Eif5b (eukaryotic translation initiation factor 5B) - Rat Genome Database

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Gene: Eif5b (eukaryotic translation initiation factor 5B) Rattus norvegicus
Analyze
Symbol: Eif5b
Name: eukaryotic translation initiation factor 5B
RGD ID: 735017
Description: Predicted to enable GTP binding activity; GTPase activity; and nucleic acid binding activity. Predicted to be involved in regulation of translational initiation; ribosome assembly; and translational initiation. Predicted to be active in cytoplasm and synapse. Orthologous to human EIF5B (eukaryotic translation initiation factor 5B); PARTICIPATES IN translation initiation pathway; RNA transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: annexin V-binding protein ABP-7; eIF-5B; LOC308306; translation initiation factor IF-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Eif5b-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,718,706 - 47,773,289 (+)NCBIGRCr8
mRatBN7.2940,222,769 - 40,277,482 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl940,222,898 - 40,277,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,718,560 - 48,773,198 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,841,325 - 53,895,960 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,123,621 - 52,178,205 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,658,724 - 44,713,518 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,681,494 - 44,713,199 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,354,546 - 44,409,587 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,937,415 - 36,993,650 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,963,310 - 36,966,045 (+)NCBI
Celera937,976,326 - 38,029,828 (+)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
apigenin  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dextran sulfate  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
flutamide  (EXP)
FR900359  (ISO)
glyphosate  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hexadecanoic acid  (ISO)
ivermectin  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
perfluorooctanoic acid  (ISO)
piroxicam  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulindac  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
nucleus  (ISO)
synapse  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The scanning mechanism of eukaryotic translation initiation. Hinnebusch AG Annu Rev Biochem. 2014;83:779-812. doi: 10.1146/annurev-biochem-060713-035802. Epub 2014 Jan 29.
4. Molecular cloning and characterization of annexin V-binding proteins with highly hydrophilic peptide structure. Ohsawa K, etal., J Neurochem 1996 Jul;67(1):89-97.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10432305   PMID:12426392   PMID:12477932   PMID:22658674   PMID:22681889   PMID:31505169   PMID:35352799  


Genomics

Comparative Map Data
Eif5b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,718,706 - 47,773,289 (+)NCBIGRCr8
mRatBN7.2940,222,769 - 40,277,482 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl940,222,898 - 40,277,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,718,560 - 48,773,198 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,841,325 - 53,895,960 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,123,621 - 52,178,205 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,658,724 - 44,713,518 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,681,494 - 44,713,199 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,354,546 - 44,409,587 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,937,415 - 36,993,650 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,963,310 - 36,966,045 (+)NCBI
Celera937,976,326 - 38,029,828 (+)NCBICelera
Cytogenetic Map9q21NCBI
EIF5B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38299,337,389 - 99,401,326 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl299,337,389 - 99,401,326 (+)EnsemblGRCh38hg38GRCh38
GRCh37299,953,852 - 100,017,789 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36299,320,266 - 99,383,160 (+)NCBINCBI36Build 36hg18NCBI36
Build 34299,412,394 - 99,474,760NCBI
Celera294,158,503 - 94,221,412 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,719,194 - 93,782,572 (+)NCBIHuRef
CHM1_1299,958,605 - 100,021,494 (+)NCBICHM1_1
T2T-CHM13v2.0299,796,021 - 99,859,976 (+)NCBIT2T-CHM13v2.0
Eif5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39138,037,091 - 38,094,660 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl138,037,091 - 38,094,660 (+)EnsemblGRCm39 Ensembl
GRCm38137,998,010 - 38,055,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,998,010 - 38,055,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv37138,054,855 - 38,112,424 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,942,556 - 38,000,125 (+)NCBIMGSCv36mm8
Celera137,775,604 - 37,832,998 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map116.4NCBI
Eif5b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,622,128 - 5,676,533 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,622,128 - 5,676,533 (+)NCBIChiLan1.0ChiLan1.0
EIF5B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,031,310 - 29,093,502 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,034,070 - 29,096,197 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A99,898,341 - 99,960,829 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A100,266,800 - 100,328,837 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A100,289,562 - 100,328,470 (+)Ensemblpanpan1.1panPan2
EIF5B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,247,536 - 43,342,754 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,244,704 - 43,342,575 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,171,425 - 43,266,587 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,117,126 - 44,212,388 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,118,093 - 44,212,219 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11043,830,346 - 43,925,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,112,733 - 44,207,859 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,295,141 - 44,390,392 (-)NCBIUU_Cfam_GSD_1.0
Eif5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629285,116,933 - 85,170,825 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366611,394,738 - 1,452,640 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366611,398,526 - 1,452,530 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF5B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl354,861,758 - 54,905,810 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1354,861,759 - 54,930,826 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2357,499,007 - 57,566,154 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EIF5B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1143,066,147 - 3,128,498 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl143,066,150 - 3,127,861 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,666,757 - 170,729,411 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif5b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,297,667 - 4,373,918 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,297,832 - 4,373,918 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eif5b
230 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:167
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000035785
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat

Markers in Region
RH142776  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2940,272,947 - 40,273,053 (+)MAPPERmRatBN7.2
Rnor_6.0944,708,984 - 44,709,089NCBIRnor6.0
Rnor_5.0944,405,053 - 44,405,158UniSTSRnor5.0
RGSC_v3.4936,989,116 - 36,989,221UniSTSRGSC3.4
Celera938,025,294 - 38,025,399UniSTS
RH 3.4 Map9379.1UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map9q21UniSTS
RH129308  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1934,813,948 - 34,814,132UniSTS
Celera938,029,562 - 38,029,746UniSTS
Cytogenetic Map9q21UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 43 33 16 33 2 66 28 41 8
Low 9 14 8 3 8 8 9 8 7 3 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000035785   ⟹   ENSRNOP00000036844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl940,245,287 - 40,277,482 (+)Ensembl
Rnor_6.0 Ensembl944,681,494 - 44,713,199 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111626   ⟹   ENSRNOP00000079038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl940,244,896 - 40,277,482 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114110   ⟹   ENSRNOP00000079088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl940,222,898 - 40,277,482 (+)Ensembl
RefSeq Acc Id: NM_001110141   ⟹   NP_001103611
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,718,706 - 47,773,289 (+)NCBI
mRatBN7.2940,222,898 - 40,277,482 (+)NCBI
Rnor_6.0944,658,724 - 44,713,518 (+)NCBI
Rnor_5.0944,354,546 - 44,409,587 (+)NCBI
RGSC_v3.4936,937,415 - 36,993,650 (+)RGD
Celera937,976,326 - 38,029,828 (+)RGD
Sequence:
RefSeq Acc Id: NP_001103611   ⟸   NM_001110141
- UniProtKB: A0JN31 (UniProtKB/Swiss-Prot),   P70488 (UniProtKB/Swiss-Prot),   B2GUV7 (UniProtKB/Swiss-Prot),   A0A8I5ZM99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000036844   ⟸   ENSRNOT00000035785
RefSeq Acc Id: ENSRNOP00000079038   ⟸   ENSRNOT00000111626
RefSeq Acc Id: ENSRNOP00000079088   ⟸   ENSRNOT00000114110
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2GUV7-F1-model_v2 AlphaFold B2GUV7 1-1216 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735017 AgrOrtholog
BioCyc Gene G2FUF-27772 BioCyc
Ensembl Genes ENSRNOG00000023356 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00065027451 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000035785.6 UniProtKB/TrEMBL
  ENSRNOT00000111626.1 UniProtKB/TrEMBL
  ENSRNOT00000114110 ENTREZGENE
  ENSRNOT00000114110.1 UniProtKB/Swiss-Prot
  ENSRNOT00065047461 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.10050 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation factors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7097275 IMAGE-MGC_LOAD
  IMAGE:7323915 IMAGE-MGC_LOAD
  IMAGE:7445700 IMAGE-MGC_LOAD
  IMAGE:9088271 IMAGE-MGC_LOAD
InterPro EFTU-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIF_IF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIF_IF2_dom3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIF_IF2_dom3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:308306 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116421 IMAGE-MGC_LOAD
  MGC:156829 IMAGE-MGC_LOAD
  MGC:187399 IMAGE-MGC_LOAD
  MGC:189382 IMAGE-MGC_LOAD
NCBI Gene 308306 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR43381 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP_EFTU_D4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Eif5b PhenoGen
PRINTS ELONGATNFCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_TR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023356 RatGTEx
  ENSRNOG00065027451 RatGTEx
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHV4_RAT UniProtKB/TrEMBL
  A0A8I5ZM99 ENTREZGENE, UniProtKB/TrEMBL
  A0JN31 ENTREZGENE
  B2GUV7 ENTREZGENE, UniProtKB/Swiss-Prot
  P70488 ENTREZGENE
  Q4FZQ8_RAT UniProtKB/TrEMBL
UniProt Secondary A0JN31 UniProtKB/Swiss-Prot
  P70488 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Eif5b  eukaryotic translation initiation factor 5B  LOC308306  annexin V-binding protein ABP-7  Symbol and Name updated 1299863 APPROVED