiLan1.0	NW_004955471	12,282,601 - 12,308,792 (+)	NCBI	ChiLan1.0	ChiLan1.0

ETFDH
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	156,539,264 - 156,578,007 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	156,894,847 - 156,933,256 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	150,992,123 - 151,028,698 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	162,802,917 - 162,838,807 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	162,802,917 - 162,838,807 (+)	Ensembl			panPan2	panpan1.1

ETFDH
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	55,752,170 - 55,781,118 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	55,752,200 - 55,792,105 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	56,114,006 - 56,142,677 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	56,495,410 - 56,525,823 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	56,495,413 - 56,525,811 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	55,734,215 - 55,762,881 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	55,833,373 - 55,862,247 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	56,147,031 - 56,175,699 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Etfdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	34,381,383 - 34,406,369 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936576	5,140,577 - 5,165,527 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936576	5,140,577 - 5,165,527 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ETFDH
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	47,608,772 - 47,657,436 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	47,608,499 - 47,655,889 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	50,013,348 - 50,060,554 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ETFDH
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	105,214,231 - 105,252,100 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	105,213,653 - 105,254,502 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	84,921,905 - 84,959,410 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Etfdh
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624848	3,639,294 - 3,677,517 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624848	3,639,559 - 3,673,771 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Etfdh
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	73,778,467 - 73,801,006 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Etfdh
181 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	299
Count of miRNA genes:	186
Interacting mature miRNAs:	210
Transcripts:	ENSRNOT00000013262
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	199723085	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	145807215	190807215	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	199723085	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	199723085	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	205135267	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	199723085	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	178247591	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	154723085	178247591	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	178247591	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	199723085	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	159440760	195313808	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	178247591	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	178247591	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	178247591	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	147287892	192287892	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149806826	170653323	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	165453811	210453811	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	163253030	208253030	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	145807215	173074435	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat

Markers in Region

RH128555

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	164,740,672 - 164,740,861 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	178,367,666 - 178,367,854	NCBI	Rnor6.0
Rnor_5.0	2	197,703,119 - 197,703,307	UniSTS	Rnor5.0
RGSC_v3.4	2	171,008,755 - 171,008,943	UniSTS	RGSC3.4
Celera	2	158,837,249 - 158,837,437	UniSTS
RH 3.4 Map	2	1060.2	UniSTS
Cytogenetic Map	2	q32	UniSTS

AV001013

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	164,741,620 - 164,741,701 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	178,368,614 - 178,368,694	NCBI	Rnor6.0
Rnor_5.0	2	197,704,067 - 197,704,147	UniSTS	Rnor5.0
RGSC_v3.4	2	171,009,703 - 171,009,783	UniSTS	RGSC3.4
Celera	2	158,838,197 - 158,838,277	UniSTS
Cytogenetic Map	2	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_198742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY365022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HB967846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HD025256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM443072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM443073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013262 ⟹ ENSRNOP00000013262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	167,038,411 - 167,060,770 (-)	Ensembl
mRatBN7.2 Ensembl	2	164,740,245 - 164,762,624 (-)	Ensembl
Rnor_6.0 Ensembl	2	178,367,549 - 178,389,608 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100343 ⟹ ENSRNOP00000082804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	167,031,604 - 167,060,770 (-)	Ensembl
mRatBN7.2 Ensembl	2	164,732,409 - 164,762,624 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104112 ⟹ ENSRNOP00000078068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	167,028,225 - 167,060,770 (-)	Ensembl
mRatBN7.2 Ensembl	2	164,729,749 - 164,762,624 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105634 ⟹ ENSRNOP00000077926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	167,038,411 - 167,060,770 (-)	Ensembl
mRatBN7.2 Ensembl	2	164,740,250 - 164,762,745 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123636 ⟹ ENSRNOP00000101339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	167,025,823 - 167,060,770 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136194 ⟹ ENSRNOP00000106551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	167,028,587 - 167,060,770 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157798 ⟹ ENSRNOP00000105345

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	167,025,877 - 167,060,770 (-)	Ensembl

RefSeq Acc Id:

NM_198742 ⟹ NP_942037

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	167,038,707 - 167,060,758 (-)	NCBI
mRatBN7.2	2	164,740,559 - 164,762,611 (-)	NCBI
Rnor_6.0	2	178,367,552 - 178,389,603 (-)	NCBI
Rnor_5.0	2	197,703,002 - 197,725,057 (-)	NCBI
RGSC_v3.4	2	171,008,641 - 171,030,692 (-)	RGD
Celera	2	158,837,135 - 158,859,189 (-)	RGD

Sequence:

show sequence

GTACGCCGCGAAGCAAGGGCGATCAGCAGATCCCAGAGGCTGACAGAAGCTGAGCAGTAGGGGC
TTCTTGGCAGGTGATGGCGCCCCTCGTGGCCTAGAAGTCCAGCGCCGTCCTCAAGCCACAGACC
CGCCTCTCTCTGTTGTATCTGATCAAGTCTCCGGGTCACTTTGAACATGTTGGTGCGACTAACC
AAGCTGTCCTGCCCTGCATATCAGTGGTTTCATGCCTTAAAAATTAAAAAGTGCCTACCTCTGT
GTGCTCCAAGATGCTCTTCAACCTCTGCTGTACCTCAGATTACCACTCACTACACTATTCATCC
CCGGGAAAAAGACAAAAGATGGGAAGGAGTGAATATGGAGAGATTTGCAGAAGAAGCAGATGTG
GTAATAGTTGGTGCCGGCCCAGCAGGGCTCTCTGCAGCTATTCGGCTAAAGCAGCTGGCTGCTG
AACAGGAAAAGGACATCCGTGTGTGTCTGGTGGAGAAAGCTGCTCAGATAGGAGCTCATACGCT
CTCAGGGGCTTGCCTTGATCCAGCTGCTTTTAAAGAGCTCTTCCCAGACTGGAAGGAGAAGGGG
GCTCCACTTAACACTCCTGTAACAGAAGACAGGTTTGCGATTTTAACAGAGAAACACAGAATTC
CTGTGCCAATTCTTCCAGGTCTTCCGATGAACAATCATGGCAATTACATCGTACGCCTCGGACA
CCTTGTGAGCTGGATGGGAGAACAGGCAGAGGCTCTGGGAGTTGAAGTGTACCCTGGATATGCT
GCTGCTGAGGTCCTTTATCATGAAGATGGTAGTGTGAAAGGAATCGCCACTAACGATGTGGGAA
TACAGAAGGATGGCGCACCAAAGACAACATTTGAGAGAGGCCTGGAGTTGCATGCCAAAGTCAC
AATCTTTGCAGAAGGCTGCCATGGACACCTAGCCAAGCAGCTTTATAAAAAGTTTGATTTGAGG
GCCAGCTGTGATGCCCAGACTTACGGAATTGGTTTGAAGGAGTTATGGGTTATTGATGAGAAGA
AGTGGAAACCTGGGAGAGTAGATCACACTGTTGGCTGGCCCTTGGACAGACATACTTATGGAGG
CTCTTTCCTCTATCACTTAAATGAAGGTGAACCTCTAGTAGCTGTTGGTTTTGTGGTTGGCCTG
GACTATCAGAATCCATACCTGAGTCCATTCAGAGAGTTCCAGAGGTGGAAGCATCACCCCAGCA
TCCGACCAACCCTGGAAGGTGGGAAAAGGATAGCCTATGGAGCCCGAGCTCTCAATGAAGGTGG
CTTGCAGTCCATACCAAAACTCACTTTTCCTGGTGGCTTACTAATTGGTTGCAGTCCTGGATTC
ATGAATGTTCCCAAGATCAAAGGTACCCACACAGCAATGAAAAGTGGAAGCTTGGCAGCAGAAG
CAATTTTTAAGCAACTAACTAGTGAAAATCTCCAATCAAAGACAGCAGGACTCCACGTAACTGA
GTATGAGGACAATTTGAAGCAATCCTGGGTGTGGAAAGAGCTACATGCTGTCAGAAATATAAGG
CCATCCTGCCACGGGATCCTGGGGGTATATGGAGGGATGATTTACACTGGAATATTTTACTGGA
TATTGAGAGGAATGGAGCCATGGACTCTAAAACATAAAGGCTCAGACTCTGAACAGCTCAAACC
AGCCAAGGACTGTACACCCATTGAGTATCCAAAACCTGACGGACAGATCAGTTTTGACCTCTTA
TCCTCTGTGGCTCTGAGTGGTACTAATCATGAACATGACCAGCCAGCACATTTAACCTTGAAGG
ATGACAGCATACCTGTTAATAGAAATCTGTCAATATATGATGGGCCTGAGCAGCGATTCTGCCC
TGCAGGAGTTTATGAATTTGTTCCTCTGGAACAAGGTGATGGATTTCGGTTACAGATAAATGCT
CAGAACTGTGTGCATTGTAAAACATGTGATATCAAAGACCCAAGTCAAAATATTAACTGGGTGG
TCCCAGAAGGTGGAGGAGGACCTGCTTACAATGGCATGTAAAGCCCAAGTGCCTCCACTTACTG
GCACACTTGACAGCCAGTTTCTAGAATACTGTAAATGTATGCCAAACTAACCTCCCATATGTTT
GGATAACTTCTGAACAAGTGTCCTTCAAACACTGAAGTAAAAAACTTTGTATCTAACGTCCCAT
AAAATCATGAAATATTTGTCATTAATAAAACTTTATAAATAAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_006232507 ⟹ XP_006232569

