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Gene: Kirrel1 (kirre like nephrin family adhesion molecule 1) Rattus norvegicus

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Symbol:

Kirrel1

Name:

kirre like nephrin family adhesion molecule 1

RGD ID:

727883

Description:

Predicted to enable cell adhesion molecule binding activity and myosin binding activity. Predicted to be involved in cell-cell adhesion; cell-cell junction maintenance; and glomerular filtration. Predicted to act upstream of or within positive regulation of actin filament polymerization and renal protein absorption. Located in cell projection membrane; cell-cell junction; and membrane raft. Human ortholog(s) of this gene implicated in nephrotic syndrome type 23. Orthologous to human KIRREL1 (kirre like nephrin family adhesion molecule 1); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 4,4'-diaminodiphenylmethane; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

kin of IRRE like (Drosophila); kin of IRRE like 1; kin of IRRE like 1 (Drosophila); kin of IRRE-like protein 1; kin of irregular chiasm-like protein 1; Kirrel; Neph1; nephrin 1; nephrin-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIRREL1 (kirre like nephrin family adhesion molecule 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Kirrel1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kirrel1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIRREL1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIRREL1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kirrel1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIRREL1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIRREL1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kirrel1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Kirrel1 (kirre like nephrin family adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	KIRREL1 (kirre like nephrin family adhesion molecule 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Kirrel1 (kirre like nephrin family adhesion molecule 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kirrel1a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kirre	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kirre	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	rst	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	rst	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	syg-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	syg-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Danio rerio (zebrafish):	kirrel1b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kirrel1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	174,819,564 - 174,912,998 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	174,819,572 - 174,912,960 (-)	Ensembl				GRCr8
mRatBN7.2	2	172,521,644 - 172,615,057 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	172,525,245 - 172,615,299 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	179,676,244 - 179,730,913 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	177,698,563 - 177,753,230 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	172,286,976 - 172,341,500 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	186,420,743 - 186,515,209 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	186,420,795 - 186,515,135 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	205,825,636 - 205,919,683 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	179,114,757 - 179,169,185 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	166,483,236 - 166,536,703 (-)	NCBI		Celera
RGSC_v3.1	2	179,064,862 - 179,119,291 (-)	NCBI
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

nephrotic syndrome type 23 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine (ISO)

4,4'-diaminodiphenylmethane (EXP)

aflatoxin B1 (EXP,ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

dibutyl phthalate (ISO)

dimethylarsinous acid (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

fenamidone (ISO)

folic acid (ISO)

FR900359 (ISO)

geldanamycin (ISO)

indole-3-methanol (EXP)

lipopolysaccharide (ISO)

methotrexate (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (EXP)

naled (ISO)

nitrofen (EXP)

okadaic acid (ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Y-27632 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IBA,ISO)

cell-cell junction maintenance (ISO)

glomerular filtration (ISO)

negative regulation of protein phosphorylation (ISO)

positive regulation of actin filament polymerization (ISO)

renal protein absorption (ISO)

Cellular Component

cell projection membrane (IDA)

cell-cell junction (IBA,IDA,IEA,ISO)

dendritic shaft (IEA,ISO)

membrane raft (IDA)

perinuclear region of cytoplasm (ISO)

plasma membrane (IBA,IEA,ISO)

Molecular Function

cell adhesion molecule binding (IBA)

myosin binding (ISO)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Motor protein Myo1c is a podocyte protein that facilitates the transport of slit diaphragm protein Neph1 to the podocyte membrane.	Arif E, etal., Mol Cell Biol. 2011 May;31(10):2134-50. doi: 10.1128/MCB.05051-11. Epub 2011 Mar 14.
2.	Nephrin and Neph1 co-localize at the podocyte foot process intercellular junction and form cis hetero-oligomers.	Barletta GM, etal., J Biol Chem 2003 May 23;278(21):19266-71. Epub 2003 Mar 19.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Neph1 and nephrin interaction in the slit diaphragm is an important determinant of glomerular permeability.	Liu G, etal., J Clin Invest 2003 Jul;112(2):209-21.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11416156	PMID:15979540	PMID:16874800	PMID:17923684	PMID:18258597	PMID:18715943	PMID:18922801	PMID:21277866	PMID:21306299	PMID:23376485	PMID:23570724	PMID:25298195

Genomics

Comparative Map Data

Kirrel1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	174,819,564 - 174,912,998 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	174,819,572 - 174,912,960 (-)	Ensembl				GRCr8
mRatBN7.2	2	172,521,644 - 172,615,057 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	172,525,245 - 172,615,299 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	179,676,244 - 179,730,913 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	177,698,563 - 177,753,230 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	172,286,976 - 172,341,500 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	186,420,743 - 186,515,209 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	186,420,795 - 186,515,135 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	205,825,636 - 205,919,683 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	179,114,757 - 179,169,185 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	166,483,236 - 166,536,703 (-)	NCBI		Celera
RGSC_v3.1	2	179,064,862 - 179,119,291 (-)	NCBI
Cytogenetic Map	2	q34	NCBI

KIRREL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	157,993,645 - 158,100,262 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	157,993,273 - 158,100,262 (+)	Ensembl			hg38	GRCh38
GRCh37	1	157,963,435 - 158,070,052 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	156,229,687 - 156,332,465 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	154,776,135 - 154,878,919	NCBI
Celera	1	131,034,468 - 131,136,921 (+)	NCBI		Celera
Cytogenetic Map	1	q23.1	NCBI
HuRef	1	129,321,031 - 129,423,944 (+)	NCBI		HuRef
CHM1_1	1	159,359,575 - 159,462,305 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	157,130,739 - 157,237,353 (+)	NCBI		T2T-CHM13v2.0

Kirrel1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	86,985,900 - 87,082,084 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	86,985,900 - 87,082,054 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	87,078,593 - 87,174,777 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	87,078,593 - 87,174,747 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	86,882,514 - 86,978,669 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	87,168,739 - 87,227,036 (-)	NCBI		MGSCv36	mm8
Celera	3	87,105,684 - 87,203,142 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	38.18	NCBI

Kirrel1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	9,821,303 - 9,916,667 (+)	Ensembl
ChiLan1.0	NW_004955468	9,820,649 - 9,919,958 (+)	NCBI	ChiLan1.0	ChiLan1.0

KIRREL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	91,736,817 - 91,842,857 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	91,480,731 - 91,586,707 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	133,363,880 - 133,465,717 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	137,237,218 - 137,261,101 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	137,233,701 - 137,255,927 (+)	Ensembl			panPan2	panpan1.1

KIRREL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	23,530,930 - 23,593,957 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	23,530,885 - 23,594,236 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	23,556,953 - 23,620,213 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	23,696,328 - 23,762,792 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	23,699,336 - 23,763,035 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	23,440,193 - 23,506,559 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	23,993,900 - 24,059,856 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	24,394,780 - 24,461,104 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kirrel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	3,719,999 - 3,761,108 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936847	821,479 - 841,988 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936847	820,538 - 844,829 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIRREL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	92,176,746 - 92,290,610 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	92,173,897 - 92,290,887 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	100,513,435 - 100,628,217 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIRREL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	5,811,111 - 5,918,064 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	5,816,187 - 5,917,968 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	5,003,417 - 5,112,184 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kirrel1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	2,829,496 - 2,922,352 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	2,824,716 - 2,922,300 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kirrel1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	66,396,787 - 66,485,326 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Kirrel1
551 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	100
Count of miRNA genes:	82
Interacting mature miRNAs:	87
Transcripts:	ENSRNOT00000031743
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	169358774	214358774	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	199723085	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	145807215	190807215	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	199723085	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	199723085	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	205135267	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	199723085	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170652929	215652929	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
4889834	Pur24	Proteinuria QTL 24	5.8	0.014	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	171994826	205135428	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	178247591	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	154723085	178247591	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	178247591	Rat
7771605	Memor19	Memory QTL 19		0.00001	exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	2	172499769	175588177	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	199723085	Rat
7771603	Bp371	Blood pressure QTL 371		0.00001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172499769	175588177	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	159440760	195313808	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
1357991	Ael2	Aortic elastin QTL 2	4.2	0.000071	aorta elastin amount (VT:0003905)	aortic elastin	2	169227906	214227906	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	178247591	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	178247591	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	178247591	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	147287892	192287892	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	165453811	210453811	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	163253030	208253030	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat

Markers in Region

BF396370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	172,557,536 - 172,557,699 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	186,456,981 - 186,457,143	NCBI	Rnor6.0
Rnor_5.0	2	205,861,464 - 205,861,626	UniSTS	Rnor5.0
RGSC_v3.4	2	179,145,193 - 179,145,355	UniSTS	RGSC3.4
Celera	2	166,513,759 - 166,513,921	UniSTS
RH 3.4 Map	2	1130.4	UniSTS
Cytogenetic Map	2	q34	UniSTS

PMC164293P3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	172,527,567 - 172,527,770 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	186,426,667 - 186,426,869	NCBI	Rnor6.0
Rnor_5.0	2	205,831,560 - 205,831,762	UniSTS	Rnor5.0
RGSC_v3.4	2	179,116,201 - 179,116,403	UniSTS	RGSC3.4
Celera	2	166,484,668 - 166,484,870	UniSTS
Cytogenetic Map	2	q34	UniSTS

