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Gene: Rabep1 (rabaptin, RAB GTPase binding effector protein 1) Rattus norvegicus

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Symbol:

Rabep1

Name:

rabaptin, RAB GTPase binding effector protein 1

RGD ID:

708568

Description:

Predicted to enable protein domain specific binding activity and protein homodimerization activity. Predicted to be involved in Golgi to plasma membrane transport; protein localization to ciliary membrane; and regulation of postsynaptic neurotransmitter receptor internalization. Is active in presynaptic cytosol. Orthologous to human RABEP1 (rabaptin, RAB GTPase binding effector protein 1); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC54190; rab GTPase-binding effector protein 1; rabaptin 5; rabaptin-5; rabaptin-5alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Candidate Gene For:

Bmd4

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	56,064,742 - 56,168,778 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	56,064,753 - 56,166,177 (+)	Ensembl				GRCr8
mRatBN7.2	10	55,566,156 - 55,667,595 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	55,566,185 - 55,665,973 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	60,246,541 - 60,345,682 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	59,735,063 - 59,834,201 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	55,234,142 - 55,333,286 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	57,462,272 - 57,579,901 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	57,462,447 - 57,579,898 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	57,207,704 - 57,326,469 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	57,746,747 - 57,847,498 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	54,712,478 - 54,811,806 (+)	NCBI		Celera
RGSC_v3.1	10	57,760,369 - 57,861,121 (+)	NCBI
Cytogenetic Map	10	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

teratoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

coumarin (ISO)

cyclosporin A (ISO)

diazinon (EXP)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dieldrin (EXP)

dorsomorphin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

geldanamycin (ISO)

gentamycin (EXP)

glyphosate (EXP)

hypochlorous acid (ISO)

imidacloprid (EXP)

ivermectin (ISO)

methamphetamine (EXP)

methapyrilene (ISO)

methotrexate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nimesulide (EXP)

oxaliplatin (EXP)

PCB138 (EXP)

piroxicam (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thiabendazole (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

endocytosis (IEA)

Golgi to plasma membrane transport (IBA,IEA,ISO,ISS)

protein localization to ciliary membrane (IEA,ISO,ISS)

protein transport (IEA)

regulation of postsynaptic neurotransmitter receptor internalization (IEA,ISO)

signal transduction (IEA)

vesicle-mediated transport (IEA,ISO,ISS)

Cellular Component

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

cytosol (IEA,ISO)

early endosome (IEA)

endocytic vesicle (IBA,IEA,ISO,ISS)

endosome (IBA,IEA,ISO,ISS)

glutamatergic synapse (IEA,ISO)

presynaptic cytosol (IDA,IEP)

protein-containing complex (IEA,ISO)

recycling endosome (IEA)

Molecular Function

growth factor activity (IEA)

GTPase activator activity (IEA)

protein binding (IPI,ISO)

protein domain specific binding (IEA,ISO)

protein homodimerization activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Divalent interaction of the GGAs with the Rabaptin-5-Rabex-5 complex.	Mattera R, etal., EMBO J 2003 Jan 2;22(1):78-88.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	The neuronal growth-associated protein GAP-43 interacts with rabaptin-5 and participates in endocytosis.	Neve RL, etal., J Neurosci. 1998 Oct 1;18(19):7757-67.
6.	Physical and functional interaction of KV10.1 with Rabaptin-5 impacts ion channel trafficking.	Ninkovic M, etal., FEBS Lett. 2012 Sep 21;586(19):3077-84. doi: 10.1016/j.febslet.2012.07.055. Epub 2012 Jul 25.
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12767220	PMID:12890772	PMID:15378032	PMID:15629704	PMID:20682791	PMID:22871113	PMID:25405894	PMID:28131823	PMID:30053369

Genomics

Comparative Map Data

Rabep1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	56,064,742 - 56,168,778 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	56,064,753 - 56,166,177 (+)	Ensembl				GRCr8
mRatBN7.2	10	55,566,156 - 55,667,595 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	55,566,185 - 55,665,973 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	60,246,541 - 60,345,682 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	59,735,063 - 59,834,201 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	55,234,142 - 55,333,286 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	57,462,272 - 57,579,901 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	57,462,447 - 57,579,898 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	57,207,704 - 57,326,469 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	57,746,747 - 57,847,498 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	54,712,478 - 54,811,806 (+)	NCBI		Celera
RGSC_v3.1	10	57,760,369 - 57,861,121 (+)	NCBI
Cytogenetic Map	10	q24	NCBI

RABEP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	5,282,284 - 5,386,340 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	5,282,259 - 5,386,340 (+)	Ensembl			hg38	GRCh38
GRCh37	17	5,185,579 - 5,289,660 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	5,126,282 - 5,229,856 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	5,126,308 - 5,229,855	NCBI
Celera	17	5,202,076 - 5,305,503 (+)	NCBI		Celera
Cytogenetic Map	17	p13.2	NCBI
HuRef	17	5,076,120 - 5,179,776 (+)	NCBI		HuRef
CHM1_1	17	5,194,871 - 5,298,790 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	5,176,049 - 5,280,075 (+)	NCBI		T2T-CHM13v2.0

Rabep1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	70,735,553 - 70,833,931 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	70,735,604 - 70,833,931 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	70,844,724 - 70,943,105 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	70,844,778 - 70,943,105 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	70,658,265 - 70,756,607 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	70,661,120 - 70,757,135 (+)	NCBI		MGSCv36	mm8
Celera	11	78,399,194 - 78,497,475 (+)	NCBI		Celera
Cytogenetic Map	11	B3- B4	NCBI
cM Map	11	43.21	NCBI

Rabep1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	10,613,861 - 10,747,255 (+)	Ensembl
ChiLan1.0	NW_004955467	10,613,671 - 10,748,122 (+)	NCBI	ChiLan1.0	ChiLan1.0

RABEP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	12,892,660 - 12,996,355 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	14,860,602 - 14,964,572 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	5,330,477 - 5,434,250 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	5,344,966 - 5,426,160 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	5,344,966 - 5,426,160 (+)	Ensembl			panPan2	panpan1.1

RABEP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	31,390,873 - 31,442,585 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	31,391,576 - 31,491,506 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	31,528,879 - 31,630,006 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	31,495,500 - 31,595,348 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	31,495,489 - 31,595,357 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	31,461,067 - 31,562,173 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	31,419,943 - 31,521,587 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	31,596,383 - 31,697,964 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rabep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	53,419,365 - 53,483,299 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936677	2,417,679 - 2,512,868 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936677	2,417,676 - 2,481,587 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RABEP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	51,602,226 - 51,858,206 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	51,602,228 - 51,868,180 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	53,899,560 - 53,926,902 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RABEP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	4,670,448 - 4,795,309 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	4,670,499 - 4,792,689 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666059	16,792,952 - 16,904,507 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rabep1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	9,060,895 - 9,191,767 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624786	9,060,953 - 9,191,767 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rabep1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	50,466,718 - 50,569,706 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rabep1
895 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	118
Count of miRNA genes:	88
Interacting mature miRNAs:	103
Transcripts:	ENSRNOT00000041443
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	47489017	69161158	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	52162433	75582749	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1578762	Toxo1	Toxoplasma gondii resistance QTL 1			brain integrity trait (VT:0010579)	percentage of study population displaying Toxoplasma gondii brain cysts at a point in time (CMO:0002028)	10	52699004	59876693	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
2306787	Ean3	Experimental allergic neuritis QTL 3	3.1		nervous system integrity trait (VT:0010566)	body weight loss (CMO:0001399)	10	54296227	67476781	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
1354585	Eae18a	Experimental allergic encephalomyelitis QTL 18a	7.5	0.0004	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	54296227	58944345	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

