Cmtm8 (CKLF-like MARVEL transmembrane domain containing 8) - Rat Genome Database

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Gene: Cmtm8 (CKLF-like MARVEL transmembrane domain containing 8) Rattus norvegicus
Analyze
Symbol: Cmtm8
Name: CKLF-like MARVEL transmembrane domain containing 8
RGD ID: 735040
Description: Predicted to be a structural constituent of myelin sheath. Predicted to be involved in myelination. Predicted to be located in nucleoplasm. Predicted to be active in membrane. Orthologous to human CMTM8 (CKLF like MARVEL transmembrane domain containing 8); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: chemokine-like factor super family 8; chemokine-like related protein 8; CKLF-like MARVEL transmembrane domain-containing protein 8; Cklfsf8; MGC108531
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,360,168 - 123,425,291 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8123,360,170 - 123,425,276 (-)EnsemblGRCr8
mRatBN7.28114,481,730 - 114,547,107 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,481,982 - 114,547,083 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8120,099,270 - 120,155,219 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,298,506 - 118,354,459 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,141,356 - 116,197,314 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,848,249 - 122,913,597 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,848,501 - 122,904,913 (-)Ensemblrn6Rnor6.0
Rnor_5.08122,160,334 - 122,226,662 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48119,209,101 - 119,265,441 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,728,864 - 113,785,306 (-)NCBICelera
RGSC_v3.18119,228,839 - 119,285,178 (-)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
myelination  (IBA)

Cellular Component
membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Identification of eight genes encoding chemokine-like factor superfamily members 1-8 (CKLFSF1-8) by in silico cloning and experimental validation. Han W, etal., Genomics 2003 Jun;81(6):609-17.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Cmtm8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,360,168 - 123,425,291 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8123,360,170 - 123,425,276 (-)EnsemblGRCr8
mRatBN7.28114,481,730 - 114,547,107 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,481,982 - 114,547,083 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8120,099,270 - 120,155,219 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,298,506 - 118,354,459 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,141,356 - 116,197,314 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,848,249 - 122,913,597 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,848,501 - 122,904,913 (-)Ensemblrn6Rnor6.0
Rnor_5.08122,160,334 - 122,226,662 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48119,209,101 - 119,265,441 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,728,864 - 113,785,306 (-)NCBICelera
RGSC_v3.18119,228,839 - 119,285,178 (-)NCBI
Cytogenetic Map8q32NCBI
CMTM8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,238,192 - 32,370,321 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,237,207 - 32,370,699 (+)Ensemblhg38GRCh38
GRCh37332,280,172 - 32,411,813 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,255,175 - 32,386,817 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34332,255,174 - 32,386,815NCBI
Celera332,217,566 - 32,349,242 (+)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,215,225 - 32,347,344 (+)NCBIHuRef
CHM1_1332,230,141 - 32,361,784 (+)NCBICHM1_1
T2T-CHM13v2.0332,233,757 - 32,367,445 (+)NCBIT2T-CHM13v2.0
Cmtm8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,618,411 - 114,673,220 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,618,413 - 114,673,224 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389114,789,343 - 114,844,152 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,789,345 - 114,844,156 (-)Ensemblmm10GRCm38
MGSCv379114,698,463 - 114,753,270 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369114,638,043 - 114,692,850 (-)NCBIMGSCv36mm8
Celera9115,265,153 - 115,321,558 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map965.2NCBI
Cmtm8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543023,638,734 - 23,728,365 (+)Ensembl
ChiLan1.0NW_00495543023,638,734 - 23,728,365 (+)NCBIChiLan1.0ChiLan1.0
CMTM8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,212,966 - 32,347,275 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,217,730 - 32,352,042 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,153,673 - 32,287,746 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1332,472,720 - 32,602,124 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl332,472,794 - 32,601,767 (+)EnsemblpanPan2panpan1.1