AU049378

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	172,569,537 - 172,569,780 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	186,468,982 - 186,469,224	NCBI	Rnor6.0
Rnor_5.0	2	205,873,465 - 205,873,707	UniSTS	Rnor5.0
RGSC_v3.4	2	179,157,194 - 179,157,436	UniSTS	RGSC3.4
Celera	2	166,525,761 - 166,526,003	UniSTS
Cytogenetic Map	2	q34	UniSTS

UniSTS:234720

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	172,525,660 - 172,525,894 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	186,424,760 - 186,424,993	NCBI	Rnor6.0
Rnor_5.0	2	205,829,653 - 205,829,886	UniSTS	Rnor5.0
RGSC_v3.4	2	179,114,294 - 179,114,527	UniSTS	RGSC3.4
Celera	2	166,482,773 - 166,483,006	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	28	59	6	292	128	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_207606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY249056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY271309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031743 ⟹ ENSRNOP00000033900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	174,819,572 - 174,912,960 (-)	Ensembl
mRatBN7.2 Ensembl	2	172,525,245 - 172,614,888 (-)	Ensembl
Rnor_6.0 Ensembl	2	186,425,223 - 186,480,278 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077375 ⟹ ENSRNOP00000070270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	174,819,572 - 174,860,392 (-)	Ensembl
mRatBN7.2 Ensembl	2	172,525,245 - 172,615,299 (-)	Ensembl
Rnor_6.0 Ensembl	2	186,420,795 - 186,515,135 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000134383 ⟹ ENSRNOP00000100429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	174,819,572 - 174,912,943 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000145740 ⟹ ENSRNOP00000099971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	174,819,572 - 174,847,434 (-)	Ensembl

RefSeq Acc Id:

NM_207606 ⟹ NP_997489

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	174,819,564 - 174,912,960 (-)	NCBI
mRatBN7.2	2	172,521,644 - 172,615,035 (-)	NCBI
Rnor_6.0	2	186,425,223 - 186,480,278 (-)	NCBI
Rnor_5.0	2	205,825,636 - 205,919,683 (-)	NCBI
RGSC_v3.4	2	179,114,757 - 179,169,185 (-)	RGD
Celera	2	166,483,236 - 166,536,703 (-)	RGD

Sequence:

show sequence

ATGACTCTGGAGAACCGTAGCACATGTCTAATGACCTGCCAATCAAGCCTGCTCCCCAAGAAGC
CCAGGTTTCTGAGTCAGAAGATGTGGGCTCCACACTTAGTCGTTGCTTATCTTATCTTTGTGAC
TTTGGCTTTGGCGTTGCCTGGGACCCAGACTCGCTTCAGCCAGGAGCCAGCTGATCAGACCGTG
GTAGCCGGACACCGGGCAGTGCTCCCGTGCGTGCTCCTCAACTACTCTGGGATCGTACAATGGA
CCAAGGACGGGCTGGCTCTGGGTATGGGCCAGGGCCTCAAAGCCTGGCCACGGTACCGAGTCGT
GGGCTCTGCGGATGCTGGGCAATACAACTTGGAGATCACGGATGCCGAGCTGTCTGATGACGCT
TCCTATGAGTGCCAGGCCACGGAGGCTGCCCTGCGCTCTCGGCGGGCCAAACTCACCGTGCTCA
TTCCTCCAGAGGACACAAGGATTGATGGGGGCCCGGTGATTCTGCTGCAAGCAGGCACCCCCTA
CAACCTCACATGCCGAGCATTTAATGCCAAGCCTGCTGCCACCATCATTTGGTTCCGGGATGGG
ACACAGCAGGAGGGGGCTGTGACTAGCACGGAGCTGCTGAAGGATGGGAAAAGGGAGACTACAA
TCAGCCAGCTACTCATTCAGCCCACAGACCTAGACATCGGCCGCGTATTCACCTGTCGCAGCAT
GAATGAGGCCATCCCCAATGGCAAGGAGACGTCCATTGAGCTGGATGTACACCACCCTCCTACA
GTGACTCTGTCCATTGAGCCCCAGACAGTGCTGGAGGGCGAGCGCGTCATCTTTACGTGCCAGG
CCACAGCCAACCCGGAGATCCTGGGCTACAGGTGGGCCAAAGGGGGGTTCCTGATTGAAGACGC
CCATGAGAGTCGCTATGAGACAAATGTTGATTATTCCTTCTTCACGGAGCCCGTGTCTTGTGAG
GTTGATAGCAAAGTCGGGAGCACCAATGTCAGCACTGTAGTGAACGTTCACTTTGCCCCCCGGA
TTGTAGTTTACCCAAAGCCCACAACCACAGACATTGGATCTGATGTGACCCTCACTTGTGTCTG
GGTTGGGAATCCCCCCCTCACCCTCACCTGGACCAAGAAGGATTCAAACATGGTCCTGAGTAAC
AGCAATCAACTGTTGCTGAAGTCAGTGACCCAGGCAGATGCTGGCACCTATACCTGCCGTGCCA
TAGTGCCTCGAATCGGAGTGGCTGAGCGAGAGGTACCCCTTTATGTGAATGGACCCCCTATCAT
CTCCAGCGAGGCGGTGCAGTTTGCTGTGAGAGGGGATGGCGGTAAGGTGGAGTGCTTCATCGGG
AGTACCCCCCCTCCGGATCGAATTGCATGGGCTTGGAAGGAGAACTTCCTAGAGGTGGGGACAC
TGGAACGATACACTGTGGAGAGGACAAACTCAGGCAGTGGTGTGCTGTCCACTCTCACCATCAA
TAACGTCATGGAGGCCGACTTCCAGACCCACTACAACTGCACTGCCTGGAACAGCTTTGGACCA
GGCACAGCCATCATCCAGCTGGAGGAGCGAGAGGTGTTACCTGTGGGCATCATCGCTGGGGCCA
CCATCGGTGCTGGCATCCTGCTCGTCTTCTCTTTTGCTGCCTTAGTGTTCTTTCTCTACCGACG
TCGCAAAGGCAGTCGAAAGGATGTGACGTTGAGGAAGCTGGACATCAAGGTAGAGACAGTGAAT
CGGGAGCCACTTACAATGCACTCTGACCGGGAGGATGATACCACCAGCATTTCCACGGCAACTC
GGGTCATGAAAGCCATCTACTCGTCCTTTAAGGATGATGTGGATCTGAAACAGGACCTGCACTG
TGACACCATCGAGACCCGGGAAGAGTATGAGATGAAAGATCCAACCAATGGTTATTACAACGTG
CGTGCCCACGAAGATCGCCCATCTTCCAGGGCGGTGCTATATGCTGACTACCGTGCCCCTGGCC
CTACTCGTTTTGATGGGCGCCCATCATCCCGCCTGTCCCACTCCAGTGGTTATGCCCAGCTGAA
TACATACAGCCGAGCCCCCGCCTCTGACTATGGCACAGAGCCGACACCCTCTGGCCCTTCTGCT
CCAGGTGGCACCGATACAACCAGCCAGCTGTCCTACGAGAACTATGAGAAGTTCAACTCCCACC
CCTTTCCCGGGGCAGCTGGGTATCCTACCTACCGTCTAGGCTACCCCCAGGCCCCACCCTCTGG
CCTGGAGAGGACCCCCTATGAAGCCTATGACCCTATTGGCAAGTATGCCACCGCCACTCGGTTC
TCCTACACCTCTCAACACTCAGACTACGGCCAGCGATTCCAGCAGCGCATGCAGACTCACGTGT
AG

hide sequence

RefSeq Acc Id:

XM_006232675 ⟹ XP_006232737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	174,819,564 - 174,912,998 (-)	NCBI
mRatBN7.2	2	172,521,644 - 172,615,057 (-)	NCBI
Rnor_6.0	2	186,420,743 - 186,515,209 (-)	NCBI
Rnor_5.0	2	205,825,636 - 205,919,683 (-)	NCBI

Sequence:

show sequence

GCCGGGGAGGGAAGAGAGGGAGAGAGAGAGAGCGGCGCGGAGGTTGAGAGAGGCCCGGAGAGAT
AAAGCCGGAGGGCAGAAATTATTAGGGGGCGCGGGACGAGAGGAGGGGCCAGGGGAGCGAGCCC
GCGGCTAGAGAGGCAAGCGAGTGTGCGCCTTGTGTGCAAGGGCGGGAGGGAGAAGAGAGAGCCA
GCGGCGGCCCGGCTTGCGCCGACTCGGGCCCAGCGGCGGGCGGACAGCATGCTGAGCTTCCTCA
TCTGGATCCCCACTCTCTTCAACACTTTCTCACAAGCAGGGCTTTAGGAATGACTCTGGAGAAC
CGTAGCACATGTCTAATGACCTGCCAATCAAGCCTGCTCCCCAAGAAGCCCAGGTTTCTGAGTC
AGAAGATGTGGGCTCCACACTTAGTCGTTGCTTATCTTATCTTTGTGACTTTGGCTTTGGCGTT
GCCTGGGACCCAGACTCGCTTCAGCCAGGAGCCAGCTGATCAGACCGTGGTAGCCGGACACCGG
GCAGTGCTCCCGTGCGTGCTCCTCAACTACTCTGGGATCGTACAATGGACCAAGGACGGGCTGG
CTCTGGGTATGGGCCAGGGCCTCAAAGCCTGGCCACGGTACCGAGTCGTGGGCTCTGCGGATGC
TGGGCAATACAACTTGGAGATCACGGATGCCGAGCTGTCTGATGACGCTTCCTATGAGTGCCAG
GCCACGGAGGCTGCCCTGCGCTCTCGGCGGGCCAAACTCACCGTGCTCATTCCTCCAGAGGACA
CAAGGATTGATGGGGGCCCGGTGATTCTGCTGCAAGCAGGCACCCCCTACAACCTCACATGCCG
AGCATTTAATGCCAAGCCTGCTGCCACCATCATTTGGTTCCGGGATGGGACACAGCAGGAGGGG
GCTGTGACTAGCACGGAGCTGCTGAAGGATGGGAAAAGGGAGACTACAATCAGCCAGCTACTCA
TTCAGCCCACAGACCTAGACATCGGCCGCGTATTCACCTGTCGCAGCATGAATGAGGCCATCCC
CAATGGCAAGGAGACGTCCATTGAGCTGGATGTACACCACCCTCCTACAGTGACTCTGTCCATT
GAGCCCCAGACAGTGCTGGAGGGCGAGCGCGTCATCTTTACGTGCCAGGCCACAGCCAACCCGG
AGATCCTGGGCTACAGGTGGGCCAAAGGGGGGTTCCTGATTGAAGACGCCCATGAGAGTCGCTA
TGAGACAAATGTTGATTATTCCTTCTTCACGGAGCCCGTGTCTTGTGAGGTTTATAACAAAGTC
GGGAGCACCAATGTCAGCACTTTAGTGAACGTTCACTTTGCCCCCCGGATTGTAGTTTACCCAA
AGCCCACAACCACAGACATTGGATCTGATGTGACCCTCACTTGTGTCTGGGTTGGGAATCCCCC
CCTCACCCTCACCTGGACCAAGAAGGATTCAAACATGGGGCCCAGGCTTCCTGGCTCCCCACCC
GAGGCTAATCTCTCTGCCCAGGTCCTGAGTAACAGCAATCAACTGTTGCTGAAGTCAGTGACCC
AGGCAGATGCTGGCACCTATACCTGCCGTGCCATAGTGCCTCGAATCGGAGTGGCTGAGCGAGA
GGTACCCCTTTATGTGAATGGACCCCCTATCATCTCCAGCGAGGCGGTGCAGTTTGCTGTGAGA
GGGGATGGCGGTAAGGTGGAGTGCTTCATCGGGAGTACCCCCCCTCCGGATCGAATTGCATGGG
CTTGGAAGGAGAACTTCCTAGAGGTGGGGACACTGGAACGATACACTGTGGAGAGGACAAACTC
AGGCAGTGGTGTGCTGTCCACTCTCACCATCAATAACGTCATGGAGGCCGACTTCCAGACCCAC
TACAACTGCACTGCCTGGAACAGCTTTGGACCAGGCACAGCCATCATCCAGCTGGAGGAGCGAG
AGGTGTTACCTGTGGGCATCATCGCTGGGGCCACCATCGGTGCTGGCATCCTGCTCGTCTTCTC
TTTTGCTGCCTTAGTGTTCTTTCTCTACCGACGTCGCAAAGGCAGTCGAAAGGATGTGACGTTG
AGGAAGCTGGACATCAAGGTAGAGACAGTGAATCGGGAGCCACTTACAATGCACTCTGACCGGG
AGGATGATACCACCAGCATTTCCACGGCAACTCGGGTCATGAAAGCCATCTACTCGTCCTTTAA
GGATGATGTGGATCTGAAACAGGACCTGCACTGTGACACCATCGAGACCCGGGAAGAGTATGAG
ATGAAGGATCCAACCAATGGTTATTACAACGTGCGTGCCCACGAAGATCGCCCATCTTCCAGGG
CGGTGCTATATGCTGACTACCGTGCCCCTGGCCCTACTCGTTTTGATGGGCGCCCATCATCCCG
CCTCTCCCACTCCAGTGGTTATGCCCAGCTGAATACATACAGCCGAGCCCCCGCCTCTGACTAT
GGCACAGAGCCGACACCCTCTGGCCCTTCTGCTCCAGGTGGCACCGATACAACCAGCCAGCTGT
CCTACGAGAACTATGAGAAGTTCAACTCCCACCCCTTTCCCGGGGCAGCTGGGTATCCTACCTA
CCGTCTAGGCTACCCCCAGGCCCCACCCTCTGGCCTGGAGAGGACCCCCTATGAAGCCTATGAC
CCTATTGGCAAGTATGCCACCGCCACTCGGTTCTCCTACACCTCTCAACACTCAGACTACGGCC
AGCGATTCCAGCAGCGCATGCAGACTCACGTGTAGAGGCTGGAGTCTGGCTGGGGTATCTCTGC
GGGGCAGAGGAGATGGCTTCCCAGCATTCCCTGACATTCAGGGACATTGCTCGTTGCTCCTTTC
GTGGACCCAGCCTTTCTCCTCCTGGCCATCACAAATAAGGAGCAGGTCTCCCAGTAACACCCCA
TCCCAAGGATGGTGCTCTGCGCATGCCCCAGTCTCCCGGGCCAGCCCTTTCCTCTTCTTCAGGA
GGATATCTCTTCTGACCTTTGTTCTGCCTGACCCAAGCATGGGGAAAGGAGAGGGGAGGTTGGG
GGAGGGGAGGAGAGAGGAGAGGAGCACAGTCTGTCATTTCCTTCTGTCCTGCTTCTCTGAGCTC
CCGTAGGTGGTCATGGAGATATGCCGAGGTGGGCAGGCCGCTGGAACGTAGGAGAGCGCACCAG
TCCCGGTCTTGATTTCTTGATACCTTGTGTTCATCTTTCCCATCTCAGGGGATTACAGATGAAA
CAATGAGTTCAAATCCAGCCCTTGGTCAGCTGGGGTCAAAATACCAGTCACTCTGGCTGCTACT
GTGGCTCTCTGTCTGAGTGAAGAGGGCTTCAAAAAATCCCCAAGATCACTGATTCCTTTCTTCT
CAGCTTTGTGCTGGACCAGCCAAGATGTGTCCTGGATGTGAGCAAGTCGCGGTCAGGACTAAGT
CCTGGTTGACAGGCAAGGGTCCACTGTGTAGTGCATGGCAGTTTCCAGGTCCAGCACTAGTGGG
AGCCACGCAAGTTTCCTTCTTCTAAACGGTATTGGGCCCCACTTCTTGGTGTTGACTCTTGAGC
CTTGGTAGAGCAGAGGCTACTTTTCATGGGGCTGTCTTTCAAAAGCAATAAAACCTCCTTTGGA
ATGAGAAGTTGTAGGGTTTCCCCGCTATACGCAAGTCCCTATGGAAAGGAAAGGGGCGCCCGCC
CTCCAGCAGGCTCCTAACACCTCGTATTGCTCTAGCTGAGTCTCTGAGCACTTTGATTCTAGTA
CATACGATCTGGATGGTGAGACCTGCCTTCTGGTGGATTCTGATAGAGCGCAGCAGTGTCCCGA
GCCTCAGGCTCTACTATCCTACCTGGTCTAACTACTCACCGTAGCTAGAAACTGCCTTGCAGAT
GGCGTGGTAGGGGCTTTATCCAGACAAATTTTGGTTTCGTCTCCTCCTCACCGGCCCCCATCCC
ACCCAATCAGATTCCTTCTTTCATTTTCAGTGCCTTGAGTGTCAGGTTTGTGATGATGTCCCTG
TGTGGGGAGCAGGGACCTTGTGAATCTCAGCTTGTCCCATGTTAGCATCCAGGGAGACACAAAT
GAAGAGGATGGAAGGGAAAGGGGGCCGGGAAATGGCTGCCGGAAAATTCTTACCGGCCTAGATG
GTGATCCTAGTGCAGAAGAACACACCAGGCACTGAATTCCATAGGCCATGTTGTCTTTCCCACA
CATTCTGCACACATGAGTGCCCACACATTCCATGCCACGTCTCATCTACCACCTTCTGACCAAA
GAGAACCTGTAACTAGTGTTTCAGCCTCACCTTCCCAAGAAACCAACTGCCCAACAGGATTCTT
CCATCCACAGTCCCGATGAGGCCTGCCTGACAGGAGGAAGTATTCCCAGAATACTCCTGGCTTC
TTCTCATTGGTCACCATTCGTTAGTCATGTTTACTTTAATGAGTTACCTGTTCATCAGGCCCGT
TCCATCACTAACCCTCTAGATGGGTCTGTAGGGTGACATTCCCTGCCATCTCCTTTCCGATAAG
GACCAGGTAATGTCCAGGAATCAAGGAGAGCCGTTTGCAGCCTGGCTGGCAGGCAGGCAGCTGC
TGCGTCCTCTTCTCCAGTGAGTGCGTCCACACAGAGCGGCCCTTCCTGCAGCAGTGACAGACTC
ATAGCTGTATTCCGGTTCAGAAGACTCTCGCTTTCACGAGAGCTCAGGGAGGCAGTGTAGGTTC
TAGTGAGTATGGATTTGTGCAGGTTTTCAGTTTCACTCGCACCCGAAGCCGTGGGCGATCAAAC
ATCCTGTATAGACTTTTGAAGTCTAAATAGAGTGACATTTTAAACAGCAATACTCCCTAAAGTA
GTCATCTTGTTTGGGGTTTGGCTTGACTATCTTATTTCTCTCTGATTTAAGTAGTAGGTCCCTC
CTATGGAAACCAGAGCATCACTAAGGAAAACTGTGGGAGTCAAGCATCATGCAAGGGACGGGAA
GCAGCAACAGACCCCTGCCCCTCACATTCCGCCATCAGAATCAGAGGTGGGCCCTGCTGAGTGA
CTGGCGTTGCTTGTCATGGGAATTGAAAGTCTCTTAATCACGGGGCTCTTCCGTCTGAAGCTGG
AGTCTTCCAGCTTGTTGGGACTTTGAGTCTAGGCACCCTGAGTGTATCGCTCTAGTTGAAGAAA
TAACGATCCAAGAGTCAAGCGGTCCAGGATTCCGTCCGCAGCCGCCATTTGCTGAGTACCTGAT
GGTACCTCCTTTTCCTCGCTTCTATCTTCCGGTCTTTGCCTAGAGCTGCTTGTTCTCTGTTGGC
TCATCTGAGGGGCAGATTGCCCATCCCTCAGGAACAGTAAGCAGTCGGGGTGAAGGTTGGGGCA
GGAGAGTCACTGCCTGCTAGAAGGAGCTTTAACCACCAACCTTTTGATCTTGTCTGTCACCCTA
ACCCTGAGTGAAATGAAGCTATTGTGTTGCTCTCCTGTTAGATTCAGTAGGCTGCTGTGATCAT
GGTAGGGCTCAGTTATGGATGCAGACCTGGGGAGACAGTCTTTCACTTCAGTCTTCAGGAACGG
TCATCGTGCTAAAGACCACTCTCCTTGTTCACCAAGCAAGGTGAAGCCTACAGTCCCCGCAGTC
TTGAACCAGAAGGCAGGAGTGAGCAGTTGACCCCTTCCTGTAGACTGAAAGGGATGGCGTTAGA
GGGAAGAAGGGGGTTAGTGGTTCTGACATAAACTGCATATGCAATAACTTCTTGTGGCTATGGA
TAAACCTGGCCCTTTGTAGAGATCCTGGCCTGCTTGCTGGATCCTGGTGCCCACCCTACCCCAC
CACTGCCAAAGTCTAACAGACTATGCATGGAGCGGGAAAGAGAGAGGAAAGCTGGTAGGAATGG
GGCAATGCTCAGCTCTCACCAATGTCTGGGTCAAAATGAGGAAGATGAGCTCGACTAACAAGAT
TCTGGGTGACACAAGGCTTGTCAACCTGTGTCTTGCCCCCTTGTGCTCTGTCAGGAGCCACAGC
TCCTGGGCTCCTTAAGGTGGAATTGGGTGACCGGTGAATACTTGGCCCCCTACATAGCAATGTT
AGGCAATCGGGATTTATAGAAACTCATGTTAAAGCCAAAGACCGTGTTTGGACATGTAAAGTCT
GCTGGCTTAGTCACTGCCTCATCCTGCTGTGTGAGCAGTTCTGTCCCTATGGGTGAATTACATG
ACATCCCAAGGCCACTGCAGGCTCAAGACACCTGATTTCTCTGCTATTCCATTTCTGTGGAATC
TAAGCCCAAGCTCTATCTATACCCATCGAGCCTAGCACTGATGGTAGAACCCTGGGGACACAGA
CCTCAAGACTCCACTGGCAATGTATTGACTGTTATGAAAGGACTCTAAAGCTGTCACCTAAAAC
ACAACATTCCCTTCTCCCTGTGATTTTTTTCCCCCTCCTCTCCTGAAGACAGTGCATTCTGACC
AGCGCTGTCTAACCTTCCTCAGCTTGCTGCTGACACCACCCGTGTGGGGCTGTAGAGAGGGCTG
AGGTCTGTGGCTTGTTATATGGATTTGAGAGGAGGGTGCAGCATTTAGCTTTCCTGCATCACTG
TGAGGGAGCCGCAGGTTCCTTTCCCAGAGGAAAATAATCGTTGCCCAGAAGACAGAGGCCATAC
TAGGAAGTCCTGGTGCAAACCTGCTCTCAACGAAAGTAATAATTTTGTATGCACAGAACTCCCT
TACCAGTCCTAGTACCACATCTTAGGTTTTTAACGTCCACAACCACTGGCCTTTGTGAACTAGT
GGCCGGGATCTTCCGTTGGTTTCAGGAGCAGTCCATCATCCCTGGGAACACCAGGACTGGAGGG
AGCAGGGGGCGGCGGGCAGAGGGGAGCATTCAGTTTGCTGACACCATCAAATACATAGGCTTCT
TAGCAAAGATGATGCACAAGGCCGTGCTGCCTCCACTTTTAACTGCTGACCCCAGTCCTTCCTG
GGGTTCCTATCTCCATCCTGACGCTGGTTGAATCTTCTCTACCAAAATCCTCCTCGTAAAAGGA
TCCATGATGACAACTAAGAGGAAAAGAAGTATTTTTGTTAGGATGAACCATCATAGATTTTTAG
CGATGTGTATCTGTGTGTCCTTTACGCCTTTTCCTATTCTGACATTTTTTCCCCTTTTTTTTTA
AAAAAAAAATATTGTGTACTATATTTTTAGTCTCAAACACACACTATATATTATATATTTAATT
TTATATATATATAAATATAAATGTTTTAAAAAGTA