RH131888

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	55,665,256 - 55,665,444 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	57,579,182 - 57,579,369	NCBI	Rnor6.0
Rnor_5.0	10	57,324,131 - 57,324,318	UniSTS	Rnor5.0
RGSC_v3.4	10	57,846,782 - 57,846,969	UniSTS	RGSC3.4
Celera	10	54,811,090 - 54,811,277	UniSTS
Cytogenetic Map	10	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_594720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D85844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U70777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041443 ⟹ ENSRNOP00000050017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	56,093,100 - 56,166,177 (+)	Ensembl
mRatBN7.2 Ensembl	10	55,566,332 - 55,665,973 (+)	Ensembl
Rnor_6.0 Ensembl	10	57,462,447 - 57,579,898 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097255 ⟹ ENSRNOP00000078275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	56,064,963 - 56,166,177 (+)	Ensembl
mRatBN7.2 Ensembl	10	55,566,378 - 55,665,973 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105504 ⟹ ENSRNOP00000085606

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	56,064,753 - 56,166,177 (+)	Ensembl
mRatBN7.2 Ensembl	10	55,566,332 - 55,665,973 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107871 ⟹ ENSRNOP00000093398

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	56,064,756 - 56,164,560 (+)	Ensembl
mRatBN7.2 Ensembl	10	55,594,515 - 55,665,973 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109255 ⟹ ENSRNOP00000090309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	56,064,753 - 56,166,177 (+)	Ensembl
mRatBN7.2 Ensembl	10	55,566,185 - 55,665,969 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128672 ⟹ ENSRNOP00000104261

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	56,064,753 - 56,166,177 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137271 ⟹ ENSRNOP00000100373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	56,064,753 - 56,166,177 (+)	Ensembl

RefSeq Acc Id:

NM_019124 ⟹ NP_061997

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	56,064,917 - 56,164,557 (+)	NCBI
mRatBN7.2	10	55,566,332 - 55,665,973 (+)	NCBI
Rnor_6.0	10	57,462,447 - 57,579,898 (+)	NCBI
Rnor_5.0	10	57,207,704 - 57,326,469 (+)	NCBI
RGSC_v3.4	10	57,746,747 - 57,847,498 (+)	RGD
Celera	10	54,712,478 - 54,811,806 (+)	RGD

Sequence:

show sequence

ACGCTGCTTCCCCGCCCATCCCCGTTCTCCAGGCCGCCCACTGGCCATGGCGCAGCCGGGCCCG
GCTCCCCAGCCTGACGTTTCTCTTCAGCAACGGGTAGCAGAATTGGAAAAAATTAATGCAGAAT
TTTTACGTGCACAGCAGCAGCTTGAGCAAGAATTTAATCAAAAGAGAGCAAAATTTAAGGAGCT
GTATTTGGCTAAAGAGGAGGATCTGAAGCGGCAAAATGCAGTATTGCAAGCTGCGCAGGATGAC
TTGGGTCACCTTCGGACACAGCTGTGGGAGGCGCAGGCAGAAATGGAGAATATCAAGGCGATCG
CCACAGTCTCTGAGAACACTAAGCAAGAAGCTATAGATGAAGTTAAAAGGCAGTGGAGAGAAGA
AGTTGCTTCACTTCAGGCTGTAATGAAAGAGACTGTGCGTGACTATGAGCATCAGTTTCACCTG
AGGCTGGAGCAGGAACGAGCGCAGTGGGCACAGTATCGAGAGTCTGCAGACCGGGAGATAGCTG
ACCTAAGAAGAAGGTTGTCTGAAGGTCAAGAGGAAGAAAATTTAGAAAATGAAATGAAAAAGGC
