Alg10 (ALG10, alpha-1,2-glucosyltransferase) - Rat Genome Database

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Gene: Alg10 (ALG10, alpha-1,2-glucosyltransferase) Rattus norvegicus
Analyze
Symbol: Alg10
Name: ALG10, alpha-1,2-glucosyltransferase
RGD ID: 708500
Description: Predicted to enable dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity. Involved in potassium ion transmembrane transport. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in long QT syndrome 2. Orthologous to several human genes including ALG10 (ALG10 alpha-1,2-glucosyltransferase); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Alg10b; alpha-1,2-glucosyltransferase ALG10-A; alpha-2-glucosyltransferase ALG10-B; asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase); asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog; asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe); asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B; asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (S. pombe); asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast); asparagine-linked glycosylation protein 10 homolog B; dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase; KCR1; LOC245960; potassium channel regulator 1; putative alpha-1,2-glucosyltransferase ALG10-B; putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase
RGD Orthologs
Human
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87123,214,636 - 123,225,104 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7123,214,636 - 123,225,104 (+)EnsemblGRCr8
mRatBN7.27121,335,048 - 121,345,517 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7121,335,042 - 121,340,308 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7123,130,038 - 123,135,298 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07125,356,097 - 125,361,357 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07125,292,610 - 125,297,871 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07131,330,913 - 131,336,183 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7131,330,913 - 131,336,183 (+)Ensemblrn6Rnor6.0
Rnor_5.07131,010,627 - 131,015,654 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47128,613,369 - 128,618,635 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7117,794,570 - 117,799,842 (+)NCBICelera
RGSC_v3.17128,647,598 - 128,659,656 (+)NCBI
Cytogenetic Map7q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KCR1, a membrane protein that facilitates functional expression of non-inactivating K+ currents associates with rat EAG voltage-dependent K+ channels. Hoshi N, etal., J Biol Chem 1998 Sep 4;273(36):23080-5.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14525949   PMID:18231597   PMID:24303013  


Genomics

Comparative Map Data
Alg10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87123,214,636 - 123,225,104 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7123,214,636 - 123,225,104 (+)EnsemblGRCr8
mRatBN7.27121,335,048 - 121,345,517 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7121,335,042 - 121,340,308 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7123,130,038 - 123,135,298 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07125,356,097 - 125,361,357 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07125,292,610 - 125,297,871 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07131,330,913 - 131,336,183 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7131,330,913 - 131,336,183 (+)Ensemblrn6Rnor6.0
Rnor_5.07131,010,627 - 131,015,654 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47128,613,369 - 128,618,635 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7117,794,570 - 117,799,842 (+)NCBICelera
RGSC_v3.17128,647,598 - 128,659,656 (+)NCBI
Cytogenetic Map7q35NCBI
ALG10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381234,022,377 - 34,028,302 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1234,022,468 - 34,029,694 (+)Ensemblhg38GRCh38
GRCh371234,175,431 - 34,181,237 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361234,066,483 - 34,072,504 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341234,066,482 - 34,072,501NCBI
Celera1213,983,778 - 13,989,799 (+)NCBICelera
Cytogenetic Map12p11.1NCBI
HuRef1233,915,997 - 33,922,020 (+)NCBIHuRef
CHM1_11234,140,208 - 34,146,227 (+)NCBICHM1_1
T2T-CHM13v2.01233,899,971 - 33,905,896 (+)NCBIT2T-CHM13v2.0
LOC102004837
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555051,844,005 - 1,854,229 (-)NCBIChiLan1.0ChiLan1.0
LOC100971669
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21062,693,193 - 62,707,171 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11262,682,413 - 62,703,474 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01252,142,613 - 52,178,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11254,773,993 - 54,781,456 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1254,776,822 - 54,781,149 (-)EnsemblpanPan2