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Gene: Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3) Rattus norvegicus

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Symbol:

Hnrnpa3

Name:

heterogeneous nuclear ribonucleoprotein A3

RGD ID:

727807

Description:

Enables RNA transmembrane transporter activity and mRNA binding activity. Involved in mRNA transport. Located in ribonucleoprotein granule. Part of ribonucleoprotein complex. Is active in glutamatergic synapse and postsynaptic density. Biomarker of silicosis. Orthologous to human HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hnRNP A3; Hnrpa3; mBx

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)	RGD	RGD
Mus musculus (house mouse):	Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3)	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NOP13	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Saccharomyces cerevisiae (baker's yeast):	NSR1	Alliance	DIOPT (Ensembl Compara\|OMA)
Caenorhabditis elegans (roundworm):	hrp-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hrp-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Hrb87F	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Hrb87F	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Hrb98DE	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Hrb98DE	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hnrnpa3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hnrnpa3	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	80,984,470 - 80,999,413 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	80,985,969 - 80,996,043 (+)	Ensembl				GRCr8
mRatBN7.2	3	60,578,574 - 60,588,755 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	60,578,673 - 60,588,306 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	63,952,911 - 63,963,020 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	72,536,567 - 72,546,676 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	70,302,815 - 70,312,930 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	62,481,222 - 62,491,356 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	62,481,323 - 62,487,227 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	69,029,029 - 69,036,149 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	68,872,863 - 68,875,337 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	60,079,220 - 60,089,344 (+)	NCBI		Celera
Cytogenetic Map	3	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

schizophrenia (ISO)

silicosis (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

(Z)-3-butylidenephthalide (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

3',5'-cyclic UMP (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bleomycin A2 (EXP)

butan-1-ol (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

carnosic acid (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cytarabine (ISO)

DDE (ISO)

decabromodiphenyl ether (EXP,ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

diuron (EXP)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

eugenol (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fructose (EXP)

furfural (ISO)

gentamycin (EXP)

inulin (ISO)

irinotecan (ISO)

isobutanol (ISO)

ivermectin (ISO)

lead(0) (ISO)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP)

nickel subsulfide (EXP)

nicotine (ISO)

nitrates (ISO)

nobiletin (ISO)

Nutlin-3 (ISO)

oxaliplatin (EXP)

ozone (EXP)

paracetamol (ISO)

PCB138 (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP)

piroxicam (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (EXP,ISO)

sodium chloride (ISO)

succimer (ISO)

T-2 toxin (EXP)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

mRNA splicing, via spliceosome (IBA)

mRNA transport (IMP)

RNA splicing (IEA)

Cellular Component

catalytic step 2 spliceosome (IBA,ISO)

glutamatergic synapse (EXP,IDA,IMP)

nucleoplasm (ISO)

nucleus (IEA,ISO)

postsynapse (EXP,IDA,IMP)

postsynaptic density (EXP,IDA,IMP)

ribonucleoprotein complex (IDA,IEA)

ribonucleoprotein granule (IDA)

spliceosomal complex (IEA)

Molecular Function

mRNA 3'-UTR binding (IBA)

mRNA binding (IMP)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

RNA transmembrane transporter activity (IMP)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	[Differential analysis of two-dimensional gel electrophoresis profiles in lung tissue of rats exposed to silica early].	Chen JJ, etal., Zhonghua Yu Fang Yi Xue Za Zhi. 2009 May;43(5):418-22.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Identification and verification of novel rodent postsynaptic density proteins.	Jordan BA, etal., Mol Cell Proteomics. 2004 Sep;3(9):857-71. doi: 10.1074/mcp.M400045-MCP200. Epub 2004 May 28.
4.	Heterogeneous nuclear ribonucleoprotein A3, a novel RNA trafficking response element-binding protein.	Ma AS, etal., J Biol Chem 2002 May 17;277(20):18010-20.
5.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
6.	Nuclear actin is associated with a specific subset of hnRNP A/B-type proteins.	Percipalle P, etal., Nucleic Acids Res. 2002 Apr 15;30(8):1725-34.
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	Molecular characterization of a murine, major A/B type hnRNP protein: mBx.	Plomaritoglou A, etal., Biochim Biophys Acta 2000 Jan 31;1490(1-2):54-62.
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:11991638	PMID:12947022	PMID:14766980	PMID:15489334	PMID:16641100	PMID:16854843	PMID:22658674	PMID:22681889	PMID:22720776	PMID:24625528	PMID:26316108
PMID:27461252	PMID:29476059	PMID:32357304	PMID:35352799

Genomics

Comparative Map Data

Hnrnpa3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	80,984,470 - 80,999,413 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	80,985,969 - 80,996,043 (+)	Ensembl				GRCr8
mRatBN7.2	3	60,578,574 - 60,588,755 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	60,578,673 - 60,588,306 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	63,952,911 - 63,963,020 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	72,536,567 - 72,546,676 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	70,302,815 - 70,312,930 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	62,481,222 - 62,491,356 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	62,481,323 - 62,487,227 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	69,029,029 - 69,036,149 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	68,872,863 - 68,875,337 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	60,079,220 - 60,089,344 (+)	NCBI		Celera
Cytogenetic Map	3	q23	NCBI

HNRNPA3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	177,212,794 - 177,223,959 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	177,212,587 - 177,226,106 (+)	Ensembl			hg38	GRCh38
GRCh37	2	178,077,522 - 178,088,687 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	177,785,668 - 177,796,931 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	177,903,034 - 177,909,534	NCBI
Celera	2	171,679,860 - 171,691,117 (+)	NCBI		Celera
Cytogenetic Map	2	q31.2	NCBI
HuRef	2	169,948,728 - 169,959,989 (+)	NCBI		HuRef
CHM1_1	2	178,083,270 - 178,094,521 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	177,695,036 - 177,706,189 (+)	NCBI		T2T-CHM13v2.0

Hnrnpa3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	75,489,416 - 75,499,751 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	75,489,605 - 75,499,751 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	75,659,105 - 75,669,407 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	75,659,261 - 75,669,407 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	75,497,316 - 75,507,464 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	75,460,116 - 75,470,246 (+)	NCBI		MGSCv36	mm8
Celera	2	77,320,414 - 77,330,443 (+)	NCBI		Celera
Cytogenetic Map	2	C3	NCBI
cM Map	2	44.75	NCBI

Hnrnpa3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	19,544,842 - 19,548,417 (-)	Ensembl
ChiLan1.0	NW_004955403	19,540,814 - 19,548,417 (-)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPA3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	79,879,341 - 79,890,582 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	79,894,297 - 79,905,555 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	64,491,827 - 64,503,095 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	182,196,645 - 182,208,039 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	182,196,645 - 182,207,937 (+)	Ensembl			panPan2	panpan1.1

HNRNPA3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	20,974,541 - 20,983,972 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	20,974,648 - 20,980,137 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	20,994,264 - 21,003,455 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	21,118,619 - 21,127,814 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	21,118,687 - 21,128,350 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	21,189,273 - 21,198,469 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	21,190,448 - 21,199,631 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	21,306,219 - 21,315,411 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Hnrnpa3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	138,022,961 - 138,032,537 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936509	6,577,001 - 6,581,934 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936509	6,576,933 - 6,585,734 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPA3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	82,958,362 - 82,968,736 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	82,958,329 - 82,968,740 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	92,417,689 - 92,428,369 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPA3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	62,772,741 - 62,780,695 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	62,772,806 - 62,778,972 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	136,826,743 - 136,837,738 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hnrnpa3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624787	14,341,250 - 14,346,316 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624787	14,341,133 - 14,352,152 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Hnrnpa3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	53,012,652 - 53,022,854 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Hnrnpa3
124 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	62
Count of miRNA genes:	56
Interacting mature miRNAs:	57
Transcripts:	ENSRNOT00000035567
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	73592611	110333156	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	59863663	87321459	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	87321459	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	83358329	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1582249	Bw77	Body weight QTL 77	3.2	0.0025	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	85062403	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

RH127548

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	80,995,217 - 80,995,434 (+)	Marker Load Pipeline
mRatBN7.2	3	60,587,927 - 60,588,144 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	62,490,529 - 62,490,745	NCBI	Rnor6.0
Rnor_5.0	3	69,035,322 - 69,035,538	UniSTS	Rnor5.0
RGSC_v3.4	3	58,360,103 - 58,360,319	UniSTS	RGSC3.4
Celera	3	60,088,517 - 60,088,733	UniSTS
Cytogenetic Map	3	q23	UniSTS

RH139237

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	60,588,540 - 60,588,676 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	62,491,142 - 62,491,277	NCBI	Rnor6.0
Rnor_5.0	3	69,035,935 - 69,036,070	UniSTS	Rnor5.0
RGSC_v3.4	3	58,360,716 - 58,360,851	UniSTS	RGSC3.4
Celera	3	60,089,130 - 60,089,265	UniSTS
Cytogenetic Map	3	q23	UniSTS

RH136328

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	60,586,292 - 60,586,477 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	62,488,894 - 62,489,078	NCBI	Rnor6.0
Rnor_5.0	3	69,033,687 - 69,033,871	UniSTS	Rnor5.0
RGSC_v3.4	3	58,358,468 - 58,358,652	UniSTS	RGSC3.4
Celera	3	60,086,882 - 60,087,066	UniSTS
Cytogenetic Map	3	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001111294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001111295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_198132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AT006305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW534817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY363226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI292197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP488086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB585714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB725005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF110612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF110891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV107265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV109437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y16641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000078872 ⟹ ENSRNOP00000069876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	60,578,721 - 60,588,306 (+)	Ensembl
Rnor_6.0 Ensembl	3	62,481,323 - 62,487,227 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097068 ⟹ ENSRNOP00000079420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	80,985,969 - 80,996,043 (+)	Ensembl
mRatBN7.2 Ensembl	3	60,578,673 - 60,586,630 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100893 ⟹ ENSRNOP00000079754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	80,985,969 - 80,996,043 (+)	Ensembl
mRatBN7.2 Ensembl	3	60,579,298 - 60,586,630 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114122 ⟹ ENSRNOP00000084090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	60,578,721 - 60,588,306 (+)	Ensembl

RefSeq Acc Id:

NM_001111294 ⟹ NP_001104764

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	80,985,934 - 80,996,045 (+)	NCBI
mRatBN7.2	3	60,578,644 - 60,588,755 (+)	NCBI
Rnor_6.0	3	62,481,243 - 62,491,356 (+)	NCBI
Rnor_5.0	3	69,029,029 - 69,036,149 (+)	NCBI
RGSC_v3.4	3	68,872,863 - 68,875,337 (-)	RGD
Celera	3	60,079,220 - 60,089,344 (+)	RGD

Sequence:

show sequence

CATCACGTGGTTACTAGCCCCGCCTCTTCCTCTCGGTCCCATATTGAACTCGAGTTGGAAGAGG
CGAGTCCGGTCTCAAAATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCTGACTCCGGCCGT
CGCCGCCGCCGCCGGGGGGAGGAGGGCCACGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTGT
TTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGG
CACACTTACAGATTGTGTGGTAATGAGAGATCCTCAAACAAAACGTTCCAGAGGCTTTGGTTTT
GTGACCTACTCTTGTGTCGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATG
GACGTGTGGTGGAACCAAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTT
AACAGTGAAGAAGATTTTTGTTGGTGGTATTAAAGAGGATACAGAAGAATATAATCTGAGAGAC
TACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGATAGGCAGAGTGGGAAAA
AGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAG
TCTGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGACGTGGAGGAAACT
TTGGTGGCGGCGGAGGAAACTTTGGGCGTGGAGGAAACTTTGGTGGAAGAGGAGGCTATGGTGG
TGGAGGTGGTGGCAGCAGAGGCAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGT
GATGGTGGCAACTATGGTGGTGGTCCTGGTTACAGTAGTAGAGGAGGTTATGGAGGTGGTGGAC
CAGGATATGGAAACCAAGGTGGTGGATATGGTGGTGGAGGAGGAGGATATGATGGTTACAATGA
AGGAGGAAATTTTGGTGGAGGTAACTATGGTGGTGGTGGGAACTATAATGACTTTGGAAATTAT
AGTGGACAGCAACAATCTAATTATGGACCCATGAAGGGGGGCAGTTTTGGTGGAAGAAGCTCAG
GCAGTCCCTATGGTGGTGGCTATGGATCTGGAGGTGGAAGTGGTGGATATGGTAGCAGAAGGTT
TTAAAATAAAACAAACGGCTACAGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGCT
GCAGGTTACTTTGAGACAGTCGTCCTAAATGCATTAGAGGAACTGTAAAAATCTGCCACAGAAG
GAACGATGATCCATAGTCAGAAAAGTTACTGCAGCTTAAACAGGAAGCCCTTCTTGTTCAGGAC
TGTCATAGCCACAGTTTGCAAAAGTGCAGCTATCGATTAATGCAATGTAGTGTCAATTAGATGT
ACATTCCTGAGGTCTTTTATCTGTTGTAGCTTTGTCTTTTTCTTTTTCTTTTCATTACATCAGG
TATATTGCCCTGTAAATTGTGGTAGTGGTACCAGGAATAAAAAATTAAGGAATTTTTAACTTTT
CAATATTTGTGTAGTTCAGTTTTTCTACATTTTAGTACAGAAACTTTAACAAAATGCAGTTTTG
AAGGTGTTTCCTTGTGAGTTAACAAGTAAAGAAGATCATTGTTAATCACTATTTTGTATGAATT
TTGCTAAAGTTAACTGTAAAGAAACACCTACTGACTTGCAGTTTAAGGGGAATCTATTCTCCCA
TTTCCAAAACCATGATGACTGGGCGCTGACATGTGGAGAGAATAGATACTTGTATGTTTGCAAA
TGTGTGTTTTAGATAATTAGGATTGGGTAATAAAAAATAGCATATTTGTGAATTTAATAGCATT
AAGATTACATTCAAATGAAAAAGATCTCAAAATTTGCTGTTTGGTTTTGTGCATTTTCTTTCAA
AATGTAATCATGATTTTAGTGTGGTAGACTTAAGTCCTAACCATGTTTAAGAACATCTCCATTC
CACATTTACCTTGATAACATTGAAACTGCTGCCAATAGTTTGGGGTATGAAGTGTTTATACTGC
CCTCTACTTCCCAAGGGCGGTAGATGAATGCCATCTCCCTATTTAACAGCCTTTTAATATAGAA
CCACCAAGTCTGCTGTGTCTGAGCAGACTGTGGTGGGTACCTGGTTTGTTTCTGCTTTTAAGAT
TTAAGGTCTCAAAGCCCCATTGGTCTAGTCAACTTTCCTTGGTTACGTTCCCCACACACAGCTT
TTCAGAGCAAAGGAATAAAAATCACTGGTTTGAACCCCTGACTGGCTGGCATGCTTTCCTGTTC
ATATTCTAGCCATTTTGCTGGATGGTGAAGCAAAGTATAGTAAGGTGTCGTCTAAACCAAGCAG
CAGAAGATGTAGCACACACAGTTGCTCAGTGCAAGCACCTCACTTCCCAAATATCTCAATTCAA
ATTCAGAACGTCTTGAGTCCTTAAATCCCCAAAGAACACATGGTTATTCTTGTATATATATCAT
TCTAAAACATGTTGGGTGTGACAATTTGGAGAACCTGTTTGAGGAGCTTTAGATACTAAGGTGG
TCATATACATGAAAAAAAAATGTCTGCTGTTGCGCCAGCTAGTGCTTAACAATTTCATTCAAGT
CCTAAGTATGTGCCCTGCTGTTACTTTCTTTGGCAGTTGACCGTTGAATTCAGATTTTTACTTG
GTTTTTAAAGTATAAGCTAAACAAGCAATAAAAAGGGGAATGGGGTGTGCTAGTATTTCAATAT
GCTCTCTTGTTGCTCTACTGTGCCTCTGTGCATTAATATTTGGATGCATGCAATGCTAGCATGG
AACTTTGGTCTTCACAAATACTGCAGTTTTTCCAGAAAACACTCACAAACCAATAAATGTAACA
GACAACATTCCATTTGTTAATGGGCATATGTGCATAAGCAGTGTAGAAAATAGGCTCATGTTAG
AAACTGGTTACATCCTTCATAACTAAAAGTGTGGTTATTTGAATGGACACTGTCAATGTTCATA
GCTTAAACCTGGGTACCTGGTCAAAATGCTTAGGAAACATTAAAATTGAGCTAAATTGTCTCAA
GTCCTTTTATTCATATAATAAAGATGGAAGAAATGGGATGGGGGAGGCTGGCAGTTCCTGCTTT
GTTTGTGAAATTGTTGGGCACAACCTTGACAGTATCCTTAAATGTAATGAGGTCAATTGTATTA
ACCAACTTTTTATGTTCTGGAACTAGTATCATAGTGAAACCTTTTTCAGTAAGTTGATGTTTAC
AACCTATAATCAGGTGAAACCTGTATGTGGCCTGTTTATAAGTTGTACTAAGTTAGTTTTTGTG
AACAGTGTGGAAGAGTAAGCCATGAGAGCGATTTAACCAGCTTTAAAGGACCTAAGTTGTGCTT
TTTAAGCACTGGATCAAAGGAAAACCCACTAAGACAGGACTTCAGCAGCCAATTGAGTATGGAC
AAGTCAGCATAAATAAAGAATGAGAAGGCAGCAGCAAGAGCTTCAACAACAGAGAAGTGGAGGC
ATAAGATACTATGGTGATAGTGAGCAACTTCCCAAAAGCTAGTTAAAGCTGCTTATTACAACTG
AATGTCGAAGAAAGTAGCAGGAAGGAGCTCCGCCATTTGGAACATCAATGAGCTAGTTGCCACA
GGCACTAGGTCTAGCGTTTAGACCTGCAAGGAAGGGCAATAAGCATTAGGTAAGGCTTGAATTT
GATTTTTTTTTCACTAATTAAAGAATACTTTTTGTAAAGCAAGGTAAGAGTAATCTTTTTGATT
TGCAGGTGAATGAGAACCCTACCTGCCTAACTGAGGAATGTCTTTCCCACCACCTTAAATACGA
AGGTTTCTGGCTGGGTAAGGTTTGTAGCTCACAGTAAAAACCGATGACCGTTGGTTTCCCTACA
AATTAATGGGACAGTTTGAGACATTACCCCTCAAGCTCAGTTTTATTTGGTACCCCATAGAACA
AGTTCTAAGCCTTAGGCAGTTATACCATGCCAAGGGTATTTGTCATGAGCCAGATGTGTTCTCT
TCATATGTACAACTTGCTGTTCCAAGGGAAAGGCAGCTTTCCATAACGGAAAGTCATGTTGGCT
TTTCAGAAAGTAATTTTTGGTGTATGACTTTATAATGAGCTGCTAGTTTCCCTAGTTCCACCCT
AGGAAAGCAAGGAACTTTCACAATTGTCAAAATGTCTTCCTCAAAGTTCTCTAGCTTAAAAGTT
TACTATTGCATGGACCAGCAGGGACAGTCAGTTTAGTTATGTGTTTTTAGTCTTCCCCAAAACC
CATCACACCAACAGTCTGGTCTCACTGTTGTCCTAGCTTGGAACTCAGTCCACCAGCCTTCTGT
CACCCAAGTGCTGGGATTAAAGGGTGGTGCCTATATGACAACTCATTCCTTTAAAAAAAAAAAT
CCAAAGAACGGCTGGGTTACTATTAAAATGTGTTGCTGATTGTCCAAAAGGGCTATTTCTGCTG
CCCTGAAAGGGCTTCTTTGAAAATTGCTTAATTCAGGTTACTTTTTAATAGAATATTTTCAGGG
GACAAATCTGCAAAATGTTTCCTTCACAGGGATACCCTGCATTGCATCAACAAGTTTGTGTGGC
ATTTAAGTCAGGATGAATTCACAGAAATAGGTAGCAATCTTTCAGTGGTGGTTACTTAATAGAT
TTAGAAAAATAAATACGTTATCTTAAAAGGCATTTACAGTTCATTTCCTTTCTGAAATAAAATT
ATTTTACTTAATATGGTTCCACTGTCATTTCTGCAAAAATCGTTGGTAGCAACGGTGAACAAGA
AAACAAACGAAGGCTGACTTTGGTTTTGTTGGACTTGTGGGATACTGCTTCCAGTTTATGTCTG
AAAGCTGTGTTCACATTCATGTTGAAATTAGGGAACACATGGAGAAAAAGTTCTGGTAGGGGAC
TACAGCGAGTTCAACTTGGTTTTTATGAGTTCTGTCACGATTTAAAACGCCTGACAACGGTACG
GTGATTGGCATGGTAGCAAGCATGCAGATATGCAAGGTGCTGTGAGGATCGGTAGCCTGTCCAA
GTATTCAGTTTTGAAGCTAACATGTTTTCAGATCTTTATGACAGCAGAGGTGGTCTGTAATTCA
ATTGTTTCATTTGTAGCATAATGAAATGTTACAGAAAGATGACCTTTTCATTAAAATATTTTTA
GAAATGTGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001111295 ⟹ NP_001104765

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	80,985,934 - 80,991,916 (+)	NCBI
mRatBN7.2	3	60,578,644 - 60,584,626 (+)	NCBI
Rnor_6.0	3	62,481,243 - 62,487,227 (+)	NCBI
Rnor_5.0	3	69,029,029 - 69,036,149 (+)	NCBI
RGSC_v3.4	3	68,872,863 - 68,875,337 (-)	RGD
Celera	3	60,079,220 - 60,085,215 (+)	NCBI

Sequence:

show sequence

CATCACGTGGTTACTAGCCCCGCCTCTTCCTCTCGGTCCCATATTGAACTCGAGTTGGAAGAGG
CGAGTCCGGTCTCAAAATGGAGGGCCACGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTGTTT
ATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCA
CACTTACAGATTGTGTGGTAATGAGAGATCCTCAAACAAAACGTTCCAGAGGCTTTGGTTTTGT
GACCTACTCTTGTGTCGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGA
CGTGTGGTGGAACCAAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAA
CAGTGAAGAAGATTTTTGTTGGTGGTATTAAAGAGGATACAGAAGAATATAATCTGAGAGACTA
CTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGATAGGCAGAGTGGGAAAAAG
AGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAAAT
ACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTC
TGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGACGTGGAGGAAACTTT
GGTGGCGGCGGAGGAAACTTTGGGCGTGGAGGAAACTTTGGTGGAAGAGGAGGCTATGGTGGTG
GAGGTGGTGGCAGCAGAGGCAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGA
TGGTGGCAACTATGGTGGTGGTCCTGGTTACAGTAGTAGAGGAGGTTATGGAGGTGGTGGACCA
GGATATGGAAACCAAGGTGGTGGATATGGTGGTGGAGGAGGAGGATATGATGGTTACAATGAAG
GAGGAAATTTTGGTGGAGGTAACTATGGTGGTGGTGGGAACTATAATGACTTTGGAAATTATAG
TGGACAGCAACAATCTAATTATGGACCCATGAAGGGGGGCAGTTTTGGTGGAAGAAGCTCAGGC
AGTCCCTATGGTGGTGGCTATGGATCTGGAGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTTT
AA

hide sequence

RefSeq Acc Id:

NM_198132 ⟹ NP_937765

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	80,985,934 - 80,996,045 (+)	NCBI
mRatBN7.2	3	60,578,644 - 60,588,755 (+)	NCBI
Rnor_6.0	3	62,481,243 - 62,491,356 (+)	NCBI
Rnor_5.0	3	69,029,029 - 69,036,149 (+)	NCBI
RGSC_v3.4	3	68,872,863 - 68,875,337 (-)	RGD
Celera	3	60,079,220 - 60,089,344 (+)	RGD

Sequence:

show sequence

CATCACGTGGTTACTAGCCCCGCCTCTTCCTCTCGGTCCCATATTGAACTCGAGTTGGAAGAGG
CGAGTCCGGTCTCAAAATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCTGACTCCGGCCGT
CGCCGCCGCCGCCGGGGGGAGGAGGGCCACGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTGT
TTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGG
CACACTTACAGATTGTGTGGTAATGAGAGATCCTCAAACAAAACGTTCCAGAGGCTTTGGTTTT
GTGACCTACTCTTGTGTCGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATG
GACGTGTGGTGGAACCAAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTT
AACAGTGAAGAAGATTTTTGTTGGTGGTATTAAAGAGGATACAGAAGAATATAATCTGAGAGAC
TACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGATAGGCAGAGTGGGAAAA
AGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAG
TCTGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGACGTGGAGGAAACT
TTGGTGGCGGCGGAGGAAACTTTGGGCGTGGAGGAAACTTTGGTGGAAGAGGAGGCTATGGTGG
TGGAGGTGGTGGCAGCAGAGGCAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGT
GATGGTGGCAACTATGGTGGTGGTCCTGGTTACAGTAGTAGAGGAGGTTATGGAGGTGGTGGAC
CAGGATATGGAAACCAAGGTGGTGGATATGGTGGTGGAGGAGGAGGATATGATGGTTACAATGA
AGGAGGAAATTTTGGTGGAGGTAACTATGGTGGTGGTGGGAACTATAATGACTTTGGAAATTAT
AGTGGACAGCAACAATCTAATTATGGACCCATGAAGGGGGGCAGTTTTGGTGGAAGAAGCTCAG
GCAGTCCCTATGGTGGTGGCTATGGATCTGGAGGTGGAAGTGGTGGATATGGTAGCAGAAGGTT
TTAAAATAAAACAAACGGTGAATGAGAACCCTACCTGCCTAACTGAGGAATGTCTTTCCCACCA
CCTTAAATACGAAGGTTTCTGGCTGGGTAAGGTTTGTAGCTCACAGTAAAAACCGATGACCGTT
GGTTTCCCTACAAATTAATGGGACAGTTTGAGACATTACCCCTCAAGCTCAGTTTTATTTGGTA
CCCCATAGAACAAGTTCTAAGCCTTAGGCAGTTATACCATGCCAAGGGTATTTGTCATGAGCCA
GATGTGTTCTCTTCATATGTACAACTTGCTGTTCCAAGGGAAAGGCAGCTTTCCATAACGGAAA
GTCATGTTGGCTTTTCAGAAAGTAATTTTTGGTGTATGACTTTATAATGAGCTGCTAGTTTCCC
TAGTTCCACCCTAGGAAAGCAAGGAACTTTCACAATTGTCAAAATGTCTTCCTCAAAGTTCTCT
AGCTTAAAAGTTTACTATTGCATGGACCAGCAGGGACAGTCAGTTTAGTTATGTGTTTTTAGTC
TTCCCCAAAACCCATCACACCAACAGTCTGGTCTCACTGTTGTCCTAGCTTGGAACTCAGTCCA
CCAGCCTTCTGTCACCCAAGTGCTGGGATTAAAGGGTGGTGCCTATATGACAACTCATTCCTTT
AAAAAAAAAAATCCAAAGAACGGCTGGGTTACTATTAAAATGTGTTGCTGATTGTCCAAAAGGG
CTATTTCTGCTGCCCTGAAAGGGCTTCTTTGAAAATTGCTTAATTCAGGTTACTTTTTAATAGA
ATATTTTCAGGGGACAAATCTGCAAAATGTTTCCTTCACAGGGATACCCTGCATTGCATCAACA
AGTTTGTGTGGCATTTAAGTCAGGATGAATTCACAGAAATAGGTAGCAATCTTTCAGTGGTGGT
TACTTAATAGATTTAGAAAAATAAATACGTTATCTTAAAAGGCATTTACAGTTCATTTCCTTTC
TGAAATAAAATTATTTTACTTAATATGGTTCCACTGTCATTTCTGCAAAAATCGTTGGTAGCAA
CGGTGAACAAGAAAACAAACGAAGGCTGACTTTGGTTTTGTTGGACTTGTGGGATACTGCTTCC
AGTTTATGTCTGAAAGCTGTGTTCACATTCATGTTGAAATTAGGGAACACATGGAGAAAAAGTT
CTGGTAGGGGACTACAGCGAGTTCAACTTGGTTTTTATGAGTTCTGTCACGATTTAAAACGCCT
GACAACGGTACGGTGATTGGCATGGTAGCAAGCATGCAGATATGCAAGGTGCTGTGAGGATCGG
TAGCCTGTCCAAGTATTCAGTTTTGAAGCTAACATGTTTTCAGATCTTTATGACAGCAGAGGTG
GTCTGTAATTCAATTGTTTCATTTGTAGCATAATGAAATGTTACAGAAAGATGACCTTTTCATT
AAAATATTTTTAGAAATGTGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008761911 ⟹ XP_008760133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	80,984,470 - 80,996,045 (+)	NCBI
mRatBN7.2	3	60,578,574 - 60,586,630 (+)	NCBI
Rnor_6.0	3	62,481,222 - 62,491,352 (+)	NCBI

Sequence:

show sequence

GCGGGCGGCGCGCGGATAGAACATCACGTGGTTACTAGCCCCGCCTCTTCCTCTCGGTCCCATA
TTGAACTCGAGTTGGAAGAGGCGAGTCCGGTCTCAAAATGGAGGGCCACGATCCAAAGGAACCA
GAGCAGCTGAGGAAGCTGTTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAG
AACATTTTGAGAAATGGGGCACACTTACAGATTGTGTGGTAATGAGAGATCCTCAAACAAAACG
TTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTCGAAGAGGTGGATGCTGCAATGTGTGCT
CGGCCACACAAGGTTGATGGACGTGTGGTGGAACCAAAGAGAGCTGTTTCTAGAGAGGATTCTG
TAAAGCCTGGTGCCCATTTAACAGTGAAGAAGATTTTTGTTGGTGGTATTAAAGAGGATACAGA
AGAATATAATCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAA
GATAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTG
ATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCT
TTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTT
ATGGGACGTGGAGGAAACTTTGGTGGCGGCGGAGGAAACTTTGGGCGTGGAGGAAACTTTGGTG
GAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGCAGTTATGGAGGTGGTGATGGTGG
ATATAATGGATTTGGAGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTACAGTAGTAGAGGA
GGTTATGGAGGTGGTGGACCAGGATATGGAAACCAAGGTGGTGGATATGGTGGTGGAGGAGGAG
GATATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAGGTAACTATGGTGGTGGTGGGAACTA
TAATGACTTTGGAAATTATAGTGGACAGCAACAATCTAATTATGGACCCATGAAGGGGGGCAGT
TTTGGTGGAAGAAGCTCAGGCAGTCCCTATGGTGGTGGCTATGGATCTGGAGGTGGAAGTGGTG
GATATGGTAGCAGAAGGTTTTAAAATAAAACAAACGGCTACAGTTCTTAGCAGGAGAGAGAGCG
AGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCTAAATGCATTAGAGGAACTG
TAAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAGAAAAGTTACTGCAGCTTAAACAGGA
AGCCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAGTGCAGCTATCGATTAATGCAA
TGTAGTGTCAATTAGATGTACATTCCTGAGGTCTTTTATCTGTTGTAGCTTTGTCTTTTTCTTT
TTCTTTTCATTACATCAGGTATATTGCCCTGTAAATTGTGGTAGTGGTACCAGGAATAAAAAAT
TAAGGAATTTTTAACTTTTCAATATTTGTGTAGTTCAGTTTTTCTACATTTTAGTACAGAAACT
TTAACAAAATGCAGTTTTGAAGGTGTTTCCTTGTGAGTTAACAAGTAAAGAAGATCATTGTTAA
TCACTATTTTGTATGAATTTTGCTAAAGTTAACTGTAAAGAAACACCTACTGACTTGCAGTTTA
AGGGGAATCTATTCTCCCATTTCCAAAACCATGATGACTGGGCGCTGACATGTGGAGAGAATAG
ATACTTGTATGTTTGCAAATGTGTGTTTTAGATAATTAGGATTGGGTAATAAAAAATAGCATAT
TTGTGAATTTAATAGCATTAAGATTACATTCAAATGAAAAAGATCTCAAAATTTGCTGTTTGGT
TTTGTGCATTTTCTTTCAAAATGTAATCATGATTTTAGTGTGGTAGACTTAAGTCCTAACCATG
TTTAAGAACATCTCCATTCCACATTTACCTTGATAACATTGAAACTGCTGCCAATAGTTTGGGG
TATGAAGTGTTTATACTGCCCTCTACTTCCCAAGGGCGGTAGATGAATGCCATCTCCCTATTTA
ACAGCCTTTTAATATAGAACCACCAAGTCTGCTGTGTCTGAGCAGACTGTGGTGGGTACCTGGT
TTGTTTCTGCTTTTAAGATTTAAGGTCTCAAAGCCCCATTGGTCTAGTCAACTTTCCTTGGTTA
CGTTCCCCACACACAGCTTTTCAGAGCAAAGGAATAAAAATCACTGGTTTGAACCCCTGACTGG
CTGGCATGCTTTCCTGTTCATATTCTAGCCATTTTGCTGGATGGTGAAGCAAAGTATAGTAAGG
TGTCGTCTAAACCAAGCAGCAGAAGATGTAGCACACACAGTTGCTCAGTGCAAGCACCTCACTT
CCCAAATATCTCAATTCAAATTCAGAACGTCTTGAGTCCTTAAATCCCCAAAGAACACATGGTT
ATTCTTGTATATATATCATTCTAAAACATGTTGGGTGTGACAATTTGGAGAACCTGTTTGAGGA
GCTTTAGATACTAAGGTGGTCATATACATGAAAAAAAAATGTCTGCTGTTGCGCCAGCTAGTGC
TTAACAATTTCATTCAAGTCCTAAGTATGTGCCCTGCTGTTACTTTCTTTGGCAGTTGACCGTT
GAATTCAGATTTTTACTTGGTTTTTAAAGTATAAGCTAAACAAGCAATAAAAAGGGGAATGGGG
TGTGCTAGTATTTCAATATGCTCTCTTGTTGCTCTACTGTGCCTCTGTGCATTAATATTTGGAT
GCATGCAATGCTAGCATGGAACTTTGGTCTTCACAAATACTGCAGTTTTTCCAGAAAACACTCA
CAAACCAATAAATGTAACAGACAACATTCCATTTGTTAATGGGCATATGTGCATAAGCAGTGTA
GAAAATAGGCTCATGTTAGAAACTGGTTACATCCTTCATAACTAAAAGTGTGGTTATTTGAATG
GACACTGTCAATGTTCATAGCTTAAACCTGGGTACCTGGTCAAAATGCTTAGGAAACATTAAAA
TTGAGCTAAATTGTCTCAAGTCCTTTTATTCATATAATAAAGATGGAAGAAATGGGATGGGGGA
GGCTGGCAGTTCCTGCTTTGTTTGTGAAATTGTTGGGCACAACCTTGACAGTATCCTTAAATGT
AATGAGGTCAATTGTATTAACCAACTTTTTATGTTCTGGAACTAGTATCATAGTGAAACCTTTT
TCAGTAAGTTGATGTTTACAACCTATAATCAGGTGAAACCTGTATGTGGCCTGTTTATAAGTTG
TACTAAGTTAGTTTTTGTGAACAGTGTGGAAGAGTAAGCCATGAGAGCGATTTAACCAGCTTTA
AAGGACCTAAGTTGTGCTTTTTAAGCACTGGATCAAAGGAAAACCCACTAAGACAGGACTTCAG
CAGCCAATTGAGTATGGACAAGTCAGCATAAATAAAGAATGAGAAGGCAGCAGCAAGAGCTTCA
ACAACAGAGAAGTGGAGGCATAAGATACTATGGTGATAGTGAGCAACTTCCCAAAAGCTAGTTA
AAGCTGCTTATTACAACTGAATGTCGAAGAAAGTAGCAGGAAGGAGCTCCGCCATTTGGAACAT
CAATGAGCTAGTTGCCACAGGCACTAGGTCTAGCGTTTAGACCTGCAAGGAAGGGCAATAAGCA
TTAGGTAAGGCTTGAATTTGATTTTTTTTTCACTAATTAAAGAATACTTTTTGTAAAGCAAGGT
AAGAGTAATCTTTTTGATTTGCAGGTGAATGAGAACCCTACCTGCCTAACTGAGGAATGTCTTT
CCCACCACCTTAAATACGAAGGTTTCTGGCTGGGTAAGGTTTGTAGCTCACAGTAAAAACCGAT
GACCGTTGGTTTCCCTACAAATTAATGGGACAGTTTGAGACATTACCCCTCAAGCTCAGTTTTA
TTTGGTACCCCATAGAACAAGTTCTAAGCCTTAGGCAGTTATACCATGCCAAGGGTATTTGTCA
TGAGCCAGATGTGTTCTCTTCATATGTACAACTTGCTGTTCCAAGGGAAAGGCAGCTTTCCATA
ACGGAAAGTCATGTTGGCTTTTCAGAAAGTAATTTTTGGTGTATGACTTTATAATGAGCTGCTA
GTTTCCCTAGTTCCACCCTAGGAAAGCAAGGAACTTTCACAATTGTCAAAATGTCTTCCTCAAA
GTTCTCTAGCTTAAAAGTTTACTATTGCATGGACCAGCAGGGACAGTCAGTTTAGTTATGTGTT
TTTAGTCTTCCCCAAAACCCATCACACCAACAGTCTGGTCTCACTGTTGTCCTAGCTTGGAACT
CAGTCCACCAGCCTTCTGTCACCCAAGTGCTGGGATTAAAGGGTGGTGCCTATATGACAACTCA
TTCCTTTAAAAAAAAAAATCCAAAGAACGGCTGGGTTACTATTAAAATGTGTTGCTGATTGTCC
AAAAGGGCTATTTCTGCTGCCCTGAAAGGGCTTCTTTGAAAATTGCTTAATTCAGGTTACTTTT
TAATAGAATATTTTCAGGGGACAAATCTGCAAAATGTTTCCTTCACAGGGATACCCTGCATTGC
ATCAACAAGTTTGTGTGGCATTTAAGTCAGGATGAATTCACAGAAATAGGTAGCAATCTTTCAG
TGGTGGTTACTTAATAGATTTAGAAAAATAAATACGTTATCTTAAAAGGCATTTACAGTTCATT
TCCTTTCTGAAATAAAATTATTTTACTTAATATGGTTCCACTGTCATTTCTGCAAAAATCGTTG
GTAGCAACGGTGAACAAGAAAACAAACGAAGGCTGACTTTGGTTTTGTTGGACTTGTGGGATAC
TGCTTCCAGTTTATGTCTGAAAGCTGTGTTCACATTCATGTTGAAATTAGGGAACACATGGAGA
AAAAGTTCTGGTAGGGGACTACAGCGAGTTCAACTTGGTTTTTATGAGTTCTGTCACGATTTAA
AACGCCTGACAACGGTACGGTGATTGGCATGGTAGCAAGCATGCAGATATGCAAGGTGCTGTGA
GGATCGGTAGCCTGTCCAAGTATTCAGTTTTGAAGCTAACATGTTTTCAGATCTTTATGACAGC
AGAGGTGGTCTGTAATTCAATTGTTTCATTTGTAGCATAATGAAATGTTACAGAAAGATGACCT
TTTCATTAAAATATTTTTAGAAA

hide sequence

RefSeq Acc Id:

XM_008761912 ⟹ XP_008760134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	80,984,470 - 80,996,045 (+)	NCBI
mRatBN7.2	3	60,578,574 - 60,588,755 (+)	NCBI
Rnor_6.0	3	62,481,222 - 62,491,356 (+)	NCBI

Sequence:

show sequence

GCGGGCGGCGCGCGGATAGAACATCACGTGGTTACTAGCCCCGCCTCTTCCTCTCGGTCCCATA
TTGAACTCGAGTTGGAAGAGGCGAGTCCGGTCTCAAAATGGAGGGCCACGATCCAAAGGAACCA
GAGCAGCTGAGGAAGCTGTTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAG
AACATTTTGAGAAATGGGGCACACTTACAGATTGTGTGGTAATGAGAGATCCTCAAACAAAACG
TTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTCGAAGAGGTGGATGCTGCAATGTGTGCT
CGGCCACACAAGGTTGATGGACGTGTGGTGGAACCAAAGAGAGCTGTTTCTAGAGAGGATTCTG
TAAAGCCTGGTGCCCATTTAACAGTGAAGAAGATTTTTGTTGGTGGTATTAAAGAGGATACAGA
AGAATATAATCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAA
GATAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTG
ATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCT
TTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTT
ATGGGACGTGGAGGAAACTTTGGTGGCGGCGGAGGAAACTTTGGGCGTGGAGGAAACTTTGGTG
GAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGCAGTTATGGAGGTGGTGATGGTGG
ATATAATGGATTTGGAGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTACAGTAGTAGAGGA
GGTTATGGAGGTGGTGGACCAGGATATGGAAACCAAGGTGGTGGATATGGTGGTGGAGGAGGAG
GATATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAGGTAACTATGGTGGTGGTGGGAACTA
TAATGACTTTGGAAATTATAGTGGACAGCAACAATCTAATTATGGACCCATGAAGGGGGGCAGT
TTTGGTGGAAGAAGCTCAGGCAGTCCCTATGGTGGTGGCTATGGATCTGGAGGTGGAAGTGGTG
GATATGGTAGCAGAAGGTTTTAAAATAAAACAAACGGTGAATGAGAACCCTACCTGCCTAACTG
AGGAATGTCTTTCCCACCACCTTAAATACGAAGGTTTCTGGCTGGGTAAGGTTTGTAGCTCACA
GTAAAAACCGATGACCGTTGGTTTCCCTACAAATTAATGGGACAGTTTGAGACATTACCCCTCA
AGCTCAGTTTTATTTGGTACCCCATAGAACAAGTTCTAAGCCTTAGGCAGTTATACCATGCCAA
GGGTATTTGTCATGAGCCAGATGTGTTCTCTTCATATGTACAACTTGCTGTTCCAAGGGAAAGG
CAGCTTTCCATAACGGAAAGTCATGTTGGCTTTTCAGAAAGTAATTTTTGGTGTATGACTTTAT
AATGAGCTGCTAGTTTCCCTAGTTCCACCCTAGGAAAGCAAGGAACTTTCACAATTGTCAAAAT
GTCTTCCTCAAAGTTCTCTAGCTTAAAAGTTTACTATTGCATGGACCAGCAGGGACAGTCAGTT
TAGTTATGTGTTTTTAGTCTTCCCCAAAACCCATCACACCAACAGTCTGGTCTCACTGTTGTCC
TAGCTTGGAACTCAGTCCACCAGCCTTCTGTCACCCAAGTGCTGGGATTAAAGGGTGGTGCCTA
TATGACAACTCATTCCTTTAAAAAAAAAAATCCAAAGAACGGCTGGGTTACTATTAAAATGTGT
TGCTGATTGTCCAAAAGGGCTATTTCTGCTGCCCTGAAAGGGCTTCTTTGAAAATTGCTTAATT
CAGGTTACTTTTTAATAGAATATTTTCAGGGGACAAATCTGCAAAATGTTTCCTTCACAGGGAT
ACCCTGCATTGCATCAACAAGTTTGTGTGGCATTTAAGTCAGGATGAATTCACAGAAATAGGTA
GCAATCTTTCAGTGGTGGTTACTTAATAGATTTAGAAAAATAAATACGTTATCTTAAAAGGCAT
TTACAGTTCATTTCCTTTCTGAAATAAAATTATTTTACTTAATATGGTTCCACTGTCATTTCTG
CAAAAATCGTTGGTAGCAACGGTGAACAAGAAAACAAACGAAGGCTGACTTTGGTTTTGTTGGA
CTTGTGGGATACTGCTTCCAGTTTATGTCTGAAAGCTGTGTTCACATTCATGTTGAAATTAGGG
AACACATGGAGAAAAAGTTCTGGTAGGGGACTACAGCGAGTTCAACTTGGTTTTTATGAGTTCT
GTCACGATTTAAAACGCCTGACAACGGTACGGTGATTGGCATGGTAGCAAGCATGCAGATATGC
AAGGTGCTGTGAGGATCGGTAGCCTGTCCAAGTATTCAGTTTTGAAGCTAACATGTTTTCAGAT
CTTTATGACAGCAGAGGTGGTCTGTAATTCAATTGTTTCATTTGTAGCATAATGAAATGTTACA
GAAAGATGACCTTTTCATTAAAATATTTTTAGAAATGTG

hide sequence

RefSeq Acc Id:

XM_063284131 ⟹ XP_063140201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	80,984,470 - 80,999,413 (+)	NCBI

RefSeq Acc Id:

XM_063284132 ⟹ XP_063140202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	80,984,470 - 80,996,045 (+)	NCBI

RefSeq Acc Id:

XM_063284134 ⟹ XP_063140204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	80,984,470 - 80,999,413 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001104764	(Get FASTA)	NCBI Sequence Viewer
	NP_001104765	(Get FASTA)	NCBI Sequence Viewer
	NP_937765	(Get FASTA)	NCBI Sequence Viewer
	XP_008760133	(Get FASTA)	NCBI Sequence Viewer
	XP_008760134	(Get FASTA)	NCBI Sequence Viewer
	XP_063140201	(Get FASTA)	NCBI Sequence Viewer
	XP_063140202	(Get FASTA)	NCBI Sequence Viewer
	XP_063140204	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81878	(Get FASTA)	NCBI Sequence Viewer
	AAQ63630	(Get FASTA)	NCBI Sequence Viewer
	CAA76339	(Get FASTA)	NCBI Sequence Viewer
	EDL79196	(Get FASTA)	NCBI Sequence Viewer
	EDL79197	(Get FASTA)	NCBI Sequence Viewer
	EDL79198	(Get FASTA)	NCBI Sequence Viewer
	EDL79199	(Get FASTA)	NCBI Sequence Viewer
	EDL79204	(Get FASTA)	NCBI Sequence Viewer
	EDL79205	(Get FASTA)	NCBI Sequence Viewer
	EDL79206	(Get FASTA)	NCBI Sequence Viewer
	EDL79207	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069876.1
	ENSRNOP00000079420
GenBank Protein	Q6URK4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_937765 ⟸ NM_198132
- Peptide Label:	isoform a
- UniProtKB:	Q6URK3 (UniProtKB/Swiss-Prot), Q6URK4 (UniProtKB/Swiss-Prot), A6HME5 (UniProtKB/TrEMBL), D4A6A2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKI FVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN GHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGS RGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFG GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF hide sequence

RefSeq Acc Id:	NP_001104764 ⟸ NM_001111294
- Peptide Label:	isoform a
- UniProtKB:	Q6URK3 (UniProtKB/Swiss-Prot), Q6URK4 (UniProtKB/Swiss-Prot), A6HME5 (UniProtKB/TrEMBL), D4A6A2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKI FVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN GHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGS RGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFG GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF hide sequence

RefSeq Acc Id:	NP_001104765 ⟸ NM_001111295
- Peptide Label:	isoform b
- UniProtKB:	A6HME9 (UniProtKB/TrEMBL), D4A6A2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYG GGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQS NYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF hide sequence

RefSeq Acc Id:	XP_008760134 ⟸ XM_008761912
- Peptide Label:	isoform X3
- UniProtKB:	A6HME9 (UniProtKB/TrEMBL), D4A6A2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYG GGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQS NYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF hide sequence

RefSeq Acc Id:	XP_008760133 ⟸ XM_008761911
- Peptide Label:	isoform X3
- UniProtKB:	A6HME9 (UniProtKB/TrEMBL), D4A6A2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYG GGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQS NYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF hide sequence

Ensembl Acc Id:

ENSRNOP00000069876 ⟸ ENSRNOT00000078872

Ensembl Acc Id:

ENSRNOP00000079420 ⟸ ENSRNOT00000097068

Ensembl Acc Id:

ENSRNOP00000084090 ⟸ ENSRNOT00000114122

Ensembl Acc Id:

ENSRNOP00000079754 ⟸ ENSRNOT00000100893

RefSeq Acc Id:	XP_063140201 ⟸ XM_063284131
- Peptide Label:	isoform X1
- UniProtKB:	Q6URK4 (UniProtKB/Swiss-Prot), Q6URK3 (UniProtKB/Swiss-Prot), A6HME5 (UniProtKB/TrEMBL), D4A6A2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140204 ⟸ XM_063284134
- Peptide Label:	isoform X3
- UniProtKB:	A6HME9 (UniProtKB/TrEMBL), D4A6A2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140202 ⟸ XM_063284132
- Peptide Label:	isoform X2

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6URK4-F1-model_v2	AlphaFold	Q6URK4	1-379	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692152

Promoter ID:

EPDNEW_R2677

Type:

multiple initiation site

Name:

Hnrnpa3_1

Description:

heterogeneous nuclear ribonucleoprotein A3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	62,481,266 - 62,481,326	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727807	AgrOrtholog
BioCyc Gene	G2FUF-49303	BioCyc
Ensembl Genes	ENSRNOG00000052968	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000078872.2	UniProtKB/Swiss-Prot
	ENSRNOT00000097068	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7108128	IMAGE-MGC_LOAD
InterPro	hnRNPA3_RRM2	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:362152	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93744	IMAGE-MGC_LOAD
NCBI Gene	362152	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A3	UniProtKB/Swiss-Prot
	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Hnrnpa3	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000052968	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZMP2_RAT	UniProtKB/TrEMBL
	A0A8I5ZNL7_RAT	UniProtKB/TrEMBL
	A6HME5	ENTREZGENE, UniProtKB/TrEMBL
	A6HME9	ENTREZGENE, UniProtKB/TrEMBL
	D4A6A2	ENTREZGENE, UniProtKB/TrEMBL
	Q6URK3	ENTREZGENE
	Q6URK4	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q6URK3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-05-19	Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	hnRNPA3		Symbol updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	protein localizes to the nucleus and to cytoplasmic transport granules in the neurites of cultured hippocampal neurons	625404
gene_expression	the larger two alternative transcripts are expressed most highly in brain, lung and testes	625404
gene_physical_interaction	binds to the cis-acting response element, A2RE	625404
gene_transcript	alternative splicing produces 4 transcripts giving protiens with apparent molecular masses of 38-, 39-, 41-, and 41.5-kDa	625404

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)