CCAAGAGGATGCCGAGAAGCTTCGCTCTGTCGTGATGCCCATGGAGAAGGAAATTGCAGCCCTG
AAAGATAAACTGACAGAAGCTGAAGACAAGATTAAAGAGCTGGAGGCCTCAAAGGTTAAGGAAC
TGAATCATTATCTGGAGGCCGAGAAGTCTTGCAGGACTGATCTGGAGATGTATGTAGCTGTTTT
GAACACCCAGAAATCTGTTCTACAGGAAGATGCTGAGAAATTGAGGAAAGAACTGCATGAAGTT
TGCCATCTCTTGGAGCAAGAGCGACAACAACACAACCAGTTAAAACACACGTGGCAGAAGGCCA
ACGACCAGTTTTTGGAATCTCAGCGCTTGCTGATGAGAGACATGCAGCGAATGGAGATCGTGTT
AACTTCAGAACAGCTACGACAAGTTGAAGAACTGAAGAAGAAAGATCAGGAGGAGGATGAACAA
CAAAGGATCAATAAGGGAAAAGATAACAAGAAAATAGACACTGAAGAAGAAGTAAAAATACCAG
TAGTATGTGCTTTAACTCAAGAAGAATCTTCAACCCCACTATCAAATGAAGAGGAGCATTTAGA
CAGCACCCATGGGTCAGTCCATTCCTTAGATGCAGACTTGCTGTTACCATCTGGAGATCCATTC
AGTAAATCGGACAATGACATGTTTAAAGAGGGACTCCGGAGAGCTCAGTCTACAGACAGCTTGG
GAACCTCAAGCTCATTGCAATCCAAAGCTTTAGGCTATAACTACAAAGCAAAATCTGCTGGAAA
TTTGGATGAGTCGGATTTTGGACCACTGGTTGGAGCAGATTCTGTGTCTGAGAACTTTGATACT
GTGTCCCTTGGGTCACTGCAGATGCCAAGTGGATTTATGTTAACCAAAGATCAAGAAAGAGCAA
TTAAGGCAATGACACCTGAACAGGAGGAGACAGCATCCCTCCTCTCAAGTGTCACACAGGGTAT
GGAGAGTGCATATGTCTCTCCTAGTGGTTACCGCTTAGTGAGTGAAACGGAATGGAATCTCCTG
CAGAAAGAGGTACATAATGCTGGAAATAAGCTTGGTAGACGTTGTGATATGTGTTCCAATTATG
AAAAACAGTTACAAGGAATTCAGATTCAGGAAGCTGAGACAAGAGACCAGGTGAAAAAACTGCA
GTTAATGCTCAGGCAAGCTAATGACCAGCTAGAGAAGACAATGAAAGAGAAACAGGAGCTAGAG
GACTTCCTCAGGCAGAGTGCCGAGGACTCAAGCCACCAGATATCTGCACTTGTTTTAAGAGCCC
AAGCCTCTGAGGTATTACTTGAAGAGTTACAACAGAGTTTTTCCCAAGCAAAGAGGGATGTTCA
GGAGCAGATGGCAGTGCTGATGCAGTCACGTGAACAGGTCTCAGAAGAGCTGGTGAGGTTACAG
AAAGACAATGACAGCCTCCAGGGAAAGCATAGCTTGCATGTGTCATTACAACTAGCAGAAGACT
TCATTCTTCCAGATACTGTGCAGGTGCTCCGGGAACTGGTTTTAAAATATCGTGAGAACATTGT
TCATGTGCGGACAGCAGCAGACCACATGGAAGAGAAGCTGAAGGCTGAAATACTTTTTCTAAAA
GAGCAAATTCAGGCGGAACAGTGTTTAAAAGAAAACCTTGAAGAGACATTACAGCTGGAAATTG
AAAACTGCAAGGAGGAAATAGCTTCCATTTCTAGTCTAAAAGCTGAATTAGAAAGAATAAAAGT
TGAAAAGGGACAGTTGGAATCTACATTAAGAGAGAAGTCGCAACAACTTGAGAGCCTCCAAGAA
ATAAAAGTTAATTTAGAGGAACAGTTAAAGAAGGAAACTGCTGCTAAGGCCACTGTTGAACAGC
TCATGTTTGAAGAGAAGAACAAAGCTCAGAGGTTGCAGACAGAATTAGATGTCAGTGAACAAGT
CCAGAGAGATTTTGTAAAACTTTCTCAGACTCTTCAGGTGCAGTTAGAGAGGATCCGGCAAGCA
GACTCCCTGGAGAGGATCCGGGCAATTCTGAATGATACCAAACTGACAGACATTAACCAGCTCC
CTGAGACATGACACCCTGATGGCAGGATTCTGACCTGCATTTTGGGTTTTTAACTCATCTTTAG
AATAACATTAATTATTATTTAACTCTTAATGGAAGAAGTCACAGCAAAAGGAGGACTGGAGAAA
TGCAGTTCTGGAGGGAGAAGGCTGCTGTGTGCAGGGACAGCCAACAGACGTTTCAAAGGGAACA
CTAATGAGACACTGGACTCGATTCCAACAGGCGTGGGATCAGATTGGGTGCCAGAAAAGTGCTG
TTTCCTTGCCTGCTTCCTCCAGCGTGGACTCTGGAACATAATTCCTGCCATGAAAGCAACTTCC
CAATAGTGTTTGGAATTACGTTTTCTGTTCATACAAACTGGGAGAGAAAAGTTTCTTTCTCCTG
TGGTCTGGGGCTCATCAGTAGCAGTGTTCAGCTAGCAGAGAGGTGTAGTGCGCTGTGTGAGTAT
TTTATATTAAAATGTGGAGTGAGAGCAGGCCATTGGCTATTGATTGTGTTTCCCTTGTTCAATG
CATTTTGTTTCCTTTTTAACCATTCCTTCTATTGGAAGACCTTAAATGCTATTGTAACTTGCTT
GAGAACTATAGGACCATGGCAAACAAAAGCAATTAAAATTAGGAGAATCTGAATCTTTGGCTGA
GGCCAATATATATTATATATATATCAATTTATGGAAAAAAAGCACAAATAACCTTGGAAGCACT
TTGTCTGCACACCATGATGAACTTCCTGGGCCCAAAGGTACCAGGGCAAATAACTGGCACCATC
TACCCTTTCGAAGTGTTTTAGTTACTGGATCAGTGGAAAATAATACTAATAAAACAAGCTATCT
CTTACATCT

