Advanced Search (OLGA)

Gene: Scaf4 (SR-related CTD-associated factor 4) Rattus norvegicus

Analyze

Symbol:

Scaf4

Name:

SR-related CTD-associated factor 4

RGD ID:

727896

Description:

Predicted to enable RNA binding activity and RNA polymerase II C-terminal domain phosphoserine binding activity. Involved in mRNA processing. Predicted to be active in nucleus. Orthologous to human SCAF4 (SR-related CTD associated factor 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CTD-binding SR-like protein rA4; LOC245924; serine/arginine-rich splicing factor 15; Sfrs15; splicing factor, arginine/serine-rich 15; SR-related and CTD-associated factor 4; Srsf15

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCAF4 (SR-related CTD associated factor 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Scaf4 (SR-related CTD-associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scaf4 (SR-related CTD associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCAF4 (SR-related CTD associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCAF4 (SR-related CTD associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scaf4 (SR-related CTD associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SCAF4 (SR-related CTD associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCAF4 (SR-related CTD associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scaf4 (SR-related CTD associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Scaf4 (SR-related CTD associated factor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SCAF4 (SR-related CTD associated factor 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Scaf4 (SR-related CTD-associated factor 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Scaf4 (SR-related CTD-associated factor 4)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	scaf4b (SR-related CTD-associated factor 4b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)
Danio rerio (zebrafish):	scaf4a (SR-related CTD-associated factor 4a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NRD1	Alliance	DIOPT (Hieranoid\|OrthoInspector\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	NRD1	Alliance	DIOPT (InParanoid\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG4266	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4266	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nrd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nrd-1	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	scaf4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	scaf4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	42,951,254 - 43,007,293 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	42,951,254 - 43,007,293 (-)	Ensembl				GRCr8
mRatBN7.2	11	29,460,479 - 29,521,153 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	29,465,106 - 29,521,153 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	38,153,091 - 38,209,037 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	30,824,482 - 30,880,426 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,013,841 - 30,069,810 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	30,371,713 - 30,428,073 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	30,371,713 - 30,428,073 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	33,987,199 - 34,047,580 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	29,751,872 - 29,807,911 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	29,152,167 - 29,208,170 (-)	NCBI		Celera
RGSC_v3.1	11	29,751,869 - 29,807,911 (+)	NCBI
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 11 (ISO)

Fliedner-Zweier syndrome (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Multicystic Dysplastic Kidney (ISO)

neurodevelopmental disorder with dysmorphic facies and distal limb anomalies (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-citrinin (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

atrazine (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlordecone (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

irinotecan (ISO)

lead(0) (ISO)

levonorgestrel (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

nitrates (ISO)

ochratoxin A (EXP)

paracetamol (ISO)

PCB138 (EXP)

phenylmercury acetate (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

testosterone undecanoate (ISO)

thioacetamide (EXP)

thiram (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA,IMP)

negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled (IBA,IEA,ISO,ISS)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

nucleic acid binding (IEA)

protein binding (IPI)

RNA binding (IBA,IEA,ISO,ISS)

RNA polymerase II C-terminal domain phosphoserine binding (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins.	Yuryev A, etal., Proc Natl Acad Sci U S A 1996 Jul 9;93(14):6975-80.

Additional References at PubMed

PMID:22681889	PMID:31104839

Genomics

Comparative Map Data

Scaf4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	42,951,254 - 43,007,293 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	42,951,254 - 43,007,293 (-)	Ensembl				GRCr8
mRatBN7.2	11	29,460,479 - 29,521,153 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	29,465,106 - 29,521,153 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	38,153,091 - 38,209,037 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	30,824,482 - 30,880,426 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,013,841 - 30,069,810 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	30,371,713 - 30,428,073 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	30,371,713 - 30,428,073 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	33,987,199 - 34,047,580 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	29,751,872 - 29,807,911 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	29,152,167 - 29,208,170 (-)	NCBI		Celera
RGSC_v3.1	11	29,751,869 - 29,807,911 (+)	NCBI
Cytogenetic Map	11	q11	NCBI

SCAF4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	31,671,000 - 31,732,118 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	31,670,804 - 31,732,184 (-)	Ensembl			hg38	GRCh38
GRCh37	21	33,043,313 - 33,104,431 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	31,965,416 - 32,026,133 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	21	18,226,630 - 18,287,746 (-)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	18,453,341 - 18,514,530 (-)	NCBI		HuRef
CHM1_1	21	32,605,296 - 32,666,386 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	30,038,984 - 30,100,110 (-)	NCBI		T2T-CHM13v2.0

Scaf4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	90,021,504 - 90,082,074 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	90,022,568 - 90,081,391 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	90,228,950 - 90,286,140 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	90,225,680 - 90,284,503 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	90,229,384 - 90,284,670 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	90,229,384 - 90,284,670 (-)	NCBI		MGSCv36	mm8
Celera	16	90,424,774 - 90,479,985 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	51.57	NCBI

Scaf4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	31,270,035 - 31,303,823 (-)	Ensembl
ChiLan1.0	NW_004955407	31,269,673 - 31,303,823 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCAF4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	27,790,329 - 27,852,175 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	22,649,978 - 22,711,795 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	18,039,507 - 18,101,700 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	31,421,160 - 31,482,543 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	31,421,160 - 31,482,543 (-)	Ensembl			panPan2	panpan1.1

SCAF4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	26,546,801 - 26,583,040 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	26,547,108 - 26,636,811 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	26,538,227 - 26,597,009 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	26,665,041 - 26,723,881 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	26,665,575 - 26,756,253 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	26,610,942 - 26,669,751 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	26,622,773 - 26,681,555 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	27,129,000 - 27,187,809 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Scaf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	27,123,792 - 27,168,322 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	10,307,835 - 10,342,588 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	10,307,868 - 10,342,952 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCAF4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	195,333,260 - 195,396,204 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	195,335,178 - 195,396,246 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	205,632,094 - 205,690,676 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCAF4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	60,397,173 - 60,459,295 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	60,397,233 - 60,458,553 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	2,938,854 - 3,002,480 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scaf4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	20,040,770 - 20,097,835 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	20,040,416 - 20,097,764 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Scaf4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	54,307,911 - 54,363,869 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Scaf4
199 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	301
Count of miRNA genes:	196
Interacting mature miRNAs:	225
Transcripts:	ENSRNOT00000002881, ENSRNOT00000047741
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	3818154	48818154	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	35323199	55805892	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	29958996	57754989	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	26318031	55806125	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

D11Rat15

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	29,528,418 - 29,528,587 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,435,339 - 30,435,507	NCBI	Rnor6.0
Rnor_5.0	11	34,054,821 - 34,054,989	UniSTS	Rnor5.0
RGSC_v3.4	11	29,744,438 - 29,744,606	UniSTS	RGSC3.4
RGSC_v3.4	11	29,744,366 - 29,744,736	RGD	RGSC3.4
Celera	11	29,215,379 - 29,215,547	UniSTS
RGSC_v3.1	11	29,744,438 - 29,744,606	RGD
RH 3.4 Map	11	167.8	RGD
RH 3.4 Map	11	167.8	UniSTS
RH 2.0 Map	11	469.5	RGD
SHRSP x BN Map	11	8.2299	RGD
FHH x ACI Map	11	12.19	RGD
Cytogenetic Map	11	q11	UniSTS

D11Wox13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	29,465,920 - 29,466,112 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,372,528 - 30,372,719	NCBI	Rnor6.0
Rnor_5.0	11	33,992,010 - 33,992,201	UniSTS	Rnor5.0
RGSC_v3.4	11	29,806,905 - 29,807,096	UniSTS	RGSC3.4
Celera	11	29,152,982 - 29,153,173	UniSTS
Cytogenetic Map	11	q11	UniSTS

D11Wox12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	29,479,193 - 29,479,495 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,385,801 - 30,386,102	NCBI	Rnor6.0
Rnor_5.0	11	34,005,283 - 34,005,584	UniSTS	Rnor5.0
RGSC_v3.4	11	29,793,522 - 29,793,823	UniSTS	RGSC3.4
Celera	11	29,166,237 - 29,166,538	UniSTS
Cytogenetic Map	11	q11	UniSTS

RH141768

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	29,464,340 - 29,464,554 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,370,948 - 30,371,161	NCBI	Rnor6.0
Rnor_5.0	11	33,990,430 - 33,990,643	UniSTS	Rnor5.0
RGSC_v3.4	11	29,808,463 - 29,808,676	UniSTS	RGSC3.4
Celera	11	29,151,402 - 29,151,615	UniSTS
RH 3.4 Map	11	179.5	UniSTS
Cytogenetic Map	11	q11	UniSTS

Sra4-pending

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	42,980,494 - 42,981,303 (+)	Marker Load Pipeline
mRatBN7.2	11	29,494,350 - 29,495,160 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,400,958 - 30,401,767	NCBI	Rnor6.0
Rnor_5.0	11	34,020,440 - 34,021,249	UniSTS	Rnor5.0
RGSC_v3.4	11	29,777,862 - 29,778,671	UniSTS	RGSC3.4
Celera	11	29,181,391 - 29,182,200	UniSTS
Cytogenetic Map	11	q11	UniSTS

G15982

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	29,489,064 - 29,489,119 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,395,674 - 30,395,728	NCBI	Rnor6.0
Rnor_5.0	11	34,015,156 - 34,015,210	UniSTS	Rnor5.0
Celera	11	29,176,107 - 29,176,161	UniSTS
Cytogenetic Map	11	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY387086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U49058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002881 ⟹ ENSRNOP00000002881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	42,960,967 - 42,990,961 (-)	Ensembl
mRatBN7.2 Ensembl	11	29,474,819 - 29,504,771 (-)	Ensembl
Rnor_6.0 Ensembl	11	30,381,426 - 30,412,143 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000047741 ⟹ ENSRNOP00000047258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	42,951,254 - 43,007,293 (-)	Ensembl
mRatBN7.2 Ensembl	11	29,465,106 - 29,521,153 (-)	Ensembl
Rnor_6.0 Ensembl	11	30,371,713 - 30,428,073 (-)	Ensembl

RefSeq Acc Id:

NM_001037347 ⟹ NP_001032424

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	42,951,254 - 43,007,293 (-)	NCBI
mRatBN7.2	11	29,465,106 - 29,521,153 (-)	NCBI
Rnor_6.0	11	30,371,713 - 30,428,073 (-)	NCBI
Rnor_5.0	11	33,987,199 - 34,047,580 (-)	NCBI
RGSC_v3.4	11	29,751,872 - 29,807,911 (+)	RGD
Celera	11	29,152,167 - 29,208,170 (-)	RGD

Sequence:

show sequence

GCTAGCCGGCTGGGCTAGTGTGAGCCAGTGCGTGAGGGCGCGGGGGGCCGTGTCAGCGCGACGC
AGAGCGCAGCCGCCACCACCAAACGGACATGTTGGAGCCCCGCGCTGCCGCTGCCTCCCAGCTC
TCCTCCAGCTCACAGAACTGAGCAGGGGCCCGCCGCCTCTGTCTGCGCTCGACCGGCCCAGCCT
CGCCGCCTCGGCCGCAGACCCTTCCTGCTCGGCCTTCGCCGCTTGTCGCCTCCCGTCCTCCTCC
CCCCCACGCCCTAGGGCCCTGCCGGCTCCCGGTCCTACTCAGCCGCGGCGCGAGGTCTATGTGA
CCGGCGGGCCCGGAGCAGCCGCCGCCGCAACGCGAACATGGACGCCGTCAACGCCTTCAACCAG
GAGCTCTTCTCACTTATGGATATGAAACCACCCATCTCTAGAGCCAAGATGATTCTTATTACTA
AAGCTGCTATTAAAGCTATTAAGCTTTATAAGCATGTTGTTCAAATAGTAGAAAAGTTCATCAA
AAAGTGTAAGCCAGAGTACAAGGTTCCAGGCCTGTATGTCATTGACTCCATCGTGAGACAGTCT
CGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTGAGAATATAACTGCTA
CATTCCAGTATTTATATCTTTGTCCATCTGAAGATAAGAGTAAAATAGTTCGTGTGCTAAATCT
TTGGCAAAAAAACGGAGTGTTCAAAATTGAAATCATTCAGCCGCTTTTGGACATGGCAGCAGGA
ACCAGCAATGCTGCTCCAGGAGCAGAAAATGTCACCAACAATGAAGGCTCACCTCCACCCCCAG
TAAAAGTCTCTTCTGAACTTCCACAAGCTCCCACAAACTCCATGCCTGCTGTCCCACAGCTGCC
CAGCTCCGATGCCTTTGCTGCCGTGGATCAACTGTTTCAGACGACTCAAGGCCAGCAGCTTCAG
CAGATCCTTCAGACTTTTCAACAACCTCCAAAACCACAGTCTCCCGCCCTTGACAGTGCTGTGA
TGGCTCAGGTTCAGGCTATCACAGCTCAGTTAAAGACAGCTCCTACACAACCACCTGAGCAAAA
AACTGCATTTGACAAGAAGCTGCTTGACAGATTTGATTATGATGATGAGCCAGAAGCTGTGGAA
GACTCGAAGAAAGAGGATGCTGTCGCCGTTGCCACCACAGCCCTTGCCACGGCTGCACCTCCTG
TGCCCGCTGCAGCCACACCTGCTGTTGCTCCTGCTGTGCCTGCGTCCTCTGCTACCTCTCCCCC
TCCTCCACAGGCGCCATTTGGGTACCCTGGAGACGGCATGCAGCAGCCAGCGTACACACAGCAT
CAAAATGTGGACCAGTTTCAACCTCGAATGATGGCACTGCAGCAGGATAGCATGCAGCATCAGG
TCCCACTTCCTCCTAACGGACAGATGCCAGGATTTGGGCTTCTCTCTGCACCACCTCCATTTCC
TCCCATGCCTCAGCCCGGGATGCCCCAGCCCGGGATGCCTCAGCCCGGGATGCCTCAGCCTGGG
TTGTCTCAGCCTGGGTTGCCCCAGCCCGGGATGCCTCAGCCCGGGATGCCTCAGCCCGGGATGC
CCCAGCCCGGGATGCCCCAGCCTGGGTTGGCTCAGCCTGGGTTGGCCCAGCCCGGGATGCCTCA
GCCCGGGATGCCCCAGCCCGGGATGCCCCAGCCCGGGATGCCCCAGCCTGGAATGCCTCCAACT
CCACCAGTACAGCCAACTTTCCAACCTACTTTTCAACCACAAAATGAACCCCATTCACAAAAGC
CACATCAGCAGGAAATGGAAGTAGAGCAGCCTTGTGTCACAGAGGTTAAGCGGCATGTGCCTGA
GAGCAGAAAGTCGAGATCCAGGTCACCAAAAAGAAGAAGATCTAGGTCTGGCTCTAGGTCTCGG
AGATCCCGCCACCGTCGGTCTCGGTCCCGGTCCAGGGATAGGCGCCGGCACTCGCCTCGCTCTC
GCTCTCAAGAAAGACGGGATCGAGAAAAAGAGAGGGAGCGGCGGCAGAAAGGCCTCCCTCAGAT
CAAGTCAGAGACTGCAAGTGTTTGCAGCACCACACTGTGGGTGGGACAGCTGGACAAAAGGACT
ACTCAGCAGGATGTTGCCAGTCTCTTAGAAGAGTTTGGTCCAATTGAATCAATTAACATGATTC
CTCCCAGGGGCTGCGCCTACATAGTTATGGTTCATAGGCAAGACGCATACCGTGCCCTGCAGAA
ACTGAGCCGAGGAAACTATAAAGTGAACCAGAAATCCATAAAGATTGCCTGGGCCTTAAACAAA
GGAATAAAGGCGGATTTTAAACAGTATTGGGATGTTGAACTTGGTGTTACTTACATTCCATGGG
ACAAAGTCAAAGCTGAGGAGCTGGAGAGTTTCTGTGAAGGAGGCATGTTGGACAGTGACACACT
TAACCCAGATTGGAAAGGCATCCCCAAAAAGCCTGAAAATGAAGTTGCCCAAAATGGAGGTGCA
GAAGCCTCCCACACAGAGCCAGTGTCCCCCATCCCTAAGCCTGTGCCCGTGCCTGTGCCTGCCC
TTCCTGTTCCTGCACCTATAACAGTACCACCTCCACAGGTCCCACCGCATCAGCCGGGCCCTCC
TGTCGTTGGTGCTCTCCAACCGCCTGCTTTCACTCCTCCCTTAGGGATCCCCCCTCCAGGCTTT
GGCCCTGGTGTTCCTCCTCCTCCTCCTCCTCCACCACCATTTTGGGGCCCAGGATTCAACCCAA
TGCATTTACCACCAGGTTTTCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCAT
TCCTCCACCTCACACTCCACCAATAAGCATCCCAAACTTGGTGTCTGGGGCTAGAGGAAATGCC
GAGTCTGCTGACAGTGCGAAAATGTATGGTTCTGCTGGGCCACCTGCTGCACCCACGAGTCTGC
CCACCCCTCCTGTAACCCAGCCTGTTTCACTGCTTGGCACTCAAGGAGTTGCACCTGGTCCTGT
GATTGGGCTCCAGGCACCCTCTACCGGTCTTCTCGGTGGCAGACCCGGCCTGATCCCACTCCAG
CGCCCCCCAGGAATGCCTCCACCACACTTGCAACGGTTCCCTATGATGCCACCTCGGCCCATGC
CACCTCACATGATGCACAGGGGTCCGCCACCAGGACCAGGGGGCTTTGCTATGCCTCCACCTCA
TGGAATGAAAGGGCCTTTCCCACCACATGGCCCCTTTGTTAGGCCTGGTGGAATGCCAGGGCTT
GGGGGCCCAGGCCCAGGCCCAGGAGGATCAGAAGACAGAGATGGAAGGCAACAGCAACCGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCACCACC
ACAGCAGTCACAGACACAGCAGCAGCCAGCGCCATCCCAGCAGCCAGCGCCAGCTCAGCAGCAG
CCACAGCAGTTTAGAAATGATAACAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTG
GAAGAAGATCTTTTGGAAGTAGGGTGGAAAATGACCGGGAGCGGTATGGGAGCCGTAGTGATGA
GAGAGATAATAGCAACCGTGAAAGGAGAGAGTGGGGAAGGAGGAGCCCTGAGCGGGACAGACAC
AGAGACTTGGAAGAGAGAAGTAGACGCTCTAGTGGGCATCGGGACAGAGACAGGGATTCTAGAG
ATAGAGAGTCCCGTAGAGAGAAGGAAGAAAGTAGAGGAAAGGAGAAGCACGAGGTGGCAGACAG
GGCAGGTGGTAACAAAGCTGTCGAAGCTCCCCTTAGCCAAGTGGGAAACACAGACACTGTTTCA
GAACTTAATAAGGGGGAGGCCATGGCCACAGTGGTAAAACCTGAAGAGTCACCTGCTGAGGCTA
CCTCATCCGTTGAACCTGAGAAGGATTCTGGCTCAGCAGCAGAGGCTCCTCGCTAGAGACTGGA
TTTGACAGAATGTGACAGTGACACTTGGGTGTAGAACGTGAGGTGTACAGATGCTGTATAATAT
TCGCTCCTGCTACATCACTCCACAGTAGTTGGTGGGGATTGTGAGCAATTTGATTGCTTTCCTT
CTATTTAAAAATAGCCACAAAATAACAAAAAATACTGAAGATATATTACCCCTTTTTTTGCTGT
AACTTTTTAAAAGTTTTGACTTTTAAAAGTTTACAAATCCTAATTAGAAGTGCTCTCTATTTTT
TTTTTTTAATTTAAGAAAAGGTAACGGTGAAAAGCTCCTCAAACAATAGGGATGTTTTTAATAA
ACTCTATTTTCGTAAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001032424	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52659	(Get FASTA)	NCBI Sequence Viewer
	AAC52660	(Get FASTA)	NCBI Sequence Viewer
	AAQ91056	(Get FASTA)	NCBI Sequence Viewer
	EDM10683	(Get FASTA)	NCBI Sequence Viewer
	EDM10684	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000047258
GenBank Protein	Q63627	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001032424 ⟸ NM_001037347

- UniProtKB:

Q63627 (UniProtKB/Swiss-Prot), F1LSM7 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLY
VIDSIVRQSRHQFGTDKDVFGPRFSENITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEII
QPLLDMAAGTSNAAPGAENVTNNEGSPPPPVKVSSELPQAPTNSMPAVPQLPSSDAFAAVDQLF
QTTQGQQLQQILQTFQQPPKPQSPALDSAVMAQVQAITAQLKTAPTQPPEQKTAFDKKLLDRFD
YDDEPEAVEDSKKEDAVAVATTALATAAPPVPAAATPAVAPAVPASSATSPPPPQAPFGYPGDG
MQQPAYTQHQNVDQFQPRMMALQQDSMQHQVPLPPNGQMPGFGLLSAPPPFPPMPQPGMPQPGM
PQPGMPQPGLSQPGLPQPGMPQPGMPQPGMPQPGMPQPGLAQPGLAQPGMPQPGMPQPGMPQPG
MPQPGMPPTPPVQPTFQPTFQPQNEPHSQKPHQQEMEVEQPCVTEVKRHVPESRKSRSRSPKRR
RSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTL
WVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKS
IKIAWALNKGIKADFKQYWDVELGVTYIPWDKVKAEELESFCEGGMLDSDTLNPDWKGIPKKPE
NEVAQNGGAEASHTEPVSPIPKPVPVPVPALPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTP
PLGIPPPGFGPGVPPPPPPPPPFWGPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPN
LVSGARGNAESADSAKMYGSAGPPAAPTSLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLG
GRPGLIPLQRPPGMPPPHLQRFPMMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPF
VRPGGMPGLGGPGPGPGGSEDRDGRQQQPQQQQQQQQQQQQQQQQQQQQPPPQQSQTQQQPAPS
QQPAPAQQQPQQFRNDNRQQFNSGRDQERFGRRSFGSRVENDRERYGSRSDERDNSNRERREWG
RRSPERDRHRDLEERSRRSSGHRDRDRDSRDRESRREKEESRGKEKHEVADRAGGNKAVEAPLS
QVGNTDTVSELNKGEAMATVVKPEESPAEATSSVEPEKDSGSAAEAPR

hide sequence

Ensembl Acc Id:

ENSRNOP00000047258 ⟸ ENSRNOT00000047741

Ensembl Acc Id:

ENSRNOP00000002881 ⟸ ENSRNOT00000002881

Protein Domains

CID RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63627-F1-model_v2	AlphaFold	Q63627	1-1200	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698044

Promoter ID:

EPDNEW_R8569

Type:

initiation region

Name:

Scaf4_1

Description:

SR-related CTD-associated factor 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	30,428,134 - 30,428,194	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727896	AgrOrtholog
BioCyc Gene	G2FUF-21953	BioCyc
Ensembl Genes	ENSRNOG00000002104	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000047741	ENTREZGENE
Gene3D-CATH	1.25.40.90	UniProtKB/Swiss-Prot
	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	CID_dom	UniProtKB/Swiss-Prot
	ENTH_VHS	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
	SCAF4_RRM	UniProtKB/Swiss-Prot
	SR-CTD_assoc_factor	UniProtKB/Swiss-Prot
NCBI Gene	245924	ENTREZGENE
PANTHER	RNA PROCESSING PROTEIN LD23810P	UniProtKB/Swiss-Prot
	SR-RELATED AND CTD-ASSOCIATED FACTOR 4	UniProtKB/Swiss-Prot
Pfam	CTD_bind	UniProtKB/Swiss-Prot
	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Scaf4	PhenoGen
PROSITE	CID	UniProtKB/Swiss-Prot
	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000002104	RatGTEx
SMART	RPR	UniProtKB/Swiss-Prot
	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48464	UniProtKB/Swiss-Prot
	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A8L2QMU1_RAT	UniProtKB/TrEMBL
	F1LSM7	ENTREZGENE
	F1M994_RAT	UniProtKB/TrEMBL
	Q63627	ENTREZGENE
	Q6TUE4_RAT	UniProtKB/TrEMBL
	SFR15_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	F1LSM7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-01	Scaf4	SR-related CTD-associated factor 4	Sfrs15	splicing factor, arginine/serine-rich 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-22	Sfrs15	splicing factor, arginine/serine-rich 15	Scaf4	SR-related CTD-associated factor 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-13	Srsf15	serine/arginine-rich splicing factor 15	Sfrs15	splicing factor, arginine/serine-rich 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-13	Scaf4	SR-related CTD-associated factor 4	Srsf15	serine/arginine-rich splicing factor 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Sfrs15	splicing factor, arginine/serine-rich 15	LOC245924	CTD-binding SR-like protein rA4	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM