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Gene: Itgad (integrin subunit alpha D) Rattus norvegicus

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Symbol:

Itgad

Name:

integrin subunit alpha D

RGD ID:

71075

Description:

Predicted to enable signaling receptor activity. Predicted to be involved in cell-matrix adhesion; heterotypic cell-cell adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within activated T cell proliferation. Predicted to be located in membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface. Orthologous to human ITGAD (integrin subunit alpha D); PARTICIPATES IN integrin mediated signaling pathway; INTERACTS WITH acetamide; ammonium chloride; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

integrin alpha X; integrin alpha X (Cd11c); integrin alpha-D; integrin, alpha D; Itgax

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ITGAD (integrin subunit alpha D)	RGD	RGD
Mus musculus (house mouse):	Itgad (integrin, alpha D)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Itgad (integrin subunit alpha D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ITGAD (integrin subunit alpha D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC607096 (integrin alpha-D-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Itgad (integrin subunit alpha D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ITGAD (integrin subunit alpha D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ITGAD (integrin subunit alpha D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ITGAM (integrin subunit alpha M)	HGNC	OrthoDB
Homo sapiens (human):	ITGAX (integrin subunit alpha X)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	ITGAD (integrin subunit alpha D)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Itgad (integrin, alpha D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	itgam (integrin, alpha M (complement component 3 receptor 3 subunit))	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-32n7.4	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	itgad	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC101735096	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC101735096	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	192,190,204 - 192,218,864 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	192,190,204 - 192,218,864 (+)	Ensembl				GRCr8
mRatBN7.2	1	182,759,762 - 182,788,422 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	182,759,740 - 182,788,161 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	191,110,263 - 191,138,916 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	198,296,358 - 198,325,011 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	190,966,810 - 190,995,472 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	199,595,968 - 199,623,931 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	199,495,298 - 199,623,960 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	206,632,107 - 206,669,878 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	187,436,291 - 187,464,212 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	180,405,943 - 180,434,140 (+)	NCBI		Celera
RGSC_v3.1	1	187,586,171 - 187,614,093 (+)	NCBI
Cytogenetic Map	1	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

lung adenocarcinoma (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

dioxygen (EXP)

epalrestat (ISO)

furan (EXP)

graphite (EXP)

methapyrilene (ISO)

okadaic acid (ISO)

ozone (ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

tebuconazole (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activated T cell proliferation (ISO)

cell adhesion (IEA)

cell-cell adhesion (IBA)

cell-cell adhesion mediated by integrin (IEA,ISO)

heterotypic cell-cell adhesion (IEA,ISO)

integrin-mediated signaling pathway (IBA,IEA)

Cellular Component

cell surface (IBA)

integrin alphaD-beta2 complex (IEA,ISO)

integrin complex (IBA,IEA)

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

cell adhesion receptor activity (IEA,ISO)

metal ion binding (IEA)

protein-containing complex binding (IPI)

signaling receptor activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

integrin mediated signaling pathway (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Integrins: bidirectional, allosteric signaling machines.	Hynes RO Cell 2002 Sep 20;110(6):673-87.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	A seven-gene prognostic model related to immune checkpoint PD-1 revealing overall survival in patients with lung adenocarcinoma.	Niu W and Jiang L, Math Biosci Eng. 2021 Jul 13;18(5):6136-6154. doi: 10.3934/mbe.2021307.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	During differentiation of the monocytic cell line U937, Pur alpha mediates induction of the CD11c beta 2 integrin gene promoter.	Shelley CS, etal., J Immunol 2002 Apr 15;168(8):3887-93.
11.	The integrins.	Takada Y, etal., Genome Biol. 2007;8(5):215.
12.	Characterization of the rat leukocyte integrin, CD11/CD18, by the use of LFA-1 subunit-specific monoclonal antibodies.	Tamatani T, etal., Eur J Immunol. 1991 Mar;21(3):627-33.