hide sequence

RefSeq Acc Id:

XM_006232676 ⟹ XP_006232738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	174,819,564 - 174,912,998 (-)	NCBI
mRatBN7.2	2	172,521,644 - 172,615,057 (-)	NCBI
Rnor_6.0	2	186,420,743 - 186,515,209 (-)	NCBI
Rnor_5.0	2	205,825,636 - 205,919,683 (-)	NCBI

Sequence:

show sequence

GCCGGGGAGGGAAGAGAGGGAGAGAGAGAGAGCGGCGCGGAGGTTGAGAGAGGCCCGGAGAGAT
AAAGCCGGAGGGCAGAAATTATTAGGGGGCGCGGGACGAGAGGAGGGGCCAGGGGAGCGAGCCC
GCGGCTAGAGAGGCAAGCGAGTGTGCGCCTTGTGTGCAAGGGCGGGAGGGAGAAGAGAGAGCCA
GCGGCGGCCCGGCTTGCGCCGACTCGGGCCCAGCGGCGGGCGGACAGCATGCTGAGCTTCCTCA
TCTGGATCCCCACTCTCTTCAACACTTTCTCACAAGGGCTTTAGGAATGACTCTGGAGAACCGT
AGCACATGTCTAATGACCTGCCAATCAAGCCTGCTCCCCAAGAAGCCCAGGTTTCTGAGTCAGA
AGATGTGGGCTCCACACTTAGTCGTTGCTTATCTTATCTTTGTGACTTTGGCTTTGGCGTTGCC
TGGGACCCAGACTCGCTTCAGCCAGGAGCCAGCTGATCAGACCGTGGTAGCCGGACACCGGGCA
GTGCTCCCGTGCGTGCTCCTCAACTACTCTGGGATCGTACAATGGACCAAGGACGGGCTGGCTC
TGGGTATGGGCCAGGGCCTCAAAGCCTGGCCACGGTACCGAGTCGTGGGCTCTGCGGATGCTGG
GCAATACAACTTGGAGATCACGGATGCCGAGCTGTCTGATGACGCTTCCTATGAGTGCCAGGCC
ACGGAGGCTGCCCTGCGCTCTCGGCGGGCCAAACTCACCGTGCTCATTCCTCCAGAGGACACAA
GGATTGATGGGGGCCCGGTGATTCTGCTGCAAGCAGGCACCCCCTACAACCTCACATGCCGAGC
ATTTAATGCCAAGCCTGCTGCCACCATCATTTGGTTCCGGGATGGGACACAGCAGGAGGGGGCT
GTGACTAGCACGGAGCTGCTGAAGGATGGGAAAAGGGAGACTACAATCAGCCAGCTACTCATTC
AGCCCACAGACCTAGACATCGGCCGCGTATTCACCTGTCGCAGCATGAATGAGGCCATCCCCAA
TGGCAAGGAGACGTCCATTGAGCTGGATGTACACCACCCTCCTACAGTGACTCTGTCCATTGAG
CCCCAGACAGTGCTGGAGGGCGAGCGCGTCATCTTTACGTGCCAGGCCACAGCCAACCCGGAGA
TCCTGGGCTACAGGTGGGCCAAAGGGGGGTTCCTGATTGAAGACGCCCATGAGAGTCGCTATGA
GACAAATGTTGATTATTCCTTCTTCACGGAGCCCGTGTCTTGTGAGGTTTATAACAAAGTCGGG
AGCACCAATGTCAGCACTTTAGTGAACGTTCACTTTGCCCCCCGGATTGTAGTTTACCCAAAGC
CCACAACCACAGACATTGGATCTGATGTGACCCTCACTTGTGTCTGGGTTGGGAATCCCCCCCT
CACCCTCACCTGGACCAAGAAGGATTCAAACATGGGGCCCAGGCTTCCTGGCTCCCCACCCGAG
GCTAATCTCTCTGCCCAGGTCCTGAGTAACAGCAATCAACTGTTGCTGAAGTCAGTGACCCAGG
CAGATGCTGGCACCTATACCTGCCGTGCCATAGTGCCTCGAATCGGAGTGGCTGAGCGAGAGGT
ACCCCTTTATGTGAATGGACCCCCTATCATCTCCAGCGAGGCGGTGCAGTTTGCTGTGAGAGGG
GATGGCGGTAAGGTGGAGTGCTTCATCGGGAGTACCCCCCCTCCGGATCGAATTGCATGGGCTT
GGAAGGAGAACTTCCTAGAGGTGGGGACACTGGAACGATACACTGTGGAGAGGACAAACTCAGG
CAGTGGTGTGCTGTCCACTCTCACCATCAATAACGTCATGGAGGCCGACTTCCAGACCCACTAC
AACTGCACTGCCTGGAACAGCTTTGGACCAGGCACAGCCATCATCCAGCTGGAGGAGCGAGAGG
TGTTACCTGTGGGCATCATCGCTGGGGCCACCATCGGTGCTGGCATCCTGCTCGTCTTCTCTTT
TGCTGCCTTAGTGTTCTTTCTCTACCGACGTCGCAAAGGCAGTCGAAAGGATGTGACGTTGAGG
AAGCTGGACATCAAGGTAGAGACAGTGAATCGGGAGCCACTTACAATGCACTCTGACCGGGAGG
ATGATACCACCAGCATTTCCACGGCAACTCGGGTCATGAAAGCCATCTACTCGTCCTTTAAGGA
TGATGTGGATCTGAAACAGGACCTGCACTGTGACACCATCGAGACCCGGGAAGAGTATGAGATG
AAGGATCCAACCAATGGTTATTACAACGTGCGTGCCCACGAAGATCGCCCATCTTCCAGGGCGG
TGCTATATGCTGACTACCGTGCCCCTGGCCCTACTCGTTTTGATGGGCGCCCATCATCCCGCCT
CTCCCACTCCAGTGGTTATGCCCAGCTGAATACATACAGCCGAGCCCCCGCCTCTGACTATGGC
ACAGAGCCGACACCCTCTGGCCCTTCTGCTCCAGGTGGCACCGATACAACCAGCCAGCTGTCCT
ACGAGAACTATGAGAAGTTCAACTCCCACCCCTTTCCCGGGGCAGCTGGGTATCCTACCTACCG
TCTAGGCTACCCCCAGGCCCCACCCTCTGGCCTGGAGAGGACCCCCTATGAAGCCTATGACCCT
ATTGGCAAGTATGCCACCGCCACTCGGTTCTCCTACACCTCTCAACACTCAGACTACGGCCAGC
GATTCCAGCAGCGCATGCAGACTCACGTGTAGAGGCTGGAGTCTGGCTGGGGTATCTCTGCGGG
GCAGAGGAGATGGCTTCCCAGCATTCCCTGACATTCAGGGACATTGCTCGTTGCTCCTTTCGTG
GACCCAGCCTTTCTCCTCCTGGCCATCACAAATAAGGAGCAGGTCTCCCAGTAACACCCCATCC
CAAGGATGGTGCTCTGCGCATGCCCCAGTCTCCCGGGCCAGCCCTTTCCTCTTCTTCAGGAGGA
TATCTCTTCTGACCTTTGTTCTGCCTGACCCAAGCATGGGGAAAGGAGAGGGGAGGTTGGGGGA
GGGGAGGAGAGAGGAGAGGAGCACAGTCTGTCATTTCCTTCTGTCCTGCTTCTCTGAGCTCCCG
TAGGTGGTCATGGAGATATGCCGAGGTGGGCAGGCCGCTGGAACGTAGGAGAGCGCACCAGTCC
CGGTCTTGATTTCTTGATACCTTGTGTTCATCTTTCCCATCTCAGGGGATTACAGATGAAACAA
TGAGTTCAAATCCAGCCCTTGGTCAGCTGGGGTCAAAATACCAGTCACTCTGGCTGCTACTGTG
GCTCTCTGTCTGAGTGAAGAGGGCTTCAAAAAATCCCCAAGATCACTGATTCCTTTCTTCTCAG
CTTTGTGCTGGACCAGCCAAGATGTGTCCTGGATGTGAGCAAGTCGCGGTCAGGACTAAGTCCT
GGTTGACAGGCAAGGGTCCACTGTGTAGTGCATGGCAGTTTCCAGGTCCAGCACTAGTGGGAGC
CACGCAAGTTTCCTTCTTCTAAACGGTATTGGGCCCCACTTCTTGGTGTTGACTCTTGAGCCTT
GGTAGAGCAGAGGCTACTTTTCATGGGGCTGTCTTTCAAAAGCAATAAAACCTCCTTTGGAATG
AGAAGTTGTAGGGTTTCCCCGCTATACGCAAGTCCCTATGGAAAGGAAAGGGGCGCCCGCCCTC
CAGCAGGCTCCTAACACCTCGTATTGCTCTAGCTGAGTCTCTGAGCACTTTGATTCTAGTACAT
ACGATCTGGATGGTGAGACCTGCCTTCTGGTGGATTCTGATAGAGCGCAGCAGTGTCCCGAGCC
TCAGGCTCTACTATCCTACCTGGTCTAACTACTCACCGTAGCTAGAAACTGCCTTGCAGATGGC
GTGGTAGGGGCTTTATCCAGACAAATTTTGGTTTCGTCTCCTCCTCACCGGCCCCCATCCCACC
CAATCAGATTCCTTCTTTCATTTTCAGTGCCTTGAGTGTCAGGTTTGTGATGATGTCCCTGTGT
GGGGAGCAGGGACCTTGTGAATCTCAGCTTGTCCCATGTTAGCATCCAGGGAGACACAAATGAA
GAGGATGGAAGGGAAAGGGGGCCGGGAAATGGCTGCCGGAAAATTCTTACCGGCCTAGATGGTG
ATCCTAGTGCAGAAGAACACACCAGGCACTGAATTCCATAGGCCATGTTGTCTTTCCCACACAT
TCTGCACACATGAGTGCCCACACATTCCATGCCACGTCTCATCTACCACCTTCTGACCAAAGAG
AACCTGTAACTAGTGTTTCAGCCTCACCTTCCCAAGAAACCAACTGCCCAACAGGATTCTTCCA
TCCACAGTCCCGATGAGGCCTGCCTGACAGGAGGAAGTATTCCCAGAATACTCCTGGCTTCTTC
TCATTGGTCACCATTCGTTAGTCATGTTTACTTTAATGAGTTACCTGTTCATCAGGCCCGTTCC
ATCACTAACCCTCTAGATGGGTCTGTAGGGTGACATTCCCTGCCATCTCCTTTCCGATAAGGAC
CAGGTAATGTCCAGGAATCAAGGAGAGCCGTTTGCAGCCTGGCTGGCAGGCAGGCAGCTGCTGC
GTCCTCTTCTCCAGTGAGTGCGTCCACACAGAGCGGCCCTTCCTGCAGCAGTGACAGACTCATA
GCTGTATTCCGGTTCAGAAGACTCTCGCTTTCACGAGAGCTCAGGGAGGCAGTGTAGGTTCTAG
TGAGTATGGATTTGTGCAGGTTTTCAGTTTCACTCGCACCCGAAGCCGTGGGCGATCAAACATC
CTGTATAGACTTTTGAAGTCTAAATAGAGTGACATTTTAAACAGCAATACTCCCTAAAGTAGTC
ATCTTGTTTGGGGTTTGGCTTGACTATCTTATTTCTCTCTGATTTAAGTAGTAGGTCCCTCCTA
TGGAAACCAGAGCATCACTAAGGAAAACTGTGGGAGTCAAGCATCATGCAAGGGACGGGAAGCA
GCAACAGACCCCTGCCCCTCACATTCCGCCATCAGAATCAGAGGTGGGCCCTGCTGAGTGACTG
GCGTTGCTTGTCATGGGAATTGAAAGTCTCTTAATCACGGGGCTCTTCCGTCTGAAGCTGGAGT
CTTCCAGCTTGTTGGGACTTTGAGTCTAGGCACCCTGAGTGTATCGCTCTAGTTGAAGAAATAA
CGATCCAAGAGTCAAGCGGTCCAGGATTCCGTCCGCAGCCGCCATTTGCTGAGTACCTGATGGT
ACCTCCTTTTCCTCGCTTCTATCTTCCGGTCTTTGCCTAGAGCTGCTTGTTCTCTGTTGGCTCA
TCTGAGGGGCAGATTGCCCATCCCTCAGGAACAGTAAGCAGTCGGGGTGAAGGTTGGGGCAGGA
GAGTCACTGCCTGCTAGAAGGAGCTTTAACCACCAACCTTTTGATCTTGTCTGTCACCCTAACC
CTGAGTGAAATGAAGCTATTGTGTTGCTCTCCTGTTAGATTCAGTAGGCTGCTGTGATCATGGT
AGGGCTCAGTTATGGATGCAGACCTGGGGAGACAGTCTTTCACTTCAGTCTTCAGGAACGGTCA
TCGTGCTAAAGACCACTCTCCTTGTTCACCAAGCAAGGTGAAGCCTACAGTCCCCGCAGTCTTG
AACCAGAAGGCAGGAGTGAGCAGTTGACCCCTTCCTGTAGACTGAAAGGGATGGCGTTAGAGGG
AAGAAGGGGGTTAGTGGTTCTGACATAAACTGCATATGCAATAACTTCTTGTGGCTATGGATAA
ACCTGGCCCTTTGTAGAGATCCTGGCCTGCTTGCTGGATCCTGGTGCCCACCCTACCCCACCAC
TGCCAAAGTCTAACAGACTATGCATGGAGCGGGAAAGAGAGAGGAAAGCTGGTAGGAATGGGGC
AATGCTCAGCTCTCACCAATGTCTGGGTCAAAATGAGGAAGATGAGCTCGACTAACAAGATTCT
GGGTGACACAAGGCTTGTCAACCTGTGTCTTGCCCCCTTGTGCTCTGTCAGGAGCCACAGCTCC
TGGGCTCCTTAAGGTGGAATTGGGTGACCGGTGAATACTTGGCCCCCTACATAGCAATGTTAGG
CAATCGGGATTTATAGAAACTCATGTTAAAGCCAAAGACCGTGTTTGGACATGTAAAGTCTGCT
GGCTTAGTCACTGCCTCATCCTGCTGTGTGAGCAGTTCTGTCCCTATGGGTGAATTACATGACA
TCCCAAGGCCACTGCAGGCTCAAGACACCTGATTTCTCTGCTATTCCATTTCTGTGGAATCTAA
GCCCAAGCTCTATCTATACCCATCGAGCCTAGCACTGATGGTAGAACCCTGGGGACACAGACCT
CAAGACTCCACTGGCAATGTATTGACTGTTATGAAAGGACTCTAAAGCTGTCACCTAAAACACA
ACATTCCCTTCTCCCTGTGATTTTTTTCCCCCTCCTCTCCTGAAGACAGTGCATTCTGACCAGC
GCTGTCTAACCTTCCTCAGCTTGCTGCTGACACCACCCGTGTGGGGCTGTAGAGAGGGCTGAGG
TCTGTGGCTTGTTATATGGATTTGAGAGGAGGGTGCAGCATTTAGCTTTCCTGCATCACTGTGA
GGGAGCCGCAGGTTCCTTTCCCAGAGGAAAATAATCGTTGCCCAGAAGACAGAGGCCATACTAG
GAAGTCCTGGTGCAAACCTGCTCTCAACGAAAGTAATAATTTTGTATGCACAGAACTCCCTTAC
CAGTCCTAGTACCACATCTTAGGTTTTTAACGTCCACAACCACTGGCCTTTGTGAACTAGTGGC
CGGGATCTTCCGTTGGTTTCAGGAGCAGTCCATCATCCCTGGGAACACCAGGACTGGAGGGAGC
AGGGGGCGGCGGGCAGAGGGGAGCATTCAGTTTGCTGACACCATCAAATACATAGGCTTCTTAG
CAAAGATGATGCACAAGGCCGTGCTGCCTCCACTTTTAACTGCTGACCCCAGTCCTTCCTGGGG
TTCCTATCTCCATCCTGACGCTGGTTGAATCTTCTCTACCAAAATCCTCCTCGTAAAAGGATCC
ATGATGACAACTAAGAGGAAAAGAAGTATTTTTGTTAGGATGAACCATCATAGATTTTTAGCGA
TGTGTATCTGTGTGTCCTTTACGCCTTTTCCTATTCTGACATTTTTTCCCCTTTTTTTTTAAAA
AAAAAATATTGTGTACTATATTTTTAGTCTCAAACACACACTATATATTATATATTTAATTTTA
TATATATATAAATATAAATGTTTTAAAAAGTA