CMTM8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,398,693 - 12,508,158 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,399,022 - 12,508,177 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2312,373,367 - 12,483,102 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02312,689,773 - 12,799,411 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,689,781 - 12,800,253 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12312,490,945 - 12,600,454 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,633,389 - 12,743,169 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,645,781 - 12,755,553 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cmtm8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,636,929 - 189,736,092 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647322,775,502 - 22,875,023 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647322,775,503 - 22,874,665 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMTM8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,243,471 - 18,350,091 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11318,243,379 - 18,350,386 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,414,847 - 20,549,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CMTM8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11576,748,254 - 76,873,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1576,748,220 - 76,874,262 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604150,102,098 - 50,227,956 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmtm8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,333,342 - 10,417,228 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478810,333,314 - 10,417,228 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cmtm8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18105,401,339 - 105,456,367 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cmtm8
596 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:212
Count of miRNA genes:149
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000015188
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8122879213126360737Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
RH128745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,482,021 - 114,482,241 (+)MAPPERmRatBN7.2
Rnor_6.08122,848,541 - 122,848,760NCBIRnor6.0
Rnor_5.08122,160,626 - 122,160,845UniSTSRnor5.0
RGSC_v3.48119,209,143 - 119,209,362UniSTSRGSC3.4
Celera8113,728,906 - 113,729,125UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 159 91 90 59 85 59 6 349 185 11 138 81 92 31 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000015188   ⟹   ENSRNOP00000015188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8123,360,170 - 123,416,584 (-)Ensembl
mRatBN7.2 Ensembl8114,481,982 - 114,538,402 (-)Ensembl
Rnor_6.0 Ensembl8122,848,501 - 122,904,913 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094177   ⟹   ENSRNOP00000092358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,487,780 - 114,538,402 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101305   ⟹   ENSRNOP00000077565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8123,360,170 - 123,425,276 (-)Ensembl
mRatBN7.2 Ensembl8114,481,982 - 114,547,083 (-)Ensembl
RefSeq Acc Id: NM_198754   ⟹   NP_942049
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,360,168 - 123,416,584 (-)NCBI
mRatBN7.28114,481,980 - 114,538,402 (-)NCBI
Rnor_6.08122,848,499 - 122,904,913 (-)NCBI
Rnor_5.08122,160,334 - 122,226,662 (-)NCBI
RGSC_v3.48119,209,101 - 119,265,441 (-)RGD
Celera8113,728,864 - 113,785,306 (-)RGD
Sequence:
RefSeq Acc Id: XM_006243964   ⟹   XP_006244026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,360,168 - 123,425,284 (-)NCBI
mRatBN7.28114,481,730 - 114,547,107 (-)NCBI
Rnor_6.08122,848,249 - 122,913,597 (-)NCBI
Rnor_5.08122,160,334 - 122,226,662 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063265300   ⟹   XP_063121370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,360,168 - 123,419,253 (-)NCBI
RefSeq Acc Id: XM_063265301   ⟹   XP_063121371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,360,168 - 123,425,291 (-)NCBI
RefSeq Acc Id: XM_063265302   ⟹   XP_063121372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,360,168 - 123,415,949 (-)NCBI
RefSeq Acc Id: NP_942049   ⟸   NM_198754
- UniProtKB: Q71B06 (UniProtKB/TrEMBL),   F7F866 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244026   ⟸   XM_006243964
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y7X1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015188   ⟸   ENSRNOT00000015188
Ensembl Acc Id: ENSRNOP00000077565   ⟸   ENSRNOT00000101305
Ensembl Acc Id: ENSRNOP00000092358   ⟸   ENSRNOT00000094177
RefSeq Acc Id: XP_063121371   ⟸   XM_063265301
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063121370   ⟸   XM_063265300
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121372   ⟸   XM_063265302
- Peptide Label: isoform X4
Protein Domains
MARVEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q71B06-F1-model_v2 AlphaFold Q71B06 1-173 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735040 AgrOrtholog
BioCyc Gene G2FUF-28910 BioCyc
Ensembl Genes ENSRNOG00000011201 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015188 ENTREZGENE
  ENSRNOT00000015188.6 UniProtKB/TrEMBL
  ENSRNOT00000101305 ENTREZGENE
  ENSRNOT00000101305.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7325894 IMAGE-MGC_LOAD
InterPro MAL UniProtKB/TrEMBL
  Marvel UniProtKB/TrEMBL
  MARVEL-CKLF_proteins UniProtKB/TrEMBL
KEGG Report rno:301045 UniProtKB/TrEMBL
MGC_CLONE MGC:108531 IMAGE-MGC_LOAD
NCBI Gene 301045 ENTREZGENE
PANTHER CKLF-LIKE MARVEL TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 8 UniProtKB/TrEMBL
  MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/TrEMBL
PhenoGen Cmtm8 PhenoGen
PRINTS MALPROTEIN UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011201 RatGTEx
UniProt A0A8I5Y7X1 ENTREZGENE, UniProtKB/TrEMBL
  A6I3Q0_RAT UniProtKB/TrEMBL
  F7F866 ENTREZGENE, UniProtKB/TrEMBL
  Q71B06 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Cmtm8  CKLF-like MARVEL transmembrane domain containing 8  Cklfsf8  chemokine-like factor super family 8  Symbol and Name updated 1299863 APPROVED
2004-09-10 Cklfsf8  chemokine-like factor super family 8      Symbol and Name status set to approved 1299863 APPROVED