Additional References at PubMed

PMID:15210787	PMID:20563599	PMID:21145887	PMID:21508205	PMID:22068125

Genomics

Comparative Map Data

Itgad
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	192,190,204 - 192,218,864 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	192,190,204 - 192,218,864 (+)	Ensembl				GRCr8
mRatBN7.2	1	182,759,762 - 182,788,422 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	182,759,740 - 182,788,161 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	191,110,263 - 191,138,916 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	198,296,358 - 198,325,011 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	190,966,810 - 190,995,472 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	199,595,968 - 199,623,931 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	199,495,298 - 199,623,960 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	206,632,107 - 206,669,878 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	187,436,291 - 187,464,212 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	180,405,943 - 180,434,140 (+)	NCBI		Celera
RGSC_v3.1	1	187,586,171 - 187,614,093 (+)	NCBI
Cytogenetic Map	1	q37	NCBI

ITGAD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	31,393,335 - 31,426,505 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	31,393,335 - 31,426,505 (+)	Ensembl			hg38	GRCh38
GRCh37	16	31,404,656 - 31,437,826 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	31,312,134 - 31,345,327 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	28,870,558 - 28,903,646 (-)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	28,964,899 - 28,998,212 (+)	NCBI		HuRef
CHM1_1	16	32,723,321 - 32,756,513 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	31,780,736 - 31,813,905 (+)	NCBI		T2T-CHM13v2.0

Itgad
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	127,773,105 - 127,822,988 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	127,753,548 - 127,822,988 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	128,173,933 - 128,205,504 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	128,154,376 - 128,223,816 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	135,317,460 - 135,349,018 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	127,965,115 - 127,996,645 (+)	NCBI		MGSCv36	mm8
Celera	7	128,007,533 - 128,041,159 (+)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	70.0	NCBI

Itgad
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955493	8,233,098 - 8,260,613 (+)	NCBI	ChiLan1.0	ChiLan1.0

ITGAD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	34,592,155 - 34,635,352 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	39,393,576 - 39,436,777 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	23,539,562 - 23,572,705 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	31,764,268 - 31,797,249 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	31,724,113 - 31,797,249 (+)	Ensembl			panPan2	panpan1.1

LOC607096
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	16,860,230 - 16,886,249 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	18,463,618 - 18,480,963 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	16,985,424 - 17,011,496 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	6	16,788,550 - 16,814,600 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	16,707,725 - 16,733,766 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	17,019,621 - 17,045,674 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Itgad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	125,625,814 - 125,654,013 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	8,382,942 - 8,411,350 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	8,382,942 - 8,412,486 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ITGAD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	17,136,177 - 17,169,667 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	17,136,161 - 17,169,776 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	17,401,193 - 17,420,157 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ITGAD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	28,095,341 - 28,128,498 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	1,312,447 - 1,345,990 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Itgad
247 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	30
Count of miRNA genes:	29
Interacting mature miRNAs:	30
Transcripts:	ENSRNOT00000026855
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	153679879	198679879	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	177339686	222339686	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	181059071	226059071	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	181059071	226059071	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	153679879	205813246	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	182039247	227039247	Rat
8694166	Bw147	Body weight QTL 147	6.83	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	1	153788989	198788989	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	183564652	228564652	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	160573753	210707719	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	181059071	226059071	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	139442053	223964440	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	160573753	210707719	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	165278545	210278545	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	127329268	206393015	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	161077990	206077990	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	181059071	226059071	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	168063662	213063662	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	159894717	207261263	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	109493780	193400781	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	163992710	208992710	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	182535316	227535316	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	155359438	194575574	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	181059071	226059071	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	160574007	235238518	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	181059071	226059071	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	162753891	207753891	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	180739993	225739993	Rat
61378	Bp43	Blood pressure QTL 43	22.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	191177449	205813246	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	191190115	223964326	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	172718770	228180370	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	175967553	200707874	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	178547286	206690557	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	139442053	223964440	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	185979875	230979875	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	210707719	Rat
1576310	Schws2	Schwannoma susceptibility QTL 2		0.029	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	1	153788989	198788989	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	165707719	210707719	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	173363824	227535316	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	132966869	206393015	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	191260175	236260175	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2325727	Pia41	Pristane induced arthritis QTL 41			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	188241285	233241285	Rat
7411599	Foco11	Food consumption QTL 11	18.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	1	153788989	198788989	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	210707719	Rat
2325725	Eae31	Experimental allergic encephalomyelitis QTL 31			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	188241285	197807511	Rat
631670	Iddm10	Insulin dependent diabetes mellitus QTL 10	1.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	183564652	205813246	Rat