hide sequence

RefSeq Acc Id:

XM_006232678 ⟹ XP_006232740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	174,819,564 - 174,912,998 (-)	NCBI
mRatBN7.2	2	172,521,644 - 172,615,057 (-)	NCBI
Rnor_6.0	2	186,420,743 - 186,515,208 (-)	NCBI
Rnor_5.0	2	205,825,636 - 205,919,683 (-)	NCBI

Sequence:

show sequence

CCGGGGAGGGAAGAGAGGGAGAGAGAGAGAGCGGCGCGGAGGTTGAGAGAGGCCCGGAGAGATA
AAGCCGGAGGGCAGAAATTATTAGGGGGCGCGGGACGAGAGGAGGGGCCAGGGGAGCGAGCCCG
CGGCTAGAGAGGCAAGCGAGTGTGCGCCTTGTGTGCAAGGGCGGGAGGGAGAAGAGAGAGCCAG
CGGCGGCCCGGCTTGCGCCGACTCGGGCCCAGCGGCGGGCGGACAGCATGCTGAGCTTCCTCAT
CTGGATCCCCACTCTCTTCAACACTTTCTCACAAGCTTTGGCGTTGCCTGGGACCCAGACTCGC
TTCAGCCAGGAGCCAGCTGATCAGACCGTGGTAGCCGGACACCGGGCAGTGCTCCCGTGCGTGC
TCCTCAACTACTCTGGGATCGTACAATGGACCAAGGACGGGCTGGCTCTGGGTATGGGCCAGGG
CCTCAAAGCCTGGCCACGGTACCGAGTCGTGGGCTCTGCGGATGCTGGGCAATACAACTTGGAG
ATCACGGATGCCGAGCTGTCTGATGACGCTTCCTATGAGTGCCAGGCCACGGAGGCTGCCCTGC
GCTCTCGGCGGGCCAAACTCACCGTGCTCATTCCTCCAGAGGACACAAGGATTGATGGGGGCCC
GGTGATTCTGCTGCAAGCAGGCACCCCCTACAACCTCACATGCCGAGCATTTAATGCCAAGCCT
GCTGCCACCATCATTTGGTTCCGGGATGGGACACAGCAGGAGGGGGCTGTGACTAGCACGGAGC
TGCTGAAGGATGGGAAAAGGGAGACTACAATCAGCCAGCTACTCATTCAGCCCACAGACCTAGA
CATCGGCCGCGTATTCACCTGTCGCAGCATGAATGAGGCCATCCCCAATGGCAAGGAGACGTCC
ATTGAGCTGGATGTACACCACCCTCCTACAGTGACTCTGTCCATTGAGCCCCAGACAGTGCTGG
AGGGCGAGCGCGTCATCTTTACGTGCCAGGCCACAGCCAACCCGGAGATCCTGGGCTACAGGTG
GGCCAAAGGGGGGTTCCTGATTGAAGACGCCCATGAGAGTCGCTATGAGACAAATGTTGATTAT
TCCTTCTTCACGGAGCCCGTGTCTTGTGAGGTTTATAACAAAGTCGGGAGCACCAATGTCAGCA
CTTTAGTGAACGTTCACTTTGCCCCCCGGATTGTAGTTTACCCAAAGCCCACAACCACAGACAT
TGGATCTGATGTGACCCTCACTTGTGTCTGGGTTGGGAATCCCCCCCTCACCCTCACCTGGACC
AAGAAGGATTCAAACATGGGGCCCAGGCTTCCTGGCTCCCCACCCGAGGCTAATCTCTCTGCCC
AGGTCCTGAGTAACAGCAATCAACTGTTGCTGAAGTCAGTGACCCAGGCAGATGCTGGCACCTA
TACCTGCCGTGCCATAGTGCCTCGAATCGGAGTGGCTGAGCGAGAGGTACCCCTTTATGTGAAT
GGACCCCCTATCATCTCCAGCGAGGCGGTGCAGTTTGCTGTGAGAGGGGATGGCGGTAAGGTGG
AGTGCTTCATCGGGAGTACCCCCCCTCCGGATCGAATTGCATGGGCTTGGAAGGAGAACTTCCT
AGAGGTGGGGACACTGGAACGATACACTGTGGAGAGGACAAACTCAGGCAGTGGTGTGCTGTCC
ACTCTCACCATCAATAACGTCATGGAGGCCGACTTCCAGACCCACTACAACTGCACTGCCTGGA
ACAGCTTTGGACCAGGCACAGCCATCATCCAGCTGGAGGAGCGAGAGGTGTTACCTGTGGGCAT
CATCGCTGGGGCCACCATCGGTGCTGGCATCCTGCTCGTCTTCTCTTTTGCTGCCTTAGTGTTC
TTTCTCTACCGACGTCGCAAAGGCAGTCGAAAGGATGTGACGTTGAGGAAGCTGGACATCAAGG
TAGAGACAGTGAATCGGGAGCCACTTACAATGCACTCTGACCGGGAGGATGATACCACCAGCAT
TTCCACGGCAACTCGGGTCATGAAAGCCATCTACTCGTCCTTTAAGGATGATGTGGATCTGAAA
CAGGACCTGCACTGTGACACCATCGAGACCCGGGAAGAGTATGAGATGAAGGATCCAACCAATG
GTTATTACAACGTGCGTGCCCACGAAGATCGCCCATCTTCCAGGGCGGTGCTATATGCTGACTA
CCGTGCCCCTGGCCCTACTCGTTTTGATGGGCGCCCATCATCCCGCCTCTCCCACTCCAGTGGT
TATGCCCAGCTGAATACATACAGCCGAGCCCCCGCCTCTGACTATGGCACAGAGCCGACACCCT
CTGGCCCTTCTGCTCCAGGTGGCACCGATACAACCAGCCAGCTGTCCTACGAGAACTATGAGAA
GTTCAACTCCCACCCCTTTCCCGGGGCAGCTGGGTATCCTACCTACCGTCTAGGCTACCCCCAG
GCCCCACCCTCTGGCCTGGAGAGGACCCCCTATGAAGCCTATGACCCTATTGGCAAGTATGCCA
CCGCCACTCGGTTCTCCTACACCTCTCAACACTCAGACTACGGCCAGCGATTCCAGCAGCGCAT
GCAGACTCACGTGTAGAGGCTGGAGTCTGGCTGGGGTATCTCTGCGGGGCAGAGGAGATGGCTT
CCCAGCATTCCCTGACATTCAGGGACATTGCTCGTTGCTCCTTTCGTGGACCCAGCCTTTCTCC
TCCTGGCCATCACAAATAAGGAGCAGGTCTCCCAGTAACACCCCATCCCAAGGATGGTGCTCTG
CGCATGCCCCAGTCTCCCGGGCCAGCCCTTTCCTCTTCTTCAGGAGGATATCTCTTCTGACCTT
TGTTCTGCCTGACCCAAGCATGGGGAAAGGAGAGGGGAGGTTGGGGGAGGGGAGGAGAGAGGAG
AGGAGCACAGTCTGTCATTTCCTTCTGTCCTGCTTCTCTGAGCTCCCGTAGGTGGTCATGGAGA
TATGCCGAGGTGGGCAGGCCGCTGGAACGTAGGAGAGCGCACCAGTCCCGGTCTTGATTTCTTG
ATACCTTGTGTTCATCTTTCCCATCTCAGGGGATTACAGATGAAACAATGAGTTCAAATCCAGC
CCTTGGTCAGCTGGGGTCAAAATACCAGTCACTCTGGCTGCTACTGTGGCTCTCTGTCTGAGTG
AAGAGGGCTTCAAAAAATCCCCAAGATCACTGATTCCTTTCTTCTCAGCTTTGTGCTGGACCAG
CCAAGATGTGTCCTGGATGTGAGCAAGTCGCGGTCAGGACTAAGTCCTGGTTGACAGGCAAGGG
TCCACTGTGTAGTGCATGGCAGTTTCCAGGTCCAGCACTAGTGGGAGCCACGCAAGTTTCCTTC
TTCTAAACGGTATTGGGCCCCACTTCTTGGTGTTGACTCTTGAGCCTTGGTAGAGCAGAGGCTA
CTTTTCATGGGGCTGTCTTTCAAAAGCAATAAAACCTCCTTTGGAATGAGAAGTTGTAGGGTTT
CCCCGCTATACGCAAGTCCCTATGGAAAGGAAAGGGGCGCCCGCCCTCCAGCAGGCTCCTAACA
CCTCGTATTGCTCTAGCTGAGTCTCTGAGCACTTTGATTCTAGTACATACGATCTGGATGGTGA
GACCTGCCTTCTGGTGGATTCTGATAGAGCGCAGCAGTGTCCCGAGCCTCAGGCTCTACTATCC
TACCTGGTCTAACTACTCACCGTAGCTAGAAACTGCCTTGCAGATGGCGTGGTAGGGGCTTTAT
CCAGACAAATTTTGGTTTCGTCTCCTCCTCACCGGCCCCCATCCCACCCAATCAGATTCCTTCT
TTCATTTTCAGTGCCTTGAGTGTCAGGTTTGTGATGATGTCCCTGTGTGGGGAGCAGGGACCTT
GTGAATCTCAGCTTGTCCCATGTTAGCATCCAGGGAGACACAAATGAAGAGGATGGAAGGGAAA
GGGGGCCGGGAAATGGCTGCCGGAAAATTCTTACCGGCCTAGATGGTGATCCTAGTGCAGAAGA
ACACACCAGGCACTGAATTCCATAGGCCATGTTGTCTTTCCCACACATTCTGCACACATGAGTG
CCCACACATTCCATGCCACGTCTCATCTACCACCTTCTGACCAAAGAGAACCTGTAACTAGTGT
TTCAGCCTCACCTTCCCAAGAAACCAACTGCCCAACAGGATTCTTCCATCCACAGTCCCGATGA
GGCCTGCCTGACAGGAGGAAGTATTCCCAGAATACTCCTGGCTTCTTCTCATTGGTCACCATTC
GTTAGTCATGTTTACTTTAATGAGTTACCTGTTCATCAGGCCCGTTCCATCACTAACCCTCTAG
ATGGGTCTGTAGGGTGACATTCCCTGCCATCTCCTTTCCGATAAGGACCAGGTAATGTCCAGGA
ATCAAGGAGAGCCGTTTGCAGCCTGGCTGGCAGGCAGGCAGCTGCTGCGTCCTCTTCTCCAGTG
AGTGCGTCCACACAGAGCGGCCCTTCCTGCAGCAGTGACAGACTCATAGCTGTATTCCGGTTCA
GAAGACTCTCGCTTTCACGAGAGCTCAGGGAGGCAGTGTAGGTTCTAGTGAGTATGGATTTGTG
CAGGTTTTCAGTTTCACTCGCACCCGAAGCCGTGGGCGATCAAACATCCTGTATAGACTTTTGA
AGTCTAAATAGAGTGACATTTTAAACAGCAATACTCCCTAAAGTAGTCATCTTGTTTGGGGTTT
GGCTTGACTATCTTATTTCTCTCTGATTTAAGTAGTAGGTCCCTCCTATGGAAACCAGAGCATC
ACTAAGGAAAACTGTGGGAGTCAAGCATCATGCAAGGGACGGGAAGCAGCAACAGACCCCTGCC
CCTCACATTCCGCCATCAGAATCAGAGGTGGGCCCTGCTGAGTGACTGGCGTTGCTTGTCATGG
GAATTGAAAGTCTCTTAATCACGGGGCTCTTCCGTCTGAAGCTGGAGTCTTCCAGCTTGTTGGG
ACTTTGAGTCTAGGCACCCTGAGTGTATCGCTCTAGTTGAAGAAATAACGATCCAAGAGTCAAG
CGGTCCAGGATTCCGTCCGCAGCCGCCATTTGCTGAGTACCTGATGGTACCTCCTTTTCCTCGC
TTCTATCTTCCGGTCTTTGCCTAGAGCTGCTTGTTCTCTGTTGGCTCATCTGAGGGGCAGATTG
CCCATCCCTCAGGAACAGTAAGCAGTCGGGGTGAAGGTTGGGGCAGGAGAGTCACTGCCTGCTA
GAAGGAGCTTTAACCACCAACCTTTTGATCTTGTCTGTCACCCTAACCCTGAGTGAAATGAAGC
TATTGTGTTGCTCTCCTGTTAGATTCAGTAGGCTGCTGTGATCATGGTAGGGCTCAGTTATGGA
TGCAGACCTGGGGAGACAGTCTTTCACTTCAGTCTTCAGGAACGGTCATCGTGCTAAAGACCAC
TCTCCTTGTTCACCAAGCAAGGTGAAGCCTACAGTCCCCGCAGTCTTGAACCAGAAGGCAGGAG
TGAGCAGTTGACCCCTTCCTGTAGACTGAAAGGGATGGCGTTAGAGGGAAGAAGGGGGTTAGTG
GTTCTGACATAAACTGCATATGCAATAACTTCTTGTGGCTATGGATAAACCTGGCCCTTTGTAG
AGATCCTGGCCTGCTTGCTGGATCCTGGTGCCCACCCTACCCCACCACTGCCAAAGTCTAACAG
ACTATGCATGGAGCGGGAAAGAGAGAGGAAAGCTGGTAGGAATGGGGCAATGCTCAGCTCTCAC
CAATGTCTGGGTCAAAATGAGGAAGATGAGCTCGACTAACAAGATTCTGGGTGACACAAGGCTT
GTCAACCTGTGTCTTGCCCCCTTGTGCTCTGTCAGGAGCCACAGCTCCTGGGCTCCTTAAGGTG
GAATTGGGTGACCGGTGAATACTTGGCCCCCTACATAGCAATGTTAGGCAATCGGGATTTATAG
AAACTCATGTTAAAGCCAAAGACCGTGTTTGGACATGTAAAGTCTGCTGGCTTAGTCACTGCCT
CATCCTGCTGTGTGAGCAGTTCTGTCCCTATGGGTGAATTACATGACATCCCAAGGCCACTGCA
GGCTCAAGACACCTGATTTCTCTGCTATTCCATTTCTGTGGAATCTAAGCCCAAGCTCTATCTA
TACCCATCGAGCCTAGCACTGATGGTAGAACCCTGGGGACACAGACCTCAAGACTCCACTGGCA
ATGTATTGACTGTTATGAAAGGACTCTAAAGCTGTCACCTAAAACACAACATTCCCTTCTCCCT
GTGATTTTTTTCCCCCTCCTCTCCTGAAGACAGTGCATTCTGACCAGCGCTGTCTAACCTTCCT
CAGCTTGCTGCTGACACCACCCGTGTGGGGCTGTAGAGAGGGCTGAGGTCTGTGGCTTGTTATA
TGGATTTGAGAGGAGGGTGCAGCATTTAGCTTTCCTGCATCACTGTGAGGGAGCCGCAGGTTCC
TTTCCCAGAGGAAAATAATCGTTGCCCAGAAGACAGAGGCCATACTAGGAAGTCCTGGTGCAAA
CCTGCTCTCAACGAAAGTAATAATTTTGTATGCACAGAACTCCCTTACCAGTCCTAGTACCACA
TCTTAGGTTTTTAACGTCCACAACCACTGGCCTTTGTGAACTAGTGGCCGGGATCTTCCGTTGG
TTTCAGGAGCAGTCCATCATCCCTGGGAACACCAGGACTGGAGGGAGCAGGGGGCGGCGGGCAG
AGGGGAGCATTCAGTTTGCTGACACCATCAAATACATAGGCTTCTTAGCAAAGATGATGCACAA
GGCCGTGCTGCCTCCACTTTTAACTGCTGACCCCAGTCCTTCCTGGGGTTCCTATCTCCATCCT
GACGCTGGTTGAATCTTCTCTACCAAAATCCTCCTCGTAAAAGGATCCATGATGACAACTAAGA
GGAAAAGAAGTATTTTTGTTAGGATGAACCATCATAGATTTTTAGCGATGTGTATCTGTGTGTC
CTTTACGCCTTTTCCTATTCTGACATTTTTTCCCCTTTTTTTTTAAAAAAAAAATATTGTGTAC
TATATTTTTAGTCTCAAACACACACTATATATTATATATTTAATTTTATATATATATAAATATA
AATGTTTTAAAAAGTA

hide sequence

RefSeq Acc Id:

