Scin (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 6 | 62,836,641 - 62,915,287 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 6 | 62,836,641 - 62,915,287 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 6 | 57,109,500 - 57,188,123 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 6 | 57,109,403 - 57,188,242 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 6 | 57,380,003 - 57,480,452 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 6 | 57,694,940 - 57,795,392 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 6 | 57,179,603 - 57,270,868 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 6 | 59,975,375 - 60,055,075 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 6 | 59,976,003 - 60,054,279 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 6 | 69,564,441 - 69,641,704 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 6 | 59,237,930 - 59,357,001 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 6 | 56,160,567 - 56,251,246 (-) | NCBI | | Celera | | | RGSC_v3.1 | 6 | 59,241,055 - 59,360,127 (-) | NCBI | | | | | Cytogenetic Map | 6 | q21 | NCBI | | | | |
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SCIN (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 7 | 12,570,720 - 12,660,182 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 7 | 12,570,577 - 12,660,182 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 7 | 12,610,346 - 12,699,807 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 7 | 12,595,673 - 12,659,752 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 7 | 12,402,387 - 12,466,467 | NCBI | | | | | Celera | 7 | 12,587,891 - 12,670,905 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | p21.3 | NCBI | | | | | HuRef | 7 | 12,488,818 - 12,571,812 (+) | NCBI | | HuRef | | | CHM1_1 | 7 | 12,610,380 - 12,693,312 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 7 | 12,701,807 - 12,791,257 (+) | NCBI | | T2T-CHM13v2.0 | | | CRA_TCAGchr7v2 | 7 | 12,661,354 - 12,744,363 (+) | NCBI | | | | |
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Scin (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 12 | 40,109,768 - 40,184,227 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 12 | 40,109,768 - 40,184,227 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 12 | 40,059,769 - 40,134,228 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 12 | 40,059,769 - 40,134,228 (-) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 12 | 40,786,356 - 40,860,815 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 12 | 40,570,192 - 40,644,606 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 12 | 41,488,078 - 41,562,781 (-) | NCBI | | Celera | | | Cytogenetic Map | 12 | B1 | NCBI | | | | | cM Map | 12 | 18.06 | NCBI | | | | |
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Scin (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955410 | 16,285,217 - 16,358,280 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955410 | 16,286,131 - 16,358,286 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SCIN (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 6 | 17,441,949 - 17,526,634 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 7 | 65,766,665 - 65,851,350 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 7 | 13,269,361 - 13,351,854 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 7 | 12,613,996 - 12,696,244 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 7 | 12,613,996 - 12,696,244 (+) | Ensembl | | | panPan2 | panpan1.1 |
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SCIN (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 14 | 27,429,476 - 27,477,805 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 14 | 27,412,351 - 27,477,283 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 14 | 26,912,136 - 26,989,694 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 14 | 27,226,368 - 27,303,850 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 14 | 27,226,395 - 27,306,606 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 14 | 27,396,521 - 27,473,978 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 14 | 27,127,055 - 27,204,635 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 14 | 27,495,113 - 27,521,348 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | | UU_Cfam_GSD_1.0 | 14 | 27,385,153 - 27,462,823 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Scin (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SCIN (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 9 | 82,103,087 - 82,185,283 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 9 | 82,103,271 - 82,185,254 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 9 | 90,266,490 - 90,348,474 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SCIN (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 21 | 45,453,034 - 45,537,733 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 21 | 45,452,659 - 45,537,323 (-) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666042 | 58,931,149 - 59,016,257 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Scin (Heterocephalus glaber - naked mole-rat) |
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Scin (Rattus rattus - black rat) |
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