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	167,038,707 - 167,060,692 (-)	NCBI
mRatBN7.2	2	164,740,556 - 164,762,611 (-)	NCBI
Rnor_6.0	2	178,367,549 - 178,389,603 (-)	NCBI
Rnor_5.0	2	197,703,002 - 197,725,057 (-)	NCBI

Sequence:

show sequence

GTACGCCGCGAAGCAAGGGCGATCAGCAGATCCCAGAGGCTGACAGAAGCTGAGCAGTAGGGGC
TTCTTGGCAGGTGATGGCGCCCCTCGTGGCCTAGAAGTCCAGCGCCGTCCTCAAGCCACAGACC
CGCCTCTCTCTGTTGTATCTGATCAAGTCTCCGGGTCACTTTGAACATGTTGGTGCGACTAACC
AAGCTGTCCTGCCCTGCATATCAGTGGTTTCATGCCTTAAAAATTAAAAAGTGCCTACCTCTGT
GTGCTCCAAGATGCTCTTCAACCTCTGCTGTACCTCAGATTACCACTCACTACACTATTCATCC
CCGGGAAAAAGACAAAAGATGGGAAGGAGTGAATATGGAGAGATTTGCAGAAGAAGCAGATGTG
GTAATAGTTGGTGCCGGCCCAGCAGGGCTCTCTGCAGCTATTCGGCTAAAGCAGCTGGCTGCTG
AACAGGAAAAGGACATCCGTGTGTGTCTGGTGGAGAAAGCTGCTCAGATAGGAGCTCATACGCT
CTCAGGGGCTTGCCTTGATCCAGCTGCTTTTAAAGAGCTCTTCCCAGACTGGAAGGAGAAGGGG
GCTCCACTTAACACTCCTGTAACAGAAGACAGGTTTGCGATTTTAACAGAGAAACACAGAATTC
CTGTGCCAATTCTTCCAGGTCTTCCGATGAACAATCATGGCAATTACATCGTACGCCTCGGACA
CCTTGTGAGCTGGATGGGAGAACAGGCAGAGGCTCTGGGAGTTGAAGTGTACCCTGGATATGCT
GCTGCTGAGGTCCTTTATCATGAAGATGGTAGTGTGAAAGGAATCGCCACTAACGATGTGGGAA
TACAGAAGGATGGCGCACCAAAGTTATGGGTTATTGATGAGAAGAAGTGGAAACCTGGGAGAGT
AGATCACACTGTTGGCTGGCCCTTGGACAGACATACTTATGGAGGCTCTTTCCTCTATCACTTA
AATGAAGGTGAACCTCTAGTAGCTGTTGGTTTTGTGGTTGGCCTGGACTATCAGAATCCATACC
TGAGTCCATTCAGAGAGTTCCAGAGGTGGAAGCATCACCCCAGCATCCGACCAACCCTGGAAGG
TGGGAAAAGGATAGCCTATGGAGCCCGAGCTCTCAATGAAGGTGGCTTGCAGTCCATACCAAAA
CTCACTTTTCCTGGTGGCTTACTAATTGGTTGCAGTCCTGGATTCATGAATGTTCCCAAGATCA
AAGGTACCCACACAGCAATGAAAAGTGGAAGCTTGGCAGCAGAAGCAATTTTTAAGCAACTAAC
TAGTGAAAATCTCCAATCAAAGACAGCAGGACTCCACGTAACTGAGTATGAGGACAATTTGAAG
CAATCCTGGGTGTGGAAAGAGCTACATGCTGTCAGAAATATAAGGCCATCCTGCCACGGGATCC
TGGGGGTATATGGAGGGATGATTTACACTGGAATATTTTACTGGATATTGAGAGGAATGGAGCC
ATGGACTCTAAAACATAAAGGCTCAGACTCTGAACAGCTCAAACCAGCCAAGGACTGTACACCC
ATTGAGTATCCAAAACCTGACGGACAGATCAGTTTTGACCTCTTATCCTCTGTGGCTCTGAGTG
GTACTAATCATGAACATGACCAGCCAGCACATTTAACCTTGAAGGATGACAGCATACCTGTTAA
TAGAAATCTGTCAATATATGATGGGCCTGAGCAGCGATTCTGCCCTGCAGGAGTTTATGAATTT
GTTCCTCTGGAACAAGGTGATGGATTTCGGTTACAGATAAATGCTCAGAACTGTGTGCATTGTA
AAACATGTGATATCAAAGACCCAAGTCAAAATATTAACTGGGTGGTCCCAGAAGGTGGAGGAGG
ACCTGCTTACAATGGCATGTAAAGCCCAAGTGCCTCCACTTACTGGCACACTTGACAGCCAGTT
TCTAGAATACTGTAAATGTATGCCAAACTAACCTCCCATATGTTTGGATAACTTCTGAACAAGT
GTCCTTCAAACACTGAAGTAAAAAACTTTGTATCTAACGTCCCATAAAATCATGAAATATTTGT
CATTAATAAAACTTTATAAATAAATAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_942037	(Get FASTA)	NCBI Sequence Viewer
	XP_006232569	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81890	(Get FASTA)	NCBI Sequence Viewer
	AAQ67364	(Get FASTA)	NCBI Sequence Viewer
	AEA41109	(Get FASTA)	NCBI Sequence Viewer
	AEA41110	(Get FASTA)	NCBI Sequence Viewer
	CBG18554	(Get FASTA)	NCBI Sequence Viewer
	CBV31909	(Get FASTA)	NCBI Sequence Viewer
	EDM00867	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013262
	ENSRNOP00000077926
GenBank Protein	Q6UPE1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_942037 ⟸ NM_198742
- Peptide Label:	precursor
- UniProtKB:	Q6UPE1 (UniProtKB/Swiss-Prot), Q66HF3 (UniProtKB/TrEMBL), F2W8A8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVRLTKLSCPAYQWFHALKIKKCLPLCAPRCSSTSAVPQITTHYTIHPREKDKRWEGVNMERF AEEADVVIVGAGPAGLSAAIRLKQLAAEQEKDIRVCLVEKAAQIGAHTLSGACLDPAAFKELFP DWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVE VYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY KKFDLRASCDAQTYGIGLKELWVIDEKKWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVAV GFVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGLQSIPKLTFPGGLLI GCSPGFMNVPKIKGTHTAMKSGSLAAEAIFKQLTSENLQSKTAGLHVTEYEDNLKQSWVWKELH AVRNIRPSCHGILGVYGGMIYTGIFYWILRGMEPWTLKHKGSDSEQLKPAKDCTPIEYPKPDGQ ISFDLLSSVALSGTNHEHDQPAHLTLKDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGF RLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM hide sequence

RefSeq Acc Id:	XP_006232569 ⟸ XM_006232507
- Peptide Label:	isoform X1
- UniProtKB:	Q6UPE1 (UniProtKB/Swiss-Prot), F7ELJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVRLTKLSCPAYQWFHALKIKKCLPLCAPRCSSTSAVPQITTHYTIHPREKDKRWEGVNMERF AEEADVVIVGAGPAGLSAAIRLKQLAAEQEKDIRVCLVEKAAQIGAHTLSGACLDPAAFKELFP DWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVE VYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPKLWVIDEKKWKPGRVDHTVGWPLDRHTYGG SFLYHLNEGEPLVAVGFVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGG LQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGSLAAEAIFKQLTSENLQSKTAGLHVTE YEDNLKQSWVWKELHAVRNIRPSCHGILGVYGGMIYTGIFYWILRGMEPWTLKHKGSDSEQLKP AKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLKDDSIPVNRNLSIYDGPEQRFCP AGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM hide sequence

Ensembl Acc Id:

ENSRNOP00000013262 ⟸ ENSRNOT00000013262

Ensembl Acc Id:

ENSRNOP00000077926 ⟸ ENSRNOT00000105634

Ensembl Acc Id:

ENSRNOP00000078068 ⟸ ENSRNOT00000104112

Ensembl Acc Id:

ENSRNOP00000082804 ⟸ ENSRNOT00000100343

Ensembl Acc Id:

ENSRNOP00000101339 ⟸ ENSRNOT00000123636

Ensembl Acc Id:

ENSRNOP00000105345 ⟸ ENSRNOT00000157798

Ensembl Acc Id:

ENSRNOP00000106551 ⟸ ENSRNOT00000136194

Protein Domains

4Fe-4S ferredoxin-type ETF-QO/FixC ubiquinone-binding ETF-QO/FixX C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6UPE1-F1-model_v2	AlphaFold	Q6UPE1	1-616	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691386

Promoter ID:

EPDNEW_R1910

Type:

initiation region

Name:

Etfdh_1

Description:

electron transfer flavoprotein dehydrogenase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	178,389,576 - 178,389,636	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735052	AgrOrtholog
BioCyc Gene	G2FUF-52727	BioCyc
Ensembl Genes	ENSRNOG00000009538	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000013262	ENTREZGENE
	ENSRNOT00000105634	ENTREZGENE
Gene3D-CATH	3.30.70.20	UniProtKB/Swiss-Prot
	3.30.9.90	UniProtKB/Swiss-Prot
	3.50.50.60	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7109511	IMAGE-MGC_LOAD
InterPro	4Fe4S_Fe-S-bd	UniProtKB/Swiss-Prot
	ETF-QO	UniProtKB/Swiss-Prot
	ETF-QO/FixC_UQ-bd	UniProtKB/Swiss-Prot
	ETF-QO/FixX_C	UniProtKB/Swiss-Prot
	FAD/NAD-bd_sf	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93785	IMAGE-MGC_LOAD
NCBI Gene	295143	ENTREZGENE
PANTHER	ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE, MITOCHONDRIAL	UniProtKB/Swiss-Prot
	PTHR10617	UniProtKB/Swiss-Prot
Pfam	ETF_QO	UniProtKB/Swiss-Prot
	ETFQO_UQ-bd	UniProtKB/Swiss-Prot
	Thi4	UniProtKB/Swiss-Prot
PhenoGen	Etfdh	PhenoGen
PRINTS	PNDRDTASEII	UniProtKB/Swiss-Prot
PROSITE	4FE4S_FER_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000009538	RatGTEx
Superfamily-SCOP	4Fe-4S ferredoxins	UniProtKB/Swiss-Prot
	FAD-linked reductases, C-terminal domain	UniProtKB/Swiss-Prot
	SSF51905	UniProtKB/Swiss-Prot
UniProt	A0A8I5Y9W6_RAT	UniProtKB/TrEMBL
	A0A8I5ZXZ1_RAT	UniProtKB/TrEMBL
	A0ABK0LIL7_RAT	UniProtKB/TrEMBL
	A0ABK0LKJ7_RAT	UniProtKB/TrEMBL
	A0ABK0LLP0_RAT	UniProtKB/TrEMBL
	ETFD_RAT	UniProtKB/Swiss-Prot
	F2W8A8	ENTREZGENE, UniProtKB/TrEMBL
	F7ELJ5	ENTREZGENE, UniProtKB/TrEMBL
	Q66HF3	ENTREZGENE, UniProtKB/TrEMBL
	Q6UPE1	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-13	Etfdh	electron transfer flavoprotein dehydrogenase	Etfdh	electron-transferring-flavoprotein dehydrogenase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Etfdh	electron-transferring-flavoprotein dehydrogenase			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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