Wipf3 (WAS/WASL interacting protein family, member 3) - Rat Genome Database

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Gene: Wipf3 (WAS/WASL interacting protein family, member 3) Rattus norvegicus
Analyze
Symbol: Wipf3
Name: WAS/WASL interacting protein family, member 3
RGD ID: 708559
Description: Enables SH3 domain binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation; endosomal transport; and exocytosis. Predicted to be located in cytosol. Predicted to be part of WASH complex. Predicted to be active in early endosome; recycling endosome; and synapse. Orthologous to human WIPF3 (WAS/WASL interacting protein family member 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: corticosteroids and regional expression protein 16; Cr16; SH3 domain binding protein CR16; WAS/WASL-interacting protein family member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8484,880,403 - 84,960,250 (+)NCBIGRCr8
mRatBN7.2483,550,075 - 83,629,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl483,550,468 - 83,629,386 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx488,771,521 - 88,844,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0484,546,946 - 84,619,915 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0482,966,400 - 83,039,721 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0484,596,305 - 84,676,775 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl484,597,323 - 84,676,775 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04149,256,226 - 149,336,532 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4482,823,009 - 82,907,420 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1483,107,630 - 83,192,042 (+)NCBI
Celera478,419,412 - 78,498,878 (+)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
early endosome  (IBA,IEA)
recycling endosome  (IBA)
synapse  (ISO)
WASH complex  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. CR16, a novel proline-rich protein expressed in rat brain neurons, binds to SH3 domains and is a MAP kinase substrate. Weiler MC, etal., J Mol Neurosci 1996 Fall;7(3):203-15.

Genomics

Comparative Map Data
Wipf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8484,880,403 - 84,960,250 (+)NCBIGRCr8
mRatBN7.2483,550,075 - 83,629,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl483,550,468 - 83,629,386 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx488,771,521 - 88,844,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0484,546,946 - 84,619,915 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0482,966,400 - 83,039,721 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0484,596,305 - 84,676,775 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl484,597,323 - 84,676,775 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04149,256,226 - 149,336,532 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4482,823,009 - 82,907,420 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1483,107,630 - 83,192,042 (+)NCBI
Celera478,419,412 - 78,498,878 (+)NCBICelera
Cytogenetic Map4q24NCBI
WIPF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38729,806,508 - 29,917,061 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl729,806,486 - 29,917,061 (+)EnsemblGRCh38hg38GRCh38
GRCh37729,846,124 - 29,956,677 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36729,840,866 - 29,912,316 (+)NCBINCBI36Build 36hg18NCBI36
Celera729,904,882 - 29,935,185 (+)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef729,727,686 - 29,838,366 (+)NCBIHuRef
CHM1_1729,846,374 - 29,956,782 (+)NCBICHM1_1
T2T-CHM13v2.0729,944,291 - 30,054,757 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2729,896,075 - 30,006,505 (+)NCBI
Wipf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39654,406,206 - 54,480,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl654,406,588 - 54,480,753 (+)EnsemblGRCm39 Ensembl
GRCm38654,429,218 - 54,503,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl654,429,603 - 54,503,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv37654,402,877 - 54,453,762 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36654,411,061 - 54,418,818 (+)NCBIMGSCv36mm8
Celera654,981,884 - 55,032,697 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map626.93NCBI
Wipf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541031,166,953 - 31,226,415 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541031,166,874 - 31,227,377 (+)NCBIChiLan1.0ChiLan1.0
WIPF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2634,623,578 - 34,735,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1782,948,306 - 83,060,382 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0730,436,514 - 30,547,147 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1730,583,574 - 30,661,986 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl730,582,399 - 30,661,986 (+)Ensemblpanpan1.1panPan2
WIPF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11442,634,342 - 42,717,974 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1442,692,136 - 42,715,726 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1442,067,530 - 42,151,129 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01442,578,935 - 42,659,697 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1442,595,211 - 42,658,612 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11442,692,895 - 42,776,491 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01442,370,765 - 42,454,282 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01442,732,112 - 42,812,849 (+)NCBIUU_Cfam_GSD_1.0
Wipf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511886,974,695 - 86,997,226 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364786,186,483 - 6,206,957 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364786,186,405 - 6,208,588 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIPF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1842,991,498 - 43,071,266 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11842,991,495 - 43,025,177 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21847,383,131 - 47,436,485 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WIPF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12128,459,605 - 28,570,438 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2128,471,971 - 28,501,063 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604276,157,604 - 76,225,083 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wipf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624739872,213 - 944,184 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624739843,193 - 971,646 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wipf3
593 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:969
Count of miRNA genes:283
Interacting mature miRNAs:361
Transcripts:ENSRNOT00000012747, ENSRNOT00000012755, ENSRNOT00000074054
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
2306794Ean2Experimental allergic neuritis QTL 26.4nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)48342841995853334Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat

Markers in Region
D4Wox35  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2483,629,334 - 83,629,626 (+)MAPPERmRatBN7.2
Rnor_6.0484,676,188 - 84,676,479NCBIRnor6.0
Rnor_5.04149,335,945 - 149,336,236UniSTSRnor5.0
RGSC_v3.4482,906,833 - 82,907,124UniSTSRGSC3.4
Celera478,498,291 - 78,498,582UniSTS
Cytogenetic Map4q24UniSTS
RH133698  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2483,627,193 - 83,627,413 (+)MAPPERmRatBN7.2
Rnor_6.0484,674,047 - 84,674,266NCBIRnor6.0
Rnor_5.04149,333,804 - 149,334,023UniSTSRnor5.0
RGSC_v3.4482,904,692 - 82,904,911UniSTSRGSC3.4
Celera478,496,150 - 78,496,369UniSTS
RH 3.4 Map4525.0UniSTS
Cytogenetic Map4q24UniSTS
RH144430  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2483,624,221 - 83,624,353 (+)MAPPERmRatBN7.2
Rnor_6.0484,671,075 - 84,671,206NCBIRnor6.0
Rnor_5.04149,330,832 - 149,330,963UniSTSRnor5.0
RGSC_v3.4482,901,720 - 82,901,851UniSTSRGSC3.4
Celera478,493,178 - 78,493,309UniSTS
RH 3.4 Map4524.4UniSTS
Cytogenetic Map4q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 35 3 19 20
Low 3 8 37 21 19 21 8 8 55 35 21 11 8
Below cutoff 20 20 20

Sequence


RefSeq Acc Id: ENSRNOT00000012755   ⟹   ENSRNOP00000012755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl483,550,468 - 83,629,386 (+)Ensembl
Rnor_6.0 Ensembl484,597,323 - 84,676,775 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074054   ⟹   ENSRNOP00000064597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl483,550,468 - 83,628,058 (+)Ensembl
Rnor_6.0 Ensembl484,597,323 - 84,674,161 (+)Ensembl
RefSeq Acc Id: NM_001398730   ⟹   NP_001385659
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8484,880,795 - 84,960,250 (+)NCBI
mRatBN7.2483,550,468 - 83,629,925 (+)NCBI
RefSeq Acc Id: NM_147211   ⟹   NP_671744
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8484,880,795 - 84,960,250 (+)NCBI
mRatBN7.2483,550,468 - 83,629,925 (+)NCBI
Rnor_6.0484,597,323 - 84,676,775 (+)NCBI
Rnor_5.04149,256,226 - 149,336,532 (+)NCBI
RGSC_v3.4482,823,009 - 82,907,420 (+)RGD
Celera478,419,412 - 78,498,878 (+)RGD
Sequence:
RefSeq Acc Id: XM_039107139   ⟹   XP_038963067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8484,880,403 - 84,960,250 (+)NCBI
mRatBN7.2483,550,076 - 83,629,929 (+)NCBI
RefSeq Acc Id: NP_671744   ⟸   NM_147211
- Peptide Label: isoform 2
- UniProtKB: A0A8L2UNK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012755   ⟸   ENSRNOT00000012755
RefSeq Acc Id: ENSRNOP00000064597   ⟸   ENSRNOT00000074054
RefSeq Acc Id: XP_038963067   ⟸   XM_039107139
- Peptide Label: isoform X1
- UniProtKB: A0A8L2UNK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385659   ⟸   NM_001398730
- Peptide Label: isoform 1
- UniProtKB: Q9Z0G8 (UniProtKB/Swiss-Prot),   Q62775 (UniProtKB/Swiss-Prot),   A0A8L2UNK9 (UniProtKB/TrEMBL)
Protein Domains
WH2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z0G8-F1-model_v2 AlphaFold Q9Z0G8 1-485 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693063
Promoter ID:EPDNEW_R3588
Type:initiation region
Name:Wipf3_1
Description:WAS/WASL interacting protein family, member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0484,597,310 - 84,597,370EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708559 AgrOrtholog
BioCyc Gene G2FUF-44762 BioCyc
Ensembl Genes ENSRNOG00000009571 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055010789 UniProtKB/Swiss-Prot
  ENSRNOG00060029915 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000012755 ENTREZGENE
  ENSRNOT00000012755.7 UniProtKB/Swiss-Prot
  ENSRNOT00000074054 ENTREZGENE
  ENSRNOT00000074054.3 UniProtKB/TrEMBL
  ENSRNOT00055018239 UniProtKB/Swiss-Prot
  ENSRNOT00060052033 UniProtKB/Swiss-Prot
InterPro WASH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:259242 UniProtKB/Swiss-Prot
NCBI Gene 259242 ENTREZGENE
PANTHER CXYORF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WAS/WASL-INTERACTING PROTEIN FAMILY MEMBER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wipf3 PhenoGen
PRINTS PRICHEXTENSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009571 RatGTEx
  ENSRNOG00055010789 RatGTEx
  ENSRNOG00060029915 RatGTEx
SMART WH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2UNK9 ENTREZGENE, UniProtKB/TrEMBL
  Q62775 ENTREZGENE
  Q9Z0G8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q62775 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-03 Wipf3  WAS/WASL interacting protein family, member 3  Cr16  SH3 domain binding protein CR16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Cr16  SH3 domain binding protein CR16      Symbol and Name status set to approved 1299863 APPROVED