XM_063281893 ⟹ XP_063137963

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	174,819,564 - 174,887,415 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_997489	(Get FASTA)	NCBI Sequence Viewer
	XP_006232737	(Get FASTA)	NCBI Sequence Viewer
	XP_006232738	(Get FASTA)	NCBI Sequence Viewer
	XP_006232740	(Get FASTA)	NCBI Sequence Viewer
	XP_063137963	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAP12626	(Get FASTA)	NCBI Sequence Viewer
	AAP78673	(Get FASTA)	NCBI Sequence Viewer
	EDM00788	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033900
	ENSRNOP00000033900.1
	ENSRNOP00000100429
GenBank Protein	Q6X936	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_997489 ⟸ NM_207606
- Peptide Label:	precursor
- UniProtKB:	Q6X936 (UniProtKB/Swiss-Prot), F1M7V1 (UniProtKB/Swiss-Prot), Q80W67 (UniProtKB/Swiss-Prot), A0A0G2JXH3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLENRSTCLMTCQSSLLPKKPRFLSQKMWAPHLVVAYLIFVTLALALPGTQTRFSQEPADQTV VAGHRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDA SYECQATEAALRSRRAKLTVLIPPEDTRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDG TQQEGAVTSTELLKDGKRETTISQLLIQPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPT VTLSIEPQTVLEGERVIFTCQATANPEILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCE VDSKVGSTNVSTVVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMVLSN SNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQFAVRGDGGKVECFIG STPPPDRIAWAWKENFLEVGTLERYTVERTNSGSGVLSTLTINNVMEADFQTHYNCTAWNSFGP GTAIIQLEEREVLPVGIIAGATIGAGILLVFSFAALVFFLYRRRKGSRKDVTLRKLDIKVETVN REPLTMHSDREDDTTSISTATRVMKAIYSSFKDDVDLKQDLHCDTIETREEYEMKDPTNGYYNV RAHEDRPSSRAVLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRAPASDYGTEPTPSGPSA PGGTDTTSQLSYENYEKFNSHPFPGAAGYPTYRLGYPQAPPSGLERTPYEAYDPIGKYATATRF SYTSQHSDYGQRFQQRMQTHV hide sequence

RefSeq Acc Id:	XP_006232740 ⟸ XM_006232678
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JXH3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSFLIWIPTLFNTFSQALALPGTQTRFSQEPADQTVVAGHRAVLPCVLLNYSGIVQWTKDGLA LGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQATEAALRSRRAKLTVLIPPEDT RIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTSTELLKDGKRETTISQLLI QPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPTVTLSIEPQTVLEGERVIFTCQATANPE ILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCEVYNKVGSTNVSTLVNVHFAPRIVVYPK PTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMGPRLPGSPPEANLSAQVLSNSNQLLLKSVTQ ADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQFAVRGDGGKVECFIGSTPPPDRIAWA WKENFLEVGTLERYTVERTNSGSGVLSTLTINNVMEADFQTHYNCTAWNSFGPGTAIIQLEERE VLPVGIIAGATIGAGILLVFSFAALVFFLYRRRKGSRKDVTLRKLDIKVETVNREPLTMHSDRE DDTTSISTATRVMKAIYSSFKDDVDLKQDLHCDTIETREEYEMKDPTNGYYNVRAHEDRPSSRA VLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRAPASDYGTEPTPSGPSAPGGTDTTSQLS YENYEKFNSHPFPGAAGYPTYRLGYPQAPPSGLERTPYEAYDPIGKYATATRFSYTSQHSDYGQ RFQQRMQTHV hide sequence

RefSeq Acc Id:	XP_006232738 ⟸ XM_006232676
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXH3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLENRSTCLMTCQSSLLPKKPRFLSQKMWAPHLVVAYLIFVTLALALPGTQTRFSQEPADQTV VAGHRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDA SYECQATEAALRSRRAKLTVLIPPEDTRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDG TQQEGAVTSTELLKDGKRETTISQLLIQPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPT VTLSIEPQTVLEGERVIFTCQATANPEILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCE VYNKVGSTNVSTLVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMGPRL PGSPPEANLSAQVLSNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAV QFAVRGDGGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTNSGSGVLSTLTINNVMEA DFQTHYNCTAWNSFGPGTAIIQLEEREVLPVGIIAGATIGAGILLVFSFAALVFFLYRRRKGSR KDVTLRKLDIKVETVNREPLTMHSDREDDTTSISTATRVMKAIYSSFKDDVDLKQDLHCDTIET REEYEMKDPTNGYYNVRAHEDRPSSRAVLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRA PASDYGTEPTPSGPSAPGGTDTTSQLSYENYEKFNSHPFPGAAGYPTYRLGYPQAPPSGLERTP YEAYDPIGKYATATRFSYTSQHSDYGQRFQQRMQTHV hide sequence

RefSeq Acc Id:	XP_006232737 ⟸ XM_006232675
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXH3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLENRSTCLMTCQSSLLPKKPRFLSQKMWAPHLVVAYLIFVTLALALPGTQTRFSQEPADQTV VAGHRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDA SYECQATEAALRSRRAKLTVLIPPEDTRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDG TQQEGAVTSTELLKDGKRETTISQLLIQPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPT VTLSIEPQTVLEGERVIFTCQATANPEILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCE VYNKVGSTNVSTLVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMGPRL PGSPPEANLSAQVLSNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAV QFAVRGDGGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTNSGSGVLSTLTINNVMEA DFQTHYNCTAWNSFGPGTAIIQLEEREVLPVGIIAGATIGAGILLVFSFAALVFFLYRRRKGSR KDVTLRKLDIKVETVNREPLTMHSDREDDTTSISTATRVMKAIYSSFKDDVDLKQDLHCDTIET REEYEMKDPTNGYYNVRAHEDRPSSRAVLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRA PASDYGTEPTPSGPSAPGGTDTTSQLSYENYEKFNSHPFPGAAGYPTYRLGYPQAPPSGLERTP YEAYDPIGKYATATRFSYTSQHSDYGQRFQQRMQTHV hide sequence

Ensembl Acc Id:

ENSRNOP00000033900 ⟸ ENSRNOT00000031743

Ensembl Acc Id:

ENSRNOP00000070270 ⟸ ENSRNOT00000077375

RefSeq Acc Id:	XP_063137963 ⟸ XM_063281893
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXH3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099971 ⟸ ENSRNOT00000145740

Ensembl Acc Id:

ENSRNOP00000100429 ⟸ ENSRNOT00000134383

Protein Domains

Ig-like Ig-like C2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6X936-F1-model_v2	AlphaFold	Q6X936	1-789	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691417

Promoter ID:

EPDNEW_R1938

Type:

initiation region

Name:

Kirrel1_1

Description:

kirre like nephrin family adhesion molecule 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	186,515,050 - 186,515,110	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727883	AgrOrtholog
BioCyc Gene	G2FUF-52558	BioCyc
Ensembl Genes	ENSRNOG00000016408	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000031743	ENTREZGENE
	ENSRNOT00000031743.2	UniProtKB/Swiss-Prot
	ENSRNOT00000134383	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
InterPro	CD80_C2-set	UniProtKB/Swiss-Prot
	Cell_adhesion_signaling	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_I-set	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
KEGG Report	rno:310695	UniProtKB/Swiss-Prot
NCBI Gene	310695	ENTREZGENE
PANTHER	KIN OF IRRE-LIKE PROTEIN 1	UniProtKB/Swiss-Prot
	NEPHRIN	UniProtKB/Swiss-Prot
Pfam	C2-set_2	UniProtKB/Swiss-Prot
	I-set	UniProtKB/Swiss-Prot
	Ig_3	UniProtKB/Swiss-Prot
PhenoGen	Kirrel1	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000016408	RatGTEx
SMART	IGc2	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
UniProt	A0A0G2JXH3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LB75_RAT	UniProtKB/TrEMBL
	A0ABK0LCA7_RAT	UniProtKB/TrEMBL
	A6J601_RAT	UniProtKB/TrEMBL
	F1M7V1	ENTREZGENE
	KIRR1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q80W67	ENTREZGENE
UniProt Secondary	F1M7V1	UniProtKB/Swiss-Prot
	Q80W67	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-06-21	Kirrel1	kirre like nephrin family adhesion molecule 1	Kirrel	kin of IRRE like (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-25	Kirrel	kin of IRRE like (Drosophila)	Kirrel1	kin of IRRE like 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Kirrel1	kin of IRRE like 1 (Drosophila)	Neph1	nephrin 1	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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