hide sequence

RefSeq Acc Id:

XM_006246795 ⟹ XP_006246857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	56,064,742 - 56,168,778 (+)	NCBI
mRatBN7.2	10	55,566,157 - 55,667,595 (+)	NCBI
Rnor_6.0	10	57,462,272 - 57,579,901 (+)	NCBI
Rnor_5.0	10	57,207,704 - 57,326,469 (+)	NCBI

Sequence:

show sequence

CGCACTGCTTATTTCCCGCTGTCAGGATGAGGAGGCGGAGGTCGGCGCTCCGGTCCGTCTCTGC
CCGAGGCTGTGGCGGCGCCAGCGGCTCCAGCCTTAGCGGTTCCTCCCTGGGCGGCGGCGGCCGC
GGCTCGGTCGACGCGTTCTCCGCCAGCTGAGTCCGCCGCAGCCCGGGACGCTGCTTCCCCGCCC
ATCCCCGTTCTCCAGGCCGCCCACTGGCCATGGCGCAGCCGGGCCCGGCTCCCCAGCCTGACGT
TTCTCTTCAGCAACGGGTAGCAGAATTGGAAAAAATTAATGCAGAATTTTTACGTGCACAGCAG
CAGCTTGAGCAAGAATTTAATCAAAAGAGAGCAAAATTTAAGGAGCTGTATTTGGCTAAAGAGG
AGGATCTGAAGCGGCAAAATGCAGTATTGCAAGCTGCGCAGGATGACTTGGGTCACCTTCGGAC
ACAGCTGTGGGAGGCGCAGGCAGAAATGGAGAATATCAAGGCGATCGCCACAGTCTCTGAGAAC
ACTAAGCAAGAAGCTATAGATGAAGTTAAAAGGCAGTGGAGAGAAGAAGTTGCTTCACTTCAGG
CTGTAATGAAAGAGACTGTGCGTGACTATGAGCATCAGTTTCACCTGAGGCTGGAGCAGGAACG
AGCGCAGTGGGCACAGTATCGAGAGTCTGCAGACCGGGAGATAGCTGACCTAAGAAGAAGGTTG
TCTGAAGGTCAAGAGGAAGAAAATTTAGAAAATGAAATGAAAAAGGCCCAAGAGGATGCCGAGA
AGCTTCGCTCTGTCGTGATGCCCATGGAGAAGGAAATTGCAGCCCTGAAAGATAAACTGACAGA
AGCTGAAGACAAGATTAAAGAGCTGGAGGCCTCAAAGGTTAAGGAACTGAATCATTATCTGGAG
GCCGAGAAGTCTTGCAGGACTGATCTGGAGATGTATGTAGCTGTTTTGAACACCCAGAAATCTG
TTCTACAGGAAGATGCTGAGAAATTGAGGAAAGAACTGCATGAAGTTTGCCATCTCTTGGAGCA
AGAGCGACAACAACACAACCAGTTAAAACACACGTGGCAGAAGGCCAACGACCAGTTTTTGGAA
TCTCAGCGCTTGCTGATGAGAGACATGCAGCGAATGGAGATCGTGTTAACTTCAGAACAGCTAC
GACAAGTTGAAGAACTGAAGAAGAAAGATCAGGAGGAGGATGAACAACAAAGGATCAATAAGGG
AAAAGATAACAAGAAAATAGACACTGAAGAAGAAGTAAAAATACCAGTAGTATGTGCTTTAACT
CAAGAAGAATCTTCAACCCCACTATCAAATGAAGAGGAGCATTTAGACAGCACCCATGGGTCAG
TCCATTCCTTAGATGCAGACTTGCTGTTACCATCTGGAGATCCATTCAGTAAATCGGACAATGA
CATGTTTAAAGAGGGACTCCGGAGAGCTCAGTCTACAGACAGCTTGGGAACCTCAAGCTCATTG
CAATCCAAAGCTTTAGGCTATAACTACAAAGCAAAATCTGCTGGAAATTTGGATGAGTCGGATT
TTGGACCACTGGTTGGAGCAGATTCTGTGTCTGAGAACTTTGATACTGTGTCCCTTGGGTCACT
GCAGATGCCAAGTGGATTTATGTTAACCAAAGATCAAGAAAGAGCAATTAAGGCAATGACACCT
GAACAGGAGGAGACAGCATCCCTCCTCTCAAGTGTCACACAGGGTATGGAGAGTGCATATGTCT
CTCCTAGTGGTTACCTCTTAGTGAGTGAAACGGAATGGAATCTCCTGCAGAAAGAGGTGAAAAA
ACTGCAGTTAATGCTCAGGCAAGCTAATGACCAGCTAGAGAAGACAATGAAAGAGAAACAGGAG
CTAGAGGACTTCCTCAGGCAGAGTGCCGAGGACTCAAGCCACCAGATATCTGCACTTGTTTTAA
GAGCCCAAGCCTCTGAGGTATTACTTGAAGAGTTACAACAGAGTTTTTCCCAAGCAAAGAGGGA
TGTTCAGGAGCAGATGGCAGTGCTGATGCAGTCACGTGAACAGGTCTCAGAAGAGCTGGTGAGG
TTACAGAAAGACAATGACAGCCTCCAGGGAAAGCATAGCTTGCATGTGTCATTACAACTAGCAG
AAGACTTCATTCTTCCAGATACTGTGCAGGTGCTCCGGGAACTGGTTTTAAAATATCGTGAGAA
CATTGTTCATGTGCGGACAGCAGCAGACCACATGGAAGAGAAGCTGAAGGCTGAAATACTTTTT
CTAAAAGAGCAAATTCAGGCGGAACAGTGTTTAAAAGAAAACCTTGAAGAGACATTACAGCTGG
AAATTGAAAACTGCAAGGAGGAAATAGCTTCCATTTCTAGTCTAAAAGCTGAATTAGAAAGAAT
AAAAGTTGAAAAGGGACAGTTGGAATCTACATTAAGAGAGAAGTCGCAACAACTTGAGAGCCTC
CAAGAAATAAAAGTTAATTTAGAGGAACAGTTAAAGAAGGAAACTGCTGCTAAGGCCACTGTTG
AACAGCTCATGTTTGAAGAGAAGAACAAAGCTCAGAGGTTGCAGACAGAATTAGATGTCAGTGA
ACAAGTCCAGAGAGATTTTGTAAAACTTTCTCAGACTCTTCAGGTGCAGTTAGAGAGGATCCGG
CAAGCAGACTCCCTGGAGAGGATCCGGGCAATTCTGAATGATACCAAACTGACAGACATTAACC
AGCTCCCTGAGACATGACACCCTGATGGCAGGATTCTGACCTGCATTTTGGGTTTTTAACTCAT
CTTTAGAATAACATTAATTATTATTTAACTCTTAATGGAAGAAGTCACAGCAAAAGGAGGACTG
GAGAAATGCAGTTCTGGAGGGAGAAGGCTGCTGTGTGCAGGGACAGCCAACAGACGTTTCAAAG
GGAACACTAATGAGACACTGGACTCGATTCCAACAGGCGTGGGATCAGATTGGGTGCCAGAAAA
GTGCTGTTTCCTTGCCTGCTTCCTCCAGCGTGGACTCTGGAACATAATTCCTGCCATGAAAGCA
ACTTCCCAATAGTGTTTGGAATTACGTTTTCTGTTCATACAAACTGGGAGAGAAAAGTTTCTTT
CTCCTGTGGTCTGGGGCTCATCAGTAGCAGTGTTCAGCTAGCAGAGAGGTGTAGTGCGCTGTGT
GAGTATTTTATATTAAAATGTGGAGTGAGAGCAGGCCATTGGCTATTGATTGTGTTTCCCTTGC
TCAATGCATTTTGTTTCCTTTTTAACCATTCCTTCTATTGGAAGACCTTAAATGCTATTGTAAC
TTGCTTGAGAACTATAGGACCATGGCAAACAAAAGCAATTAAAATTAGGAGAATCTGAATCTTT
GGCTGAGGCCAATATATATTATATATATATATCAATTTATGGAAAAAAAGCACAAATAACCTTG
GAAGCACTTTGTCTGCACACCATGATGAACTTCCTGGGCCCAAAGGTACCAGGGCAAATAACTG
GCACCATCTACCCTTTCGAAGTGTTTTAGTTACTGGATCAGTGGAAAATAATACTAATAAAACA
AGCTATCTCTGACATCTAGT

hide sequence

RefSeq Acc Id:

XM_006246796 ⟹ XP_006246858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	56,064,742 - 56,168,778 (+)	NCBI
mRatBN7.2	10	55,566,157 - 55,667,595 (+)	NCBI
Rnor_6.0	10	57,462,272 - 57,579,901 (+)	NCBI
Rnor_5.0	10	57,207,704 - 57,326,469 (+)	NCBI

Sequence:

show sequence

CGCACTGCTTATTTCCCGCTGTCAGGATGAGGAGGCGGAGGTCGGCGCTCCGGTCCGTCTCTGC
CCGAGGCTGTGGCGGCGCCAGCGGCTCCAGCCTTAGCGGTTCCTCCCTGGGCGGCGGCGGCCGC
GGCTCGGTCGACGCGTTCTCCGCCAGCTGAGTCCGCCGCAGCCCGGGACGCTGCTTCCCCGCCC
ATCCCCGTTCTCCAGGCCGCCCACTGGCCATGGCGCAGCCGGGCCCGGCTCCCCAGCCTGACGT
TTCTCTTCAGCAACGGGTAGCAGAATTGGAAAAAATTAATGCAGAATTTTTACGTGCACAGCAG
CAGCTTGAGCAAGAATTTAATCAAAAGAGAGCAAAATTTAAGGAGCTGTATTTGGCTAAAGAGG
AGGATCTGAAGCGGCAAAATGCAGTATTGCAAGCTGCGCAGGATGACTTGGGTCACCTTCGGAC
ACAGCTGTGGGAGGCGCAGGCAGAAATGGAGAATATCAAGGCGATCGCCACAGTCTCTGAGAAC
ACTAAGCAAGAAGCTATAGATGAAGTTAAAAGGCAGTGGAGAGAAGAAGTTGCTTCACTTCAGG
CTGTAATGAAAGAGACTGTGCGTGACTATGAGCATCAGTTTCACCTGAGGCTGGAGCAGGAACG
AGCGCAGTGGGCACAGTATCGAGAGTCTGCAGACCGGGAGATAGCTGACCTAAGAAGAAGGTTG
TCTGAAGGTCAAGAGGAAGAAAATTTAGAAAATGAAATGAAAAAGGCCCAAGAGGATGCCGAGA
AGCTTCGCTCTGTCGTGATGCCCATGGAGAAGGAAATTGCAGCCCTGAAAGATAAACTGACAGA
AGCTGAAGACAAGATTAAAGAGCTGGAGGCCTCAAAGGTTAAGGAACTGAATCATTATCTGGAG
GCCGAGAAGTCTTGCAGGACTGATCTGGAGATGTATGTAGCTGTTTTGAACACCCAGAAATCTG
TTCTACAGGAAGATGCTGAGAAATTGAGGAAAGAACTGCATGAAGTTTGCCATCTCTTGGAGCA
AGAGCGACAACAACACAACCAGTTAAAACACACGTGGCAGAAGGCCAACGACCAGTTTTTGGAA
TCTCAGCGCTTGCTGATGAGAGACATGCAGCGAATGGAGATCGTGTTAACTTCAGAACAGCTAC
GACAAGTTGAAGAACTGAAGAAGAAAGATCAGGAGGAGGATGAACAACAAAGGATCAATAAGGG
AAAAGATAACAAGAAAATAGACACTGAAGAAGAAGTAAAAATACCAGTAGTATGTGCTTTAACT
CAAGAAGAATCTTCAACCCCACTATCAAATGAAGAGGAGCATTTAGACAGCACCCATGGGTCAG
TCCATTCCTTAGATGCAGACTTGCTGTTACCATCTGGAGATCCATTCAGTAAATCGGACAATGA
CATGTTTAAAGAGGGACTCCGGAGAGCTCAGTCTACAGACAGCTTGGGAACCTCAAGCTCATTG
CAATCCAAAGCTTTAGGCTATAACTACAAAGCAAAATCTGCTGGAAATTTGGATGAGTCGGATT
TTGGACCACTGGTTGGAGCAGATTCTGTGTCTGAGAACTTTGATACTGTGTCCCTTGGGTCACT
GCAGATGCCAAGTGGATTTATGTTAACCAAAGATCAAGAAAGAGCAATTAAGGCAATGACACCT
GAACAGGAGGAGACAGCATCCCTCCTCTCAAGTGTCACACAGGGTATGGAGAGTGCATATGTCT
CTCCTAGTGGTTACCTCTTAGTGAGTGAAACGGAATGGAATCTCCTGCAGAAAGAGATATCTGC
ACTTGTTTTAAGAGCCCAAGCCTCTGAGGTATTACTTGAAGAGTTACAACAGAGTTTTTCCCAA
GCAAAGAGGGATGTTCAGGAGCAGATGGCAGTGCTGATGCAGTCACGTGAACAGGTCTCAGAAG
AGCTGGTGAGGTTACAGAAAGACAATGACAGCCTCCAGGGAAAGCATAGCTTGCATGTGTCATT
ACAACTAGCAGAAGACTTCATTCTTCCAGATACTGTGCAGGTGCTCCGGGAACTGGTTTTAAAA
TATCGTGAGAACATTGTTCATGTGCGGACAGCAGCAGACCACATGGAAGAGAAGCTGAAGGCTG
AAATACTTTTTCTAAAAGAGCAAATTCAGGCGGAACAGTGTTTAAAAGAAAACCTTGAAGAGAC
ATTACAGCTGGAAATTGAAAACTGCAAGGAGGAAATAGCTTCCATTTCTAGTCTAAAAGCTGAA
TTAGAAAGAATAAAAGTTGAAAAGGGACAGTTGGAATCTACATTAAGAGAGAAGTCGCAACAAC
TTGAGAGCCTCCAAGAAATAAAAGTTAATTTAGAGGAACAGTTAAAGAAGGAAACTGCTGCTAA
GGCCACTGTTGAACAGCTCATGTTTGAAGAGAAGAACAAAGCTCAGAGGTTGCAGACAGAATTA
GATGTCAGTGAACAAGTCCAGAGAGATTTTGTAAAACTTTCTCAGACTCTTCAGGTGCAGTTAG
AGAGGATCCGGCAAGCAGACTCCCTGGAGAGGATCCGGGCAATTCTGAATGATACCAAACTGAC
AGACATTAACCAGCTCCCTGAGACATGACACCCTGATGGCAGGATTCTGACCTGCATTTTGGGT
TTTTAACTCATCTTTAGAATAACATTAATTATTATTTAACTCTTAATGGAAGAAGTCACAGCAA
AAGGAGGACTGGAGAAATGCAGTTCTGGAGGGAGAAGGCTGCTGTGTGCAGGGACAGCCAACAG
ACGTTTCAAAGGGAACACTAATGAGACACTGGACTCGATTCCAACAGGCGTGGGATCAGATTGG
GTGCCAGAAAAGTGCTGTTTCCTTGCCTGCTTCCTCCAGCGTGGACTCTGGAACATAATTCCTG
CCATGAAAGCAACTTCCCAATAGTGTTTGGAATTACGTTTTCTGTTCATACAAACTGGGAGAGA
AAAGTTTCTTTCTCCTGTGGTCTGGGGCTCATCAGTAGCAGTGTTCAGCTAGCAGAGAGGTGTA
GTGCGCTGTGTGAGTATTTTATATTAAAATGTGGAGTGAGAGCAGGCCATTGGCTATTGATTGT
GTTTCCCTTGCTCAATGCATTTTGTTTCCTTTTTAACCATTCCTTCTATTGGAAGACCTTAAAT
GCTATTGTAACTTGCTTGAGAACTATAGGACCATGGCAAACAAAAGCAATTAAAATTAGGAGAA
TCTGAATCTTTGGCTGAGGCCAATATATATTATATATATATATCAATTTATGGAAAAAAAGCAC
AAATAACCTTGGAAGCACTTTGTCTGCACACCATGATGAACTTCCTGGGCCCAAAGGTACCAGG
GCAAATAACTGGCACCATCTACCCTTTCGAAGTGTTTTAGTTACTGGATCAGTGGAAAATAATA
CTAATAAAACAAGCTATCTCTGACATCTAGT

hide sequence

RefSeq Acc Id:

XM_008767861 ⟹ XP_008766083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	56,089,134 - 56,168,778 (+)	NCBI
mRatBN7.2	10	55,591,269 - 55,667,595 (+)	NCBI
Rnor_6.0	10	57,504,442 - 57,579,901 (+)	NCBI

Sequence:

show sequence

CACTGAGCTAAATCCCCAGCCCCAAAAGCTATTTATTTAATTGTTGGGATGTAACAGTAACTAC
CAGCAGAAATAAGGCACTCAGAGACTAAATTAAATCCCCTTCATGATTTTAAATGGTAAACCTC
CTTCCAATGGTTATCCTTCATATATTCTTCTACATAGCTGCATTCTGATATATTTTCCCCCCTC
CACTGTTTAAAAATAAATCAAGGTTTCAATGGTTAGGTGTCATTATCTGACTATAGAGCTACCT
CAGAATAACTCTTTCCTGTTAATGACATGGAGCTCATAGCAGCAGTCTTTCTTCCAGCTGTGAG
TTGTACTAATGCTGTCAACTCTAGTGGAGCTAGCCTAGGGGTATGAGAATTAACAAATACAAGG
CTTGATTTGTATAGGTTAGAGAAATATATCCTTATTGCAGAGAACTTTGAAAAGAAAATTAATG
AGCCATAGTTCTAACTATTGGTATACTTCTAGCCTTTTAAACGTATTTTATAAAATCAGCTGTG
AATTGAGCAGTGGCTTAAGGGTAGAGTGTGTCCTTCAAAGATAATCCTGGTTATAATGCAGGCA
GATCACCATCGTTTCCAGTGGTTTATAGTAGCGAAAAAGGACTCCAGGTAGCTGAGGTAACTAA
ACAGTGGTTGGCTAGTGCTGATAGATATCTCCTGAAGGGATTATGTTGATAACCTTAAGGCTGA
GTCAAGGGTTTGTGTTTTGACCAAAACAGCCCCTGGCCTGGACCAGAATAGACAAACAGTGAGC
TCCAGATCTTGAGCCCCTAAGTAAGGAATGTGTCCACTCATTGTCAGACTATGGTCAGTCCTTA
TCTGAAAACAGATGACCTGCCAGTATTGGAGCTGTGACATAGAACCACAGTTTCTCTTCAGCAA
CGGGTAGCAGAATTGGAAAAAATTAATGCAGAATTTTTACGTGCACAGCAGCAGCTTGAGCAAG
AATTTAATCAAAAGAGAGCAAAATTTAAGGAGCTGTATTTGGCTAAAGAGGAGGATCTGAAGCG
GCAAAATGCAGTATTGCAAGCTGCGCAGGATGACTTGGGTCACCTTCGGACACAGCTGTGGGAG
GCGCAGGCAGAAATGGAGAATATCAAGGCGATCGCCACAGTCTCTGAGAACACTAAGCAAGAAG
CTATAGATGAAGTTAAAAGGCAGTGGAGAGAAGAAGTTGCTTCACTTCAGGCTGTAATGAAAGA
GACTGTGCGTGACTATGAGCATCAGTTTCACCTGAGGCTGGAGCAGGAACGAGCGCAGTGGGCA
CAGTATCGAGAGTCTGCAGACCGGGAGATAGCTGACCTAAGAAGAAGGTTGTCTGAAGGTCAAG
AGGAAGAAAATTTAGAAAATGAAATGAAAAAGGCCCAAGAGGATGCCGAGAAGCTTCGCTCTGT
CGTGATGCCCATGGAGAAGGAAATTGCAGCCCTGAAAGATAAACTGACAGAAGCTGAAGACAAG
ATTAAAGAGCTGGAGGCCTCAAAGGTTAAGGAACTGAATCATTATCTGGAGGCCGAGAAGTCTT
GCAGGACTGATCTGGAGATGTATGTAGCTGTTTTGAACACCCAGAAATCTGTTCTACAGGAAGA
TGCTGAGAAATTGAGGAAAGAACTGCATGAAGTTTGCCATCTCTTGGAGCAAGAGCGACAACAA
CACAACCAGTTAAAACACACGTGGCAGAAGGCCAACGACCAGTTTTTGGAATCTCAGCGCTTGC
TGATGAGAGACATGCAGCGAATGGAGATCGTGTTAACTTCAGAACAGCTACGACAAGTTGAAGA
ACTGAAGAAGAAAGATCAGGAGGAGGATGAACAACAAAGGATCAATAAGGGAAAAGATAACAAG
AAAATAGACACTGAAGAAGAAGTAAAAATACCAGTAGTATGTGCTTTAACTCAAGAAGAATCTT
CAACCCCACTATCAAATGAAGAGGAGCATTTAGACAGCACCCATGGGTCAGTCCATTCCTTAGA
TGCAGACTTGCTGTTACCATCTGGAGATCCATTCAGTAAATCGGACAATGACATGTTTAAAGAG
GGACTCCGGAGAGCTCAGTCTACAGACAGCTTGGGAACCTCAAGCTCATTGCAATCCAAAGCTT
TAGGCTATAACTACAAAGCAAAATCTGCTGGAAATTTGGATGAGTCGGATTTTGGACCACTGGT
TGGAGCAGATTCTGTGTCTGAGAACTTTGATACTGTGTCCCTTGGGTCACTGCAGATGCCAAGT
GGATTTATGTTAACCAAAGATCAAGAAAGAGCAATTAAGGCAATGACACCTGAACAGGAGGAGA
CAGCATCCCTCCTCTCAAGTGTCACACAGGGTATGGAGAGTGCATATGTCTCTCCTAGTGGTTA
CCTCTTAGTGAGTGAAACGGAATGGAATCTCCTGCAGAAAGAGGTACATAATGCTGGAAATAAG
CTTGGTAGACGTTGTGATATGTGTTCCAATTATGAAAAACAGTTACAAGGAATTCAGATTCAGG
AAGCTGAGACAAGAGACCAGGTGAAAAAACTGCAGTTAATGCTCAGGCAAGCTAATGACCAGCT
AGAGAAGACAATGAAAGAGAAACAGGAGCTAGAGGACTTCCTCAGGCAGAGTGCCGAGGACTCA
AGCCACCAGATATCTGCACTTGTTTTAAGAGCCCAAGCCTCTGAGGTATTACTTGAAGAGTTAC
AACAGAGTTTTTCCCAAGCAAAGAGGGATGTTCAGGAGCAGATGGCAGTGCTGATGCAGTCACG
TGAACAGGTCTCAGAAGAGCTGGTGAGGTTACAGAAAGACAATGACAGCCTCCAGGGAAAGCAT
AGCTTGCATGTGTCATTACAACTAGCAGAAGACTTCATTCTTCCAGATACTGTGCAGGTGCTCC
GGGAACTGGTTTTAAAATATCGTGAGAACATTGTTCATGTGCGGACAGCAGCAGACCACATGGA
AGAGAAGCTGAAGGCTGAAATACTTTTTCTAAAAGAGCAAATTCAGGCGGAACAGTGTTTAAAA
GAAAACCTTGAAGAGACATTACAGCTGGAAATTGAAAACTGCAAGGAGGAAATAGCTTCCATTT
CTAGTCTAAAAGCTGAATTAGAAAGAATAAAAGTTGAAAAGGGACAGTTGGAATCTACATTAAG
AGAGAAGTCGCAACAACTTGAGAGCCTCCAAGAAATAAAAGTTAATTTAGAGGAACAGTTAAAG
AAGGAAACTGCTGCTAAGGCCACTGTTGAACAGCTCATGTTTGAAGAGAAGAACAAAGCTCAGA
GGTTGCAGACAGAATTAGATGTCAGTGAACAAGTCCAGAGAGATTTTGTAAAACTTTCTCAGAC
TCTTCAGGTGCAGTTAGAGAGGATCCGGCAAGCAGACTCCCTGGAGAGGATCCGGGCAATTCTG
AATGATACCAAACTGACAGACATTAACCAGCTCCCTGAGACATGACACCCTGATGGCAGGATTC
TGACCTGCATTTTGGGTTTTTAACTCATCTTTAGAATAACATTAATTATTATTTAACTCTTAAT
GGAAGAAGTCACAGCAAAAGGAGGACTGGAGAAATGCAGTTCTGGAGGGAGAAGGCTGCTGTGT
GCAGGGACAGCCAACAGACGTTTCAAAGGGAACACTAATGAGACACTGGACTCGATTCCAACAG
GCGTGGGATCAGATTGGGTGCCAGAAAAGTGCTGTTTCCTTGCCTGCTTCCTCCAGCGTGGACT
CTGGAACATAATTCCTGCCATGAAAGCAACTTCCCAATAGTGTTTGGAATTACGTTTTCTGTTC
ATACAAACTGGGAGAGAAAAGTTTCTTTCTCCTGTGGTCTGGGGCTCATCAGTAGCAGTGTTCA
GCTAGCAGAGAGGTGTAGTGCGCTGTGTGAGTATTTTATATTAAAATGTGGAGTGAGAGCAGGC
CATTGGCTATTGATTGTGTTTCCCTTGCTCAATGCATTTTGTTTCCTTTTTAACCATTCCTTCT
ATTGGAAGACCTTAAATGCTATTGTAACTTGCTTGAGAACTATAGGACCATGGCAAACAAAAGC
AATTAAAATTAGGAGAATCTGAATCTTTGGCTGAGGCCAATATATATTATATATATATATCAAT
TTATGGAAAAAAAGCACAAATAACCTTGGAAGCACTTTGTCTGCACACCATGATGAACTTCCTG
GGCCCAAAGGTACCAGGGCAAATAACTGGCACCATCTACCCTTTCGAAGTGTTTTAGTTACTGG
ATCAGTGGAAAATAATACTAATAAAACAAGCTATCTCTGACATCTAGT

hide sequence

RefSeq Acc Id:

XM_063269681 ⟹ XP_063125751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	56,064,742 - 56,168,778 (+)	NCBI

RefSeq Acc Id:

XM_063269682 ⟹ XP_063125752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	56,064,742 - 56,168,778 (+)	NCBI

RefSeq Acc Id:

XR_594720

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	56,064,742 - 56,163,275 (+)	NCBI
mRatBN7.2	10	55,566,156 - 55,664,690 (+)	NCBI
Rnor_6.0	10	57,462,272 - 57,578,586 (+)	NCBI

Sequence:

show sequence

CGCACTGCTTATTTCCCGCTGTCAGGATGAGGAGGCGGAGGTCGGCGCTCCGGTCCGTCTCTGC
CCGAGGCTGTGGCGGCGCCAGCGGCTCCAGCCTTAGCGGTTCCTCCCTGGGCGGCGGCGGCCGC
GGCTCGGTCGACGCGTTCTCCGCCAGCTGAGTCCGCCGCAGCCCGGGACGCTGCTTCCCCGCCC
ATCCCCGTTCTCCAGGCCGCCCACTGGCCATGGCGCAGCCGGGCCCGGCTCCCCAGCCTGACGT
TTCTCTTCAGCAACGGGTAGCAGAATTGGAAAAAATTAATGCAGAATTTTTACGTGCACAGCAG
CAGCTTGAGCAAGAATTTAATCAAAAGAGAGCAAAATTTAAGGAGCTGTATTTGGCTAAAGAGG
AGGATCTGAAGCGGCAAAATGCAGTATTGCAAGCTGCGCAGGATGACTTGGGTCACCTTCGGAC
ACAGCTGTGGGAGGCGCAGGCAGAAATGGAGAATATCAAGGCGATCGCCACAGTCTCTGAGAAC
ACTAAGCAAGAAGCTATAGATGAAGTTAAAAGGCAGTGGAGAGAAGAAGTTGCTTCACTTCAGG
CTGTAATGAAAGAGACTGTGCGTGACTATGAGCATCAGTTTCACCTGAGGCTGGAGCAGGAACG
AGCGCAGTGGGCACAGTATCGAGAGTCTGCAGACCGGGAGATAGCTGACCTAAGAAGAAGGTTG
TCTGAAGGTCAAGAGGAAGAAAATTTAGAAAATGAAATGAAAAAGGCCCAAGAGGATGCCGAGA
AGCTTCGCTCTGTCGTGATGCCCATGGAGAAGGAAATTGCAGCCCTGAAAGATAAACTGACAGA
AGCTGAAGACAAGATTAAAGAGCTGGAGGCCTCAAAGGTTAAGGAACTGAATCATTATCTGGAG
GCCGAGAAGTCTTGCAGGACTGATCTGGAGATGTATGTAGCTGTTTTGAACACCCAGAAATCTG
TTCTACAGGAAGATGCTGAGAAATTGAGGAAAGAACTGCATGAAGTTTGCCATCTCTTGGAGCA
AGAGCGACAACAACACAACCAGTTAAAACACACGTGGCAGAAGGCCAACGACCAGTTTTTGGAA
TCTCAGCGCTTGCTGATGAGAGACATGCAGCGAATGGAGATCGTGTTAACTTCAGAACAGCTAC
GACAAGTTGAAGAACTGAAGAAGAAAGATCAGGAGGAGGATGAACAACAAAGGATCAATAAGGG
AAAAGATAACAAGAAAATAGACACTGAAGAAGAAGTAAAAATACCAGTAGTATGTGCTTTAACT
CAAGAAGAATCTTCAACCCCACTATCAAATGAAGAGGAGCATTTAGACAGCACCCATGGGTCAG
TCCATTCCTTAGATGCAGACTTGCTGTTACCATCTGGAGATCCATTCAGTAAATCGGACAATGA
CATGTTTAAAGAGGGACTCCGGAGAGCTCAGTCTACAGACAGCTTGGGAACCTCAAGCTCATTG
CAATCCAAAGCTTTAGGCTATAACTACAAAGCAAAATCTGCTGGAAATTTGGATGAGTCGGATT
TTGGACCACTGGTTGGAGCAGATTCTGTGTCTGAGAACTTTGATACTGTGTCCCTTGGGTCACT
GCAGATGCCAAGTGGATTTATGTTAACCAAAGATCAAGAAAGAGCAATTAAGGCAATGACACCT
GAACAGGAGGAGACAGCATCCCTCCTCTCAAGTGTCACACAGGGTATGGAGAGTGCATATGTCT
CTCCTAGTGGTTACCTCTTAGTGAGTGAAACGGAATGGAATCTCCTGCAGAAAGAGGTACATAA
TGCTGGAAATAAGCTTGGTAGACGTTGTGATATGTGTTCCAATTATGAAAAACAGTTACAAGGA
ATTCAGATTCAGGAAGCTGAGACAAGAGACCAGGTGAAAAAACTGCAGTTAATGCTCAGGCAAG
CTAATGACCAGCTAGAGAAGACAATGAAAGAGAAACAGGAGCTAGAGGACTTCCTCAGGCAGAG
TGCCGAGGACTCAAGCCACCAGATATCTGCACTTGTTTTAAGAGCCCAAGCCTCTGAGGTATTA
CTTGAAGAGTTACAACAGAGTTTTTCCCAAGCAAAGAGGGATGTTCAGGAGCAGATGGCAGTGC
TGATGCAGTCACGTGAACAGGTCTCAGAAGAGCTGGTGAGGTTACAGAAAGACAATGACAGCCT
CCAGGGAAAGCATAGCTTGCATGTGTCATTACAACTAGCAGAAGACTTCATTCTTCCAGATACT
GTGCAGGTGCTCCGGGAACTGGTTTTAAAATATCGTGAGAACATTGTTCATGTGCGGACAGCAG
CAGACCACATGGAAGAGAAGCTGAAGGCTGAAATACTTTTTCTAAAAGAGCAAATTCAGGCGGA
ACAGTGTTTAAAAGAAAACCTTGAAGAGACATTACAGCTGGAAATTGAAAACTGCAAGGAGGAA
ATAGTTGGAATCTACATTAAGAGAGAAGTCGCAACAACTTGAGAGCCTCCAAGAAATAAAAGTT
AATTTAGAGGAACAGTTAAAGAAGGAAACTGCTGCTAAGGCCACTGTTGAACAGCTCATGTTTG
AAGAGAAGAACAAAGCTCAGAGGTTGCAGACAGAATTAGATGTCAGTGAACAAGTCCAGAGAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_061997	(Get FASTA)	NCBI Sequence Viewer
	XP_006246857	(Get FASTA)	NCBI Sequence Viewer
	XP_006246858	(Get FASTA)	NCBI Sequence Viewer
	XP_008766083	(Get FASTA)	NCBI Sequence Viewer
	XP_063125751	(Get FASTA)	NCBI Sequence Viewer
	XP_063125752	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB47746	(Get FASTA)	NCBI Sequence Viewer
	BAA21782	(Get FASTA)	NCBI Sequence Viewer
	EDM05057	(Get FASTA)	NCBI Sequence Viewer
	EDM05058	(Get FASTA)	NCBI Sequence Viewer
	EDM05059	(Get FASTA)	NCBI Sequence Viewer
	EDM05060	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000090309
	ENSRNOP00000093398
	ENSRNOP00000100373
	ENSRNOP00000104261
GenBank Protein	O35550	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_061997 ⟸ NM_019124

- UniProtKB:

P70609 (UniProtKB/Swiss-Prot), O35550 (UniProtKB/Swiss-Prot), A6HGA2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQPGPAPQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVL
QAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVMKETVRDY
EHQFHLRLEQERAQWAQYRESADREIADLRRRLSEGQEEENLENEMKKAQEDAEKLRSVVMPME
KEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLR
KELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKD
QEEDEQQRINKGKDNKKIDTEEEVKIPVVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLLL
PSGDPFSKSDNDMFKEGLRRAQSTDSLGTSSSLQSKALGYNYKAKSAGNLDESDFGPLVGADSV
SENFDTVSLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYRLVSE
TEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMK
EKQELEDFLRQSAEDSSHQISALVLRAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSREQVSE
ELVRLQKDNDSLQGKHSLHVSLQLAEDFILPDTVQVLRELVLKYRENIVHVRTAADHMEEKLKA
EILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQ
LESLQEIKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQL
ERIRQADSLERIRAILNDTKLTDINQLPET

hide sequence

RefSeq Acc Id:	XP_006246857 ⟸ XM_006246795
- Peptide Label:	isoform X2
- UniProtKB:	P70609 (UniProtKB/Swiss-Prot), O35550 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAQPGPAPQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVL QAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVMKETVRDY EHQFHLRLEQERAQWAQYRESADREIADLRRRLSEGQEEENLENEMKKAQEDAEKLRSVVMPME KEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLR KELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKD QEEDEQQRINKGKDNKKIDTEEEVKIPVVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLLL PSGDPFSKSDNDMFKEGLRRAQSTDSLGTSSSLQSKALGYNYKAKSAGNLDESDFGPLVGADSV SENFDTVSLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYLLVSE TEWNLLQKEVKKLQLMLRQANDQLEKTMKEKQELEDFLRQSAEDSSHQISALVLRAQASEVLLE ELQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQLAEDFILPDTVQ VLRELVLKYRENIVHVRTAADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIA SISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKVNLEEQLKKETAAKATVEQLMFEEKNK AQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQLPET hide sequence

RefSeq Acc Id:	XP_006246858 ⟸ XM_006246796
- Peptide Label:	isoform X4
- UniProtKB:	P70609 (UniProtKB/Swiss-Prot), O35550 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAQPGPAPQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVL QAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVMKETVRDY EHQFHLRLEQERAQWAQYRESADREIADLRRRLSEGQEEENLENEMKKAQEDAEKLRSVVMPME KEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLR KELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKD QEEDEQQRINKGKDNKKIDTEEEVKIPVVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLLL PSGDPFSKSDNDMFKEGLRRAQSTDSLGTSSSLQSKALGYNYKAKSAGNLDESDFGPLVGADSV SENFDTVSLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYLLVSE TEWNLLQKEISALVLRAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQKDND SLQGKHSLHVSLQLAEDFILPDTVQVLRELVLKYRENIVHVRTAADHMEEKLKAEILFLKEQIQ AEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKVN LEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLE RIRAILNDTKLTDINQLPET hide sequence

RefSeq Acc Id:	XP_008766083 ⟸ XM_008767861
- Peptide Label:	isoform X5
- UniProtKB:	A6HGA5 (UniProtKB/TrEMBL), A0A8I5ZKK4 (UniProtKB/TrEMBL), A6HGA4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVMKETVRDYEHQFHLRLEQERAQWAQYRE SADREIADLRRRLSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKEL EASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQL KHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRINKGKDNKKIDT EEEVKIPVVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLLLPSGDPFSKSDNDMFKEGLRR AQSTDSLGTSSSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSENFDTVSLGSLQMPSGFML TKDQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYLLVSETEWNLLQKEVHNAGNKLGRR CDMCSNYEKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKEKQELEDFLRQSAEDSSHQI SALVLRAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHV SLQLAEDFILPDTVQVLRELVLKYRENIVHVRTAADHMEEKLKAEILFLKEQIQAEQCLKENLE ETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKVNLEEQLKKETA AKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTK LTDINQLPET hide sequence

Ensembl Acc Id:

ENSRNOP00000050017 ⟸ ENSRNOT00000041443

Ensembl Acc Id:

ENSRNOP00000085606 ⟸ ENSRNOT00000105504

Ensembl Acc Id:

ENSRNOP00000078275 ⟸ ENSRNOT00000097255

Ensembl Acc Id:

ENSRNOP00000090309 ⟸ ENSRNOT00000109255

Ensembl Acc Id:

ENSRNOP00000093398 ⟸ ENSRNOT00000107871

RefSeq Acc Id:	XP_063125751 ⟸ XM_063269681
- Peptide Label:	isoform X1
- UniProtKB:	P70609 (UniProtKB/Swiss-Prot), O35550 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063125752 ⟸ XM_063269682
- Peptide Label:	isoform X3
- UniProtKB:	P70609 (UniProtKB/Swiss-Prot), O35550 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000100373 ⟸ ENSRNOT00000137271

Ensembl Acc Id:

ENSRNOP00000104261 ⟸ ENSRNOT00000128672

Protein Domains

Rabaptin coiled-coil Rabaptin GTPase-Rab5 binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35550-F1-model_v2	AlphaFold	O35550	1-862	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708568	AgrOrtholog
BioCyc Gene	G2FUF-24422	BioCyc
Ensembl Genes	ENSRNOG00000005015	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000107871	ENTREZGENE
	ENSRNOT00000109255	ENTREZGENE
	ENSRNOT00000128672	ENTREZGENE
	ENSRNOT00000137271	ENTREZGENE
Gene3D-CATH	1.20.5.340	UniProtKB/Swiss-Prot
	Single helix bin	UniProtKB/Swiss-Prot
InterPro	Rabaptin	UniProtKB/Swiss-Prot
	Rabaptin_coiled-coil	UniProtKB/Swiss-Prot
	Rabaptin_Rab5-bd_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:54190	UniProtKB/Swiss-Prot
NCBI Gene	54190	ENTREZGENE
PANTHER	PTHR31179	UniProtKB/Swiss-Prot
	PTHR31179:SF5	UniProtKB/Swiss-Prot
Pfam	Rab5-bind	UniProtKB/Swiss-Prot
	Rabaptin	UniProtKB/Swiss-Prot
PhenoGen	Rabep1	PhenoGen
PRINTS	RABAPTIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000005015	RatGTEx
Superfamily-SCOP	G protein-binding domain	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZKK4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AE47_RAT	UniProtKB/TrEMBL
	A0A8I6AFR7_RAT	UniProtKB/TrEMBL
	A0A8I6GD33_RAT	UniProtKB/TrEMBL
	A0ABK0LFP3_RAT	UniProtKB/TrEMBL
	A0ABK0LFW1_RAT	UniProtKB/TrEMBL
	A6HGA2	ENTREZGENE, UniProtKB/TrEMBL
	A6HGA3_RAT	UniProtKB/TrEMBL
	A6HGA4	ENTREZGENE, UniProtKB/TrEMBL
	A6HGA5	ENTREZGENE, UniProtKB/TrEMBL
	G3V9J7_RAT	UniProtKB/TrEMBL
	O35550	ENTREZGENE
	P70609	ENTREZGENE
	RABE1_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	P70609	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Rabep1	rabaptin, RAB GTPase binding effector protein 1		rabaptin 5	Name updated	1299863	APPROVED
2004-09-10	Rabep1	rabaptin 5	LOC54190		Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)