Markers in Region

RH132904

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	182,788,162 - 182,788,377 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	199,623,672 - 199,623,886	NCBI	Rnor6.0
Rnor_5.0	1	206,669,619 - 206,669,833	UniSTS	Rnor5.0
RGSC_v3.4	1	187,464,214 - 187,464,428	UniSTS	RGSC3.4
Celera	1	180,434,142 - 180,434,356	UniSTS
Cytogenetic Map	1	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	12	52	121	57	60	41	86	41	283	159	11	109	65	73	19	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF021334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000085336 ⟹ ENSRNOP00000071107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	192,190,204 - 192,218,864 (+)	Ensembl
mRatBN7.2 Ensembl	1	182,759,740 - 182,788,161 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094184 ⟹ ENSRNOP00000081657

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	192,191,578 - 192,218,864 (+)	Ensembl
mRatBN7.2 Ensembl	1	182,761,136 - 182,788,161 (+)	Ensembl

RefSeq Acc Id:

NM_031691 ⟹ NP_113879

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	192,190,204 - 192,218,864 (+)	NCBI
mRatBN7.2	1	182,759,762 - 182,788,422 (+)	NCBI
Rnor_6.0	1	199,596,024 - 199,623,670 (+)	NCBI
Rnor_5.0	1	206,632,107 - 206,669,878 (+)	NCBI
RGSC_v3.4	1	187,436,291 - 187,464,212 (+)	RGD
Celera	1	180,405,943 - 180,434,140 (+)	RGD

Sequence:

show sequence

ATGGCCGGTGGAGTTGTGATCCTCCTGTGTGGCTGGGTCCTGGCTTCCTGTCATGGGTCTAACC
TGGATGTGGAGGAACCCATCGTGTTCAGAGAGGATGCAGCCAGCTTTGGACAGACTGTGGTGCA
GTTTGGTGGATCTCGACTCGTGGTGGGAGCCCCTCTGGAGGCGGTGGCAGTCAACCAAACAGGA
CGGTTGTATGACTGTGCACCTGCCACTGGCATGTGCCAGCCCATCGTACTGCGCAGTCCCCTAG
AGGCAGTGAACATGTCCCTGGGCCTGTCTCTGGTGACTGCCACCAATAACGCCCAGTTGCTGGC
TTGTGGTCCAACTGCACAGAGAGCTTGTGTGAAGAACATGTATGCGAAAGGTTCCTGCCTCCTT
CTCGGCTCCAGCTTGCAGTTCATCCAGGCAGTCCCTGCCTCCATGCCAGAGTGTCCAAGACAAG
AGATGGACATTGCTTTCCTGATTGATGGTTCTGGCAGCATTAACCAAAGGGACTTTGCCCAGAT
GAAGGACTTTGTCAAAGCTTTGATGGGAGAGTTTGCGAGCACCAGCACCTTGTTCTCCCTGATG
CAATACTCGAACATCCTGAAGACCCATTTTACCTTCACTGAATTCAAGAACATCCTGGACCCTC
AGAGCCTGGTGGATCCCATTGTCCAGCTGCAAGGCCTGACCTACACAGCCACAGGCATCCGGAC
AGTGATGGAAGAGCTATTTCATAGCAAGAATGGGTCCCGTAAAAGTGCCAAGAAGATCCTCCTT
GTCATCACAGATGGGCAGAAATACAGAGACCCCCTGGAGTATAGTGATGTCATTCCCGCCGCAG
ACAAAGCTGGCATCATTCGTTATGCTATTGGGGTGGGAGATGCCTTCCAGGAGCCCACTGCCCT
GAAGGAGCTGAACACCATTGGCTCAGCTCCCCCACAGGACCACGTGTTCAAGGTAGGCAACTTT
GCAGCACTTCGCAGCATCCAGAGGCAACTTCAGGAGAAAATCTTCGCCATTGAGGGAACTCAAT
CAAGGTCAAGTAGTTCCTTTCAGCACGAGATGTCACAAGAAGGTTTCAGTTCAGCTCTCACATC
GGATGGACCCGTTCTGGGGGCCGTGGGAAGCTTCAGCTGGTCCGGAGGTGCCTTCTTATATCCC
CCAAATACGAGACCCACCTTTATCAACATGTCTCAGGAGAATGTGGACATGAGAGACTCCTACC
TGGGTTACTCCACCGCAGTGGCCTTTTGGAAGGGGGTTCACAGCCTGATCCTGGGGGCCCCGCG
TCACCAGCACACGGGGAAGGTTGTCATCTTTACCCAGGAAGCCAGGCATTGGAGGCCCAAGTCT
GAAGTCAGAGGGACACAGATCGGCTCCTACTTCGGGGCCTCTCTCTGTTCTGTGGACGTGGATA
GAGATGGCAGCACYGACCTGGTCCTGATCGGAGCCCCCCATTACTATGAGCAGACCCGAGGGGG
GCAGGTCTCAGTGTTCCCCGTGCCCGGTGTGAGGGGCAGGTGGCAGTGTGAGGCCACCCTCCAC
GGGGAGCAGGGCCATCCTTGGGGCCGCTTTGGGGTGGCTCTGACAGTGCTGGGGGACGTAAACG
GGGACAATCTGGCAGACGTGGCTATTGGTGCCCCTGGAGAGGAGGAGAGCAGAGGTGCTGTCTA
CATATTTCATGGAGCCTCGAGACTGGAGATCATGCCCTCACCCAGCCAGCGGGTCACTGGCTCC
CAGCTCTCCCTGAGACTGCAGTATTTTGGGCAGTCATTGAGTGGGGGTCAGGACCTTACACAGG
ATGGCCTGGTGGACCTGGCCGTGGGAGCCCAGGGGCACGTACTGCTGCTCAGGAGTCTGCCTCT
GCTGAAAGTGGAGCTCTCCATAAGATTCGCCCCCATGGAGGTGGCAAAGGCTGTGTACCAGTGC
TGGGAAAGGACTCCCACTGTCCTCGAAGCTGGAGAGGCCACTGTCTGTCTCACTGTCCACAAAG
GCTCACCTGACCTGTTAGGTAATGTCCAAGGCTCTGTCAGGTATGATCTGGCGTTAGATCCGGG
CCGCCTGATTTCTCGTGCCATTTTTGATGAGACTAAGAACTGCACTTTGACGGGAAGGAAGACT
CTGGGGCTTGGTGATCACTGCGAAACAGTGAAGCTGCTTTTGCCGGACTGTGTGGAAGATGCAG
TGAGCCCTATCATCCTGCGCCTCAACTTTTCCCTGGTGAGAGACTCTGCTTCACCCAGGAACCT
GCATCCTGTGCTGGCTGTGGGCTCACAAGACCACATAACTGCTTCTCTGCCGTTTGAGAAGAAC
TGTAAGCAAGAACTCCTGTGTGAGGGGGACCTGGGCATCAGCTTTAACTTCTCAGGCCTGCAGG
TCTTGGTGGTGGGAGGCTCCCCAGAGCTCACTGTGACAGTCACTGTGTGGAATGAGGGTGAGGA
CAGCTATGGAACTTTAGTCAAGTTCTACTACCCAGCAGGGCTATCTTACCGACGGGTAACAGGG
ACTCAGCAACCTCATCAGTACCCACTACGCTTGGCCTGTGAGGCTGAGCCCGCTGCCCAGGAGG
ACCTGAGGAGCAGCAGCTGTAGCATTAATCACCCCATCTTCCGAGAAGGTGCAAAGACCACCTT
CATGATCACATTCGATGTCTCCTACAAGGCCTTCCTAGGAGACAGGTTGCTTCTGAGGGCCAAA
GCCAGCAGTGAGAATAATAAGCCTGATACCAACAAGACTGCCTTCCAGCTGGAGCTCCCAGTGA
AGTACACCGTCTATACCCTGATCAGTAGGCAAGAAGATTCCACCAACCATGTCAACTTTTCATC
TTCCCACGGGGGGAGAAGGCAAGAAGCCGCACATCGCTATCGTGTGAATAACCTGAGTCCACTG
AAGCTGGCCGTCAGAGTTAACTTCTGGGTCCCTGTCCTTCTGAACGGTGTGGCTGTGTGGGACG
TGACTCTGAGCAGCCCAGCACAGGGTGTCTCCTGCGTGTCCCAGATGAAACCTCCTCAGAATCC
CGACTTTCTGACCCAGATTCAGAGACGTTCTGTGCTGGACTGCTCCATTGCTGACTGCCTGCAC
TTCCGCTGTGACATCCCCTCCTTGGACATCCAGGATGAACTTGACTTCATTCTGAGGGGCAACC
TCAGCTTCGGCTGGGTCAGTCAGACATTGCAGGAAAAGGTGTTGCTTGTGAGTGAGGCTGAAAT
CACTTTCGACACATCTGTGTACTCCCAGCTGCCAGGACAGGAGGCATTTCTGAGAGCCCAGGTG
GAGACAACGTTAGAAGAATACGTGGTCTATGAGCCCATCTTCCTCGTGGCGGGCAGCTCGGTGG
GAGGTCTGCTGTTACTGGCTCTCATCACAGTGGTACTGTACAAGCTTGGCTTCTTCAAACGTCA
GTACAAAGAAATGCTGGACGGCAAGGCTGCAGATCCTGTCACAGCCGGCCAGGCAGATTTCGGC
TGTGAGACTCCTCCATATCTCGTGAGCTAGGAATCCACTCTCCTGCCTATCTCTGCAATGAAGA
TTGGTCCTGCCTATGAGTCTACTGGCATGGGAACGAGT

hide sequence

RefSeq Acc Id:

XM_039089549 ⟹ XP_038945477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	192,196,062 - 192,218,864 (+)	NCBI
mRatBN7.2	1	182,766,029 - 182,788,422 (+)	NCBI

RefSeq Acc Id:

XM_039089555 ⟹ XP_038945483

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	192,195,250 - 192,218,864 (+)	NCBI
mRatBN7.2	1	182,765,391 - 182,788,422 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_113879	(Get FASTA)	NCBI Sequence Viewer
	XP_038945477	(Get FASTA)	NCBI Sequence Viewer
	XP_038945483	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF21241	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071107
GenBank Protein	Q9QYE7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_113879 ⟸ NM_031691
- Peptide Label:	precursor
- UniProtKB:	A6I9Y5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGGVVILLCGWVLASCHGSNLDVEEPIVFREDAASFGQTVVQFGGSRLVVGAPLEAVAVNQTG RLYDCAPATGMCQPIVLRSPLEAVNMSLGLSLVTATNNAQLLACGPTAQRACVKNMYAKGSCLL LGSSLQFIQAVPASMPECPRQEMDIAFLIDGSGSINQRDFAQMKDFVKALMGEFASTSTLFSLM QYSNILKTHFTFTEFKNILDPQSLVDPIVQLQGLTYTATGIRTVMEELFHSKNGSRKSAKKILL VITDGQKYRDPLEYSDVIPAADKAGIIRYAIGVGDAFQEPTALKELNTIGSAPPQDHVFKVGNF AALRSIQRQLQEKIFAIEGTQSRSSSSFQHEMSQEGFSSALTSDGPVLGAVGSFSWSGGAFLYP PNTRPTFINMSQENVDMRDSYLGYSTAVAFWKGVHSLILGAPRHQHTGKVVIFTQEARHWRPKS EVRGTQIGSYFGASLCSVDVDRDGSTDLVLIGAPHYYEQTRGGQVSVFPVPGVRGRWQCEATLH GEQGHPWGRFGVALTVLGDVNGDNLADVAIGAPGEEESRGAVYIFHGASRLEIMPSPSQRVTGS QLSLRLQYFGQSLSGGQDLTQDGLVDLAVGAQGHVLLLRSLPLLKVELSIRFAPMEVAKAVYQC WERTPTVLEAGEATVCLTVHKGSPDLLGNVQGSVRYDLALDPGRLISRAIFDETKNCTLTGRKT LGLGDHCETVKLLLPDCVEDAVSPIILRLNFSLVRDSASPRNLHPVLAVGSQDHITASLPFEKN CKQELLCEGDLGISFNFSGLQVLVVGGSPELTVTVTVWNEGEDSYGTLVKFYYPAGLSYRRVTG TQQPHQYPLRLACEAEPAAQEDLRSSSCSINHPIFREGAKTTFMITFDVSYKAFLGDRLLLRAK ASSENNKPDTNKTAFQLELPVKYTVYTLISRQEDSTNHVNFSSSHGGRRQEAAHRYRVNNLSPL KLAVRVNFWVPVLLNGVAVWDVTLSSPAQGVSCVSQMKPPQNPDFLTQIQRRSVLDCSIADCLH FRCDIPSLDIQDELDFILRGNLSFGWVSQTLQEKVLLVSEAEITFDTSVYSQLPGQEAFLRAQV ETTLEEYVVYEPIFLVAGSSVGGLLLLALITVVLYKLGFFKRQYKEMLDGKAADPVTAGQADFG CETPPYLVS hide sequence

RefSeq Acc Id:	XP_038945483 ⟸ XM_039089555
- Peptide Label:	isoform X1
- UniProtKB:	A6I9Y5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945477 ⟸ XM_039089549
- Peptide Label:	isoform X1
- UniProtKB:	A6I9Y5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081657 ⟸ ENSRNOT00000094184

Ensembl Acc Id:

ENSRNOP00000071107 ⟸ ENSRNOT00000085336

Protein Domains

VWFA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QYE7-F1-model_v2	AlphaFold	Q9QYE7	1-1161	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:71075	AgrOrtholog
BioCyc Gene	G2FUF-57311	BioCyc
Ensembl Genes	ENSRNOG00000019728	Ensembl
	ENSRNOG00000068399	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000085336	ENTREZGENE
Gene3D-CATH	2.130.10.130	UniProtKB/Swiss-Prot
	3.40.50.410	UniProtKB/Swiss-Prot
	Bicelle-embedded integrin alpha(iib) transmembrane segment	UniProtKB/Swiss-Prot
	Integrin domains. Chain A, domain 2	UniProtKB/Swiss-Prot
	ntegrin, alpha v. Chain A, domain 3	UniProtKB/Swiss-Prot
	ntegrin, alpha v. Chain A, domain 4	UniProtKB/Swiss-Prot
InterPro	FG-GAP	UniProtKB/Swiss-Prot
	Int_alpha_beta-p	UniProtKB/Swiss-Prot
	Integrin_alpha	UniProtKB/Swiss-Prot
	Integrin_alpha-2	UniProtKB/Swiss-Prot
	Integrin_alpha_C_CS	UniProtKB/Swiss-Prot
	Integrin_alpha_Ig-like_2	UniProtKB/Swiss-Prot
	Integrin_alpha_N	UniProtKB/Swiss-Prot
	Integrin_dom_sf	UniProtKB/Swiss-Prot
	ITGAX-like_Ig_3	UniProtKB/Swiss-Prot
	VWF_A	UniProtKB/Swiss-Prot
	vWFA_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:64350	UniProtKB/Swiss-Prot
NCBI Gene	64350	ENTREZGENE
PANTHER	INTEGRIN ALPHA	UniProtKB/Swiss-Prot
	INTEGRIN ALPHA-D	UniProtKB/Swiss-Prot
Pfam	FG-GAP	UniProtKB/Swiss-Prot
	Integrin_A_Ig_2	UniProtKB/Swiss-Prot
	Integrin_alpha	UniProtKB/Swiss-Prot
	Integrin_alpha2	UniProtKB/Swiss-Prot
	ITGAX-like_Ig_3	UniProtKB/Swiss-Prot
	VWA	UniProtKB/Swiss-Prot
PhenoGen	Itgad	PhenoGen
PRINTS	INTEGRINA	UniProtKB/Swiss-Prot
	VWFADOMAIN	UniProtKB/Swiss-Prot
PROSITE	FG_GAP	UniProtKB/Swiss-Prot
	INTEGRIN_ALPHA	UniProtKB/Swiss-Prot
	VWFA	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000019728	RatGTEx
	ENSRNOG00000068399	RatGTEx
SMART	Int_alpha	UniProtKB/Swiss-Prot
	VWA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF53300	UniProtKB/Swiss-Prot
	SSF69179	UniProtKB/Swiss-Prot
	SSF69318	UniProtKB/Swiss-Prot
UniProt	A0A8I5Y8A4_RAT	UniProtKB/TrEMBL
	A0A8I5ZSN9_RAT	UniProtKB/TrEMBL
	A0A8I5ZVY4_RAT	UniProtKB/TrEMBL
	A0A8I6A686_RAT	UniProtKB/TrEMBL
	A0ABK0KZS1_RAT	UniProtKB/TrEMBL
	A6I9Y5	ENTREZGENE, UniProtKB/TrEMBL
	F1M8G4_RAT	UniProtKB/TrEMBL
	ITAD_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-23	Itgad	integrin subunit alpha D	Itgad	integrin, alpha D	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Itgad	integrin, alpha D			Symbol and Name updated	1299863	APPROVED
2002-07-09	Itgax	integrin alpha X			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations