Slc1a5 (solute carrier family 1 member 5) - Rat Genome Database

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Gene: Slc1a5 (solute carrier family 1 member 5) Rattus norvegicus
Analyze
Symbol: Slc1a5
Name: solute carrier family 1 member 5
RGD ID: 708512
Description: Enables L-amino acid transmembrane transporter activity; antiporter activity; and ligand-gated channel activity. Involved in carboxylic acid transport. Predicted to be located in basal plasma membrane; centriolar satellite; and ciliary basal body. Predicted to be active in plasma membrane. Orthologous to human SLC1A5 (solute carrier family 1 member 5); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ASC-like Na(+)-dependent neutral amino acid transporter ASCT2; Asct2; ATB(0); CAZ-associated structural protein; H4-ASCT2; H4-system ASC-like transporter; insulin-activated amino acid transporter; neutral amino acid transporter B(0); Slc1a7; sodium-dependent neutral amino acid transporter ASCT2; sodium-dependent neutral amino acid transporter type 2; solute carrier family 1 (neutral amino acid transporter), member 5; solute carrier family 1, member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,584,949 - 86,599,052 (+)NCBIGRCr8
mRatBN7.2177,456,849 - 77,470,952 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,456,694 - 77,470,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,837,237 - 82,851,346 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,401,281 - 91,415,390 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,592,328 - 84,606,437 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,710,686 - 78,724,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,710,539 - 78,724,794 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,957,648 - 79,971,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,111,082 - 77,125,166 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,189,192 - 77,203,276 (+)NCBI
Celera171,941,916 - 71,956,019 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Slc1a5RatCOVID-19  ISOSLC1A5 (Homo sapiens)9068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
Slc1a5Ratesophagus squamous cell carcinoma  ISOSLC1A5 (Homo sapiens)151361149protein:increased expression:esophagusRGD 
Slc1a5Ratesophagus squamous cell carcinoma disease_progressionISOSLC1A5 (Homo sapiens)11532833 RGD 
Slc1a5Ratlung adenocarcinoma disease_progressionISOSLC1A5 (Homo sapiens)151361150 RGD 
Slc1a5Ratpulmonary hypertension  ISOSLC1A5 (Homo sapiens)151361111protein:increased expression:myocytes plasma membrane and right ventricleRGD 
Slc1a5RatRight Ventricular Hypertrophy  IEP 151361111mRNA:increased expression:right ventricleRGD 
Slc1a5Rattongue squamous cell carcinoma disease_progressionISOSLC1A5 (Homo sapiens)151361157 RGD 
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Original Reference(s)
Slc1a5Rathereditary spastic paraplegia  ISOSLC1A5 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegiaClinVar 
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Slc1a5Ratpancreatic cancer  ISOSLC1A5 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35929395

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Original Reference(s)
Slc1a5Rat(-)-alpha-phellandrene decreases expressionISOSLC1A5 (Homo sapiens)6480464alpha phellandrene results in decreased expression of SLC1A5 mRNACTDPMID:25075043
Slc1a5Rat(S)-colchicine decreases expressionISOSLC1A5 (Homo sapiens)6480464Colchicine results in decreased expression of SLC1A5 mRNACTDPMID:24211769
Slc1a5Rat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISOSLC1A5 (Homo sapiens)6480464o and p'-DDT results in increased expression of SLC1A5 mRNACTDPMID:19371625
Slc1a5Rat1,2-dichloroethane decreases expressionISOSlc1a5 (Mus musculus)6480464ethylene dichloride results in decreased expression of SLC1A5 mRNACTDPMID:28960355
Slc1a5Rat1,2-dimethylhydrazine multiple interactionsISOSlc1a5 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SLC1A5 mRNACTDPMID:22206623
Slc1a5Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of SLC1A5 mRNACTDPMID:20551477
Slc1a5Rat17alpha-ethynylestradiol affects expressionISOSLC1A5 (Homo sapiens)6480464Ethinyl Estradiol affects the expression of SLC1A5 mRNACTDPMID:20170705
Slc1a5Rat17alpha-ethynylestradiol increases expressionISOSLC1A5 (Homo sapiens)6480464Ethinyl Estradiol results in increased expression of SLC1A5 mRNACTDPMID:18936297
Slc1a5Rat17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of SLC1A5 mRNACTDPMID:20170705
Slc1a5Rat17beta-estradiol increases expressionISOSLC1A5 (Homo sapiens)6480464Estradiol results in increased expression of SLC1A5 mRNACTDPMID:23019147 more ...
Slc1a5Rat17beta-estradiol decreases expressionISOSLC1A5 (Homo sapiens)6480464Estradiol results in decreased expression of SLC1A5 proteinCTDPMID:33181973
Slc1a5Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of SLC1A5 mRNA and Estradiol results in increased expression of SLC1A5 proteinCTDPMID:32145629
Slc1a5Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOSlc1a5 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Slc1a5Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOSlc1a5 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Slc1a5Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSlc1a5 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of SLC1A5 mRNACTDPMID:21570461 and PMID:26377647
Slc1a5Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of SLC1A5 mRNACTDPMID:33387578 and PMID:34747641
Slc1a5Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSlc1a5 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of SLC1A5 mRNACTDPMID:26290441 and PMID:27562557
Slc1a5Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISOSLC1A5 (Homo sapiens)64804642 more ...CTDPMID:26705709
Slc1a5Rat2,6-dimethoxyphenol multiple interactionsISOSLC1A5 (Homo sapiens)6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in increased expression of and affects the localization of SLC1A5 proteinCTDPMID:38598786
Slc1a5Rat2-bromohexadecanoic acid multiple interactionsISOSLC1A5 (Homo sapiens)64804642-bromopalmitate inhibits the reaction [[Cadmium Chloride results in increased abundance of Cadmium] which results in increased palmitoylation of SLC1A5 protein]CTDPMID:38195004

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Biological Process
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Original Reference(s)
Slc1a5Ratacidic amino acid transport involved_inIEAGO:00151721600115GO_REF:0000108GOCGO_REF:0000108
Slc1a5Ratamino acid transport involved_inIEAUniProtKB-KW:KW-00291600115GO_REF:0000043UniProtGO_REF:0000043
Slc1a5Ratdicarboxylic acid transport involved_inIEAARBA:ARBA000270701600115GO_REF:0000117UniProtGO_REF:0000117
Slc1a5Raterythrocyte differentiation involved_inISOSLC1A5 (Homo sapiens)1624291 PMID:24953180RGDPMID:24953180
Slc1a5Raterythrocyte differentiation involved_inIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5Ratglutamine secretion  IDA 1299491 RGD 
Slc1a5Ratglutamine transport involved_inISOSLC1A5 (Homo sapiens)1624291 PMID:29872227RGDPMID:29872227
Slc1a5Ratglutamine transport involved_inIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5RatL-alpha-amino acid transmembrane transport involved_inIEAGO:00151791600115GO_REF:0000108GOCGO_REF:0000108
Slc1a5RatL-aspartate import across plasma membrane involved_inIDA 21201277PMID:14622120ARUK-UCL 
Slc1a5RatL-aspartate import across plasma membrane involved_inIBAMGI:105305 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc1a5RatL-aspartate import across plasma membrane involved_inISOSlc1a5 (Mus musculus)1624291 PMID:14622120RGDPMID:14622120
Slc1a5RatL-glutamine import across plasma membrane  IDA 1299491 RGD 
Slc1a5RatL-serine transport  IDA 1642943astrocytesRGD 
Slc1a5Ratneutral amino acid transport involved_inISOSLC1A5 (Homo sapiens)1624291 PMID:23756778RGDPMID:23756778
Slc1a5Ratneutral amino acid transport involved_inIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5Ratneutral amino acid transport involved_inIDA 158013776PMID:10698697UniProt 
Slc1a5Ratprotein homotrimerization involved_inISOSLC1A5 (Homo sapiens)1624291 PMID:29872227RGDPMID:29872227
Slc1a5Ratprotein homotrimerization involved_inIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5Rattransmembrane transport involved_inIEAGO:00152971600115GO_REF:0000108GOCGO_REF:0000108
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Cellular Component
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Original Reference(s)
Slc1a5Ratbasal plasma membrane located_inISOSlc1a5 (Mus musculus)1624291 PMID:14622120RGDPMID:14622120
Slc1a5Ratcentriolar satellite located_inIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5Ratcentriolar satellite located_inISOSLC1A5 (Homo sapiens) and UniProtKB:Q15758-11624291 RGDGO_REF:0000052
Slc1a5Ratciliary basal body located_inIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5Ratciliary basal body located_inISOSLC1A5 (Homo sapiens) and UniProtKB:Q15758-11624291 RGDGO_REF:0000052
Slc1a5Ratmelanosome located_inIEAUniProtKB-SubCell:SL-01611600115GO_REF:0000044UniProtGO_REF:0000044
Slc1a5Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Slc1a5Ratmembrane located_inIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5Ratmembrane located_inIEAUniRule:UR0001014291600115GO_REF:0000104UniProtGO_REF:0000104
Slc1a5Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Slc1a5Ratmembrane located_inIEAInterPro:IPR001991 and InterPro:IPR0364581600115GO_REF:0000002InterProGO_REF:0000002
Slc1a5Ratmembrane located_inISOSLC1A5 (Homo sapiens)1624291 PMID:29872227RGDPMID:29872227
Slc1a5Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Slc1a5Ratplasma membrane located_inIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5Ratplasma membrane is_active_inISOSlc1a5 (Mus musculus)1624291 PMID:14622120RGDPMID:14622120
Slc1a5Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Slc1a5Ratplasma membrane is_active_inIBAMGI:101931 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc1a5Ratplasma membrane located_inISOSLC1A5 (Homo sapiens)1624291 PMID:23492904 and PMID:24953180RGDPMID:23492904 and PMID:24953180
Slc1a5Ratplasma membrane located_inISOSLC1A5 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
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Molecular Function
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Original Reference(s)
Slc1a5Ratacidic amino acid transmembrane transporter activity enablesIEAARBA:ARBA000287651600115GO_REF:0000117UniProtGO_REF:0000117
Slc1a5Ratantiporter activity enablesIEAUniProtKB-KW:KW-00501600115GO_REF:0000043UniProtGO_REF:0000043
Slc1a5Ratantiporter activity enablesIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5Ratantiporter activity enablesISOSLC1A5 (Homo sapiens)1624291 PMID:23756778RGDPMID:23756778
Slc1a5Ratantiporter activity enablesIDA 158013776PMID:10698697UniProt 
Slc1a5RatL-amino acid transmembrane transporter activity enablesIEAARBA:ARBA000287681600115GO_REF:0000117UniProtGO_REF:0000117
Slc1a5RatL-aspartate transmembrane transporter activity enablesIDA 21201277PMID:14622120ARUK-UCL 
Slc1a5RatL-aspartate transmembrane transporter activity enablesIBAMGI:105305 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc1a5RatL-aspartate transmembrane transporter activity enablesISOSlc1a5 (Mus musculus)1624291 PMID:14622120RGDPMID:14622120
Slc1a5RatL-glutamine transmembrane transporter activity enablesISOSLC1A5 (Homo sapiens)1624291 PMID:29872227RGDPMID:29872227
Slc1a5RatL-glutamine transmembrane transporter activity enablesIEAUniProtKB:Q15758 and ensembl:ENSP000004444081600115GO_REF:0000107EnsemblGO_REF:0000107
Slc1a5RatL-serine transmembrane transporter activity  IDA 1642943astrocytesRGD 
Slc1a5Ratligand-gated channel activity enablesIDA 158013776PMID:10698697UniProt 
Slc1a5Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Slc1a5Ratneutral L-amino acid transmembrane transporter activity enablesIBAMGI:101931 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc1a5Ratneutral L-amino acid transmembrane transporter activity enablesISOSlc1a5 (Mus musculus)1624291 PMID:10933718RGDPMID:10933718
Slc1a5Ratprotein binding enablesISOSLC1A5 (Homo sapiens)1624291UniProtKB:A5PKU2 more ...RGDPMID:23492904 more ...
Slc1a5Ratsymporter activity enablesIEAUniRule:UR0001014291600115GO_REF:0000104UniProtGO_REF:0000104
Slc1a5Ratsymporter activity enablesIEAInterPro:IPR001991 and InterPro:IPR0364581600115GO_REF:0000002InterProGO_REF:0000002
Slc1a5Ratsymporter activity enablesIEAUniProtKB-KW:KW-07691600115GO_REF:0000043UniProtGO_REF:0000043
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Imported Annotations - SMPDB


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Reference Title
Reference Citation
1. The astroglial ASCT2 amino acid transporter as a mediator of glutamine efflux. Broer A, etal., J Neurochem 1999 Nov;73(5):2184-94.
2. Neutral amino acid transporter ASCT2 displays substrate-induced Na+ exchange and a substrate-gated anion conductance. Bröer A, etal., Biochem J. 2000 Mar 15;346 Pt 3(Pt 3):705-10.
3. Tissue-based metabolomics reveals metabolic biomarkers and potential therapeutic targets for esophageal squamous cell carcinoma. Chen Z, etal., J Pharm Biomed Anal. 2021 Apr 15;197:113937. doi: 10.1016/j.jpba.2021.113937. Epub 2021 Feb 5.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Clinicopathological significance of LAT1 and ASCT2 in patients with surgically resected esophageal squamous cell carcinoma. Honjo H, etal., J Surg Oncol. 2016 Mar;113(4):381-9. doi: 10.1002/jso.24160. Epub 2016 Mar 3.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Cardiac glutaminolysis: a maladaptive cancer metabolism pathway in the right ventricle in pulmonary hypertension. Piao L, etal., J Mol Med (Berl). 2013 Oct;91(10):1185-97. doi: 10.1007/s00109-013-1064-7. Epub 2013 Jun 21.
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. Identification of a plasma membrane glutamine transporter from the rat hepatoma cell line H4-IIE-C3. Pollard M, etal., Biochem J 2002 Nov 15;368(Pt 1):371-5.
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. The l-isomer-selective transport of aspartic acid is mediated by ASCT2 at the blood-brain barrier. Tetsuka K, etal., J Neurochem. 2003 Nov;87(4):891-901. doi: 10.1046/j.1471-4159.2003.02063.x.
14. Prognostic significance of amino-acid transporter expression (LAT1, ASCT2, and xCT) in surgically resected tongue cancer. Toyoda M, etal., Br J Cancer. 2014 May 13;110(10):2506-13. doi: 10.1038/bjc.2014.178. Epub 2014 Apr 24.
15. Characterization of rapid and high-affinity uptake of L-serine in neurons and astrocytes in primary culture. Yamamoto T, etal., FEBS Lett. 2003 Jul 31;548(1-3):69-73.
16. Clinical significance of coexpression of L-type amino acid transporter 1 (LAT1) and ASC amino acid transporter 2 (ASCT2) in lung adenocarcinoma. Yazawa T, etal., Am J Transl Res. 2015 Jun 15;7(6):1126-39. eCollection 2015.
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PMID:10933718   PMID:15581847   PMID:17475673   PMID:19192626   PMID:19946888   PMID:20448142   PMID:20458337   PMID:20599776   PMID:20977479   PMID:23492904   PMID:23581544   PMID:26459476  
PMID:27272177   PMID:29872227   PMID:32242892  



Slc1a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,584,949 - 86,599,052 (+)NCBIGRCr8
mRatBN7.2177,456,849 - 77,470,952 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,456,694 - 77,470,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,837,237 - 82,851,346 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,401,281 - 91,415,390 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,592,328 - 84,606,437 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,710,686 - 78,724,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,710,539 - 78,724,794 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,957,648 - 79,971,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,111,082 - 77,125,166 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,189,192 - 77,203,276 (+)NCBI
Celera171,941,916 - 71,956,019 (+)NCBICelera
Cytogenetic Map1q21NCBI
SLC1A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,774,883 - 46,788,594 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,774,883 - 46,788,594 (-)EnsemblGRCh38hg38GRCh38
GRCh371947,278,140 - 47,291,851 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,969,980 - 51,983,653 (-)NCBINCBI36Build 36hg18NCBI36
Build 341951,969,981 - 51,983,653NCBI
Celera1944,082,395 - 44,096,097 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,702,915 - 43,716,958 (-)NCBIHuRef
CHM1_11947,280,017 - 47,293,715 (-)NCBICHM1_1
T2T-CHM13v2.01949,600,712 - 49,614,415 (-)NCBIT2T-CHM13v2.0
Slc1a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,515,259 - 16,532,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,515,265 - 16,532,199 (+)EnsemblGRCm39 Ensembl
GRCm38716,781,334 - 16,798,274 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,781,340 - 16,798,274 (+)EnsemblGRCm38mm10GRCm38
MGSCv37717,366,695 - 17,383,623 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,939,929 - 15,956,765 (+)NCBIMGSCv36mm8
Celera713,979,416 - 13,996,329 (+)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
Slc1a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955574798,004 - 806,631 (-)NCBIChiLan1.0ChiLan1.0
SLC1A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,922,399 - 52,939,392 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11954,793,572 - 54,807,596 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01943,765,001 - 43,778,981 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,294,052 - 52,308,159 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,294,655 - 52,307,529 (-)Ensemblpanpan1.1panPan2
SLC1A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,150,205 - 109,161,375 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,150,205 - 109,161,141 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,630,028 - 108,640,938 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,676,678 - 109,687,827 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,676,206 - 109,688,731 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,353,817 - 109,364,724 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,988,004 - 108,998,931 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,856,686 - 109,867,593 (+)NCBIUU_Cfam_GSD_1.0
Slc1a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,980,757 - 18,992,747 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936664598,468 - 610,698 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936664599,012 - 610,689 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC1A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,647,438 - 52,661,459 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,647,432 - 52,661,464 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,026,660 - 48,032,162 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC1A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,139,417 - 40,150,312 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607319,833,875 - 19,850,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc1a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,831,368 - 6,838,593 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,830,799 - 6,839,118 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc1a5
83 total Variants

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:71
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000021455, ENSRNOT00000064332
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat

1 to 10 of 46 rows
D1Wox77  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2177,470,700 - 77,470,898 (+)MAPPERmRatBN7.2
Rnor_6.0178,724,538 - 78,724,735NCBIRnor6.0
Rnor_5.0179,971,500 - 79,971,697UniSTSRnor5.0
RGSC_v3.4177,124,915 - 77,125,112UniSTSRGSC3.4
Celera171,955,768 - 71,955,965UniSTS
Cytogenetic Map1q21UniSTS
AU048745  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5q32UniSTS
Cytogenetic Map13q24UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16p14UniSTS
Cytogenetic Map13q26UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map1q54UniSTS
Cytogenetic Map1q36UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map8q31UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map13p13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map10q31UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map3p13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000021455   ⟹   ENSRNOP00000021455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,456,694 - 77,470,952 (+)Ensembl
Rnor_6.0 Ensembl178,710,539 - 78,724,794 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000064332   ⟹   ENSRNOP00000060053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,456,694 - 77,470,952 (+)Ensembl
Rnor_6.0 Ensembl178,711,077 - 78,724,259 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111666   ⟹   ENSRNOP00000084829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,456,694 - 77,470,952 (+)Ensembl
RefSeq Acc Id: NM_175758   ⟹   NP_786934
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,584,949 - 86,599,052 (+)NCBI
mRatBN7.2177,456,849 - 77,470,952 (+)NCBI
Rnor_6.0178,710,686 - 78,724,789 (+)NCBI
Rnor_5.0179,957,648 - 79,971,751 (+)NCBI
RGSC_v3.4177,111,082 - 77,125,166 (+)RGD
Celera171,941,916 - 71,956,019 (+)RGD
Sequence:
RefSeq Acc Id: XM_039103908   ⟹   XP_038959836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,586,005 - 86,599,052 (+)NCBI
mRatBN7.2177,457,908 - 77,470,938 (+)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_786934 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959836 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH80242 (Get FASTA)   NCBI Sequence Viewer  
  AAM94351 (Get FASTA)   NCBI Sequence Viewer  
  BAR72488 (Get FASTA)   NCBI Sequence Viewer  
  CAA10803 (Get FASTA)   NCBI Sequence Viewer  
  D3ZJ25 (Get FASTA)   NCBI Sequence Viewer  
  EDM08307 (Get FASTA)   NCBI Sequence Viewer  
  EDM08308 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021455
  ENSRNOP00000060053.4
1 to 11 of 11 rows
RefSeq Acc Id: NP_786934   ⟸   NM_175758
- UniProtKB: D3ZJ25 (UniProtKB/Swiss-Prot),   Q9Z1J7 (UniProtKB/TrEMBL),   F7F8V1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021455   ⟸   ENSRNOT00000021455
Ensembl Acc Id: ENSRNOP00000060053   ⟸   ENSRNOT00000064332
RefSeq Acc Id: XP_038959836   ⟸   XM_039103908
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000084829   ⟸   ENSRNOT00000111666

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJ25-F1-model_v2 AlphaFold D3ZJ25 1-554 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689738
Promoter ID:EPDNEW_R262
Type:multiple initiation site
Name:Slc1a5_1
Description:solute carrier family 1 member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0178,710,534 - 78,710,594EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60595 BioCyc
Ensembl Genes ENSRNOG00000015948 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021455 ENTREZGENE
  ENSRNOT00000064332.4 UniProtKB/Swiss-Prot
Gene3D-CATH Sodium:dicarboxylate symporter UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7100054 IMAGE-MGC_LOAD
InterPro DAACS UniProtKB/Swiss-Prot
  Na-dicarboxylate_symporter UniProtKB/Swiss-Prot
  Na-dicarboxylate_symporter_CS UniProtKB/Swiss-Prot
  Na:dicarbo_symporter_sf UniProtKB/Swiss-Prot
MGC_CLONE MGC:91449 IMAGE-MGC_LOAD
NCBI Gene 292657 ENTREZGENE
PANTHER NEUTRAL AMINO ACID TRANSPORTER B(0) UniProtKB/Swiss-Prot
  SODIUM/DICARBOXYLATE SYMPORTER-RELATED UniProtKB/Swiss-Prot
Pfam SDF UniProtKB/Swiss-Prot
PhenoGen Slc1a5 PhenoGen
PRINTS EDTRNSPORT UniProtKB/Swiss-Prot
PROSITE NA_DICARBOXYL_SYMP_1 UniProtKB/Swiss-Prot
  NA_DICARBOXYL_SYMP_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015948 RatGTEx
Superfamily-SCOP Proton glutamate symport protein UniProtKB/Swiss-Prot
UniProt A0A8I6GC77_RAT UniProtKB/TrEMBL
  AAAT_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  F7F8V1 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z1J7 ENTREZGENE, UniProtKB/TrEMBL
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Slc1a5  solute carrier family 1 member 5  Slc1a5  solute carrier family 1 (neutral amino acid transporter), member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-19 Slc1a5  solute carrier family 1 (neutral amino acid transporter), member 5  Slc1a7  solute carrier family 1, member 7  Data merged from RGD:628679 737654 APPROVED
2006-03-30 Slc1a5  solute carrier family 1 (neutral amino acid transporter), member 5    sodium-dependent neutral amino acid transporter ASCT2  Name updated 1299863 APPROVED
2004-09-10 Slc1a5  sodium-dependent neutral amino acid transporter ASCT2  Asct2    Symbol and Name updated 1299863 APPROVED
2003-02-27 Slc1a7  solute carrier family 1, member 7      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression expressed in the hepatoma cell line H4-IIE-C3 628314
gene_function catalyses Na+-dependent glutamine uptake 628314
gene_homology loop region between transmembrane helices 3 and 4 shares less than 60% sequence similarity with region from ASCT2 in rat liver 628314
gene_homology nucleotide sequence is 86.4% identical to the rat ASCT2 gene (GenBank AJ132846) 628314
gene_product member of the ASCT/B0 family of transporters 628314
gene_protein 551 amino acid protein 628314