Or2y13 (olfactory receptor family 2 subfamily Y member 13) - Rat Genome Database

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Gene: Or2y13 (olfactory receptor family 2 subfamily Y member 13) Rattus norvegicus
Analyze
Symbol: Or2y13
Name: olfactory receptor family 2 subfamily Y member 13
RGD ID: 735025
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including OR2Y1 (olfactory receptor family 2 subfamily Y member 1); INTERACTS WITH ammonium chloride; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: odorant receptor; olfactory receptor 1398; olfactory receptor Olr1398; Olr1398; putative olfactory receptor tpcr07; tpcr07
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81034,289,946 - 34,290,881 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1034,248,453 - 34,290,887 (+)EnsemblGRCr8
mRatBN7.21033,788,832 - 33,789,767 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,784,923 - 33,791,043 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1038,460,506 - 38,461,441 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,998,902 - 6,999,837 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01033,454,169 - 33,455,104 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,744,059 - 34,744,994 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,744,059 - 34,744,994 (+)Ensemblrn6Rnor6.0
Rnor_5.01034,517,214 - 34,518,149 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41034,940,774 - 34,941,709 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1033,153,381 - 33,154,316 (+)NCBICelera
RGSC_v3.11034,941,822 - 34,942,758 (+)NCBI
Cytogenetic Map10q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Specific repertoire of olfactory receptor genes in the male germ cells of several mammalian species. Vanderhaeghen P, etal., Genomics 1997 Feb 1;39(3):239-46.
Additional References at PubMed
PMID:11014824  


Genomics

Comparative Map Data
Or2y13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81034,289,946 - 34,290,881 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1034,248,453 - 34,290,887 (+)EnsemblGRCr8
mRatBN7.21033,788,832 - 33,789,767 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,784,923 - 33,791,043 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1038,460,506 - 38,461,441 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,998,902 - 6,999,837 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01033,454,169 - 33,455,104 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,744,059 - 34,744,994 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,744,059 - 34,744,994 (+)Ensemblrn6Rnor6.0
Rnor_5.01034,517,214 - 34,518,149 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41034,940,774 - 34,941,709 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1033,153,381 - 33,154,316 (+)NCBICelera
RGSC_v3.11034,941,822 - 34,942,758 (+)NCBI
Cytogenetic Map10q21NCBI
OR2G6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,508,073 - 248,527,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,508,073 - 248,527,337 (+)Ensemblhg38GRCh38
GRCh371248,671,374 - 248,690,638 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,751,571 - 246,752,521 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1221,970,901 - 221,971,851 (-)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1219,077,328 - 219,078,278 (-)NCBIHuRef
CHM1_11249,957,250 - 249,958,200 (+)NCBICHM1_1
T2T-CHM13v2.01247,952,793 - 247,960,198 (+)NCBIT2T-CHM13v2.0
Or2y13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,414,552 - 49,415,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,410,475 - 49,418,026 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381149,523,725 - 49,524,660 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,519,648 - 49,527,199 (+)Ensemblmm10GRCm38
MGSCv371149,337,227 - 49,338,162 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361149,367,148 - 49,368,083 (+)NCBIMGSCv36mm8
Celera1154,084,561 - 54,085,496 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.59NCBI
LOC100971558
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21466,490 - 468,559 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,047 - 739,116 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,221,365 - 224,223,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11229,695,783 - 229,696,733 (-)NCBIPanPan1.1PanPan1.1panPan2
OR2G6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,848,252 - 2,857,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl142,848,255 - 2,849,178 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha142,504,776 - 2,505,723 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0142,577,111 - 2,578,058 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1142,732,505 - 2,733,452 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0142,526,685 - 2,527,632 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0142,672,156 - 2,673,103 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101975191
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721389,622,247 - 89,623,222 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936878305,621 - 306,807 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936878305,840 - 306,959 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103230978
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12585,427,325 - 85,428,948 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2585,427,591 - 85,428,529 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236683733,392 - 5,112 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or2y13
11 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:8
Count of miRNA genes:8
Interacting mature miRNAs:8
Transcripts:ENSRNOT00000041540
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103179628176796281Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)102744378772443787Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)101993920764939207Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)101803578263035782Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101866841963668419Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102183375861843633Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102895035373950353Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102980091064653589Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102744378772443787Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102293137391127454Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)102466212373695339Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102702353561843633Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)102980091091417879Rat
2298495Eae23Experimental allergic encephalomyelitis QTL 2316.93nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)101617552561175525Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)102011061465110614Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
2289985Bp305Blood pressure QTL 305arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102907697874076978Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101803578263035782Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)102744378772443787Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102937704652699134Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103112911376129113Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)102011061465110614Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat


Expression

RNA-SEQ Expression

endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
renal system
reproductive system
1 1 1 1 1 4 2 1 18

Sequence


Ensembl Acc Id: ENSRNOT00000041540   ⟹   ENSRNOP00000044744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,784,923 - 33,791,043 (+)Ensembl
Rnor_6.0 Ensembl1034,744,059 - 34,744,994 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133630   ⟹   ENSRNOP00000112313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1034,248,453 - 34,290,887 (+)Ensembl
RefSeq Acc Id: NM_001000002   ⟹   NP_001000002
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81034,289,946 - 34,290,881 (+)NCBI
mRatBN7.21033,788,832 - 33,789,767 (+)NCBI
Rnor_6.01034,744,059 - 34,744,994 (+)NCBI
Rnor_5.01034,517,214 - 34,518,149 (+)NCBI
RGSC_v3.41034,940,774 - 34,941,709 (+)RGD
Celera1033,153,381 - 33,154,316 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000002 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG21319 (Get FASTA)   NCBI Sequence Viewer  
  CAA61844 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000112313
  ENSRNOP00000112313.1
RefSeq Acc Id: NP_001000002   ⟸   NM_001000002
- UniProtKB: F1MAI1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000044744   ⟸   ENSRNOT00000041540
Ensembl Acc Id: ENSRNOP00000112313   ⟸   ENSRNOT00000133630

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAI1-F1-model_v2 AlphaFold F1MAI1 1-311 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735025 AgrOrtholog
BioCyc Gene G2FUF-25286 BioCyc
Ensembl Genes ENSRNOG00000045940 Ensembl
  ENSRNOG00000066975 Ensembl
  ENSRNOG00000074767 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000133630 ENTREZGENE
  ENSRNOT00000133630.1 UniProtKB/TrEMBL
NCBI Gene 287245 ENTREZGENE
PhenoGen Or2y13 PhenoGen
RatGTEx ENSRNOG00000045940 RatGTEx
  ENSRNOG00000066975 RatGTEx
  ENSRNOG00000074767 RatGTEx
UniProt A0ABK0LMX3_RAT UniProtKB/TrEMBL
  F1MAI1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or2y13  olfactory receptor family 2 subfamily Y member 13  Olr1398  olfactory receptor 1398  Symbol and Name Changed 1299863 APPROVED
2005-01-19 Olr1398  olfactory receptor 1398  tpcr07  putative olfactory receptor tpcr07  Symbol and Name updated 1299863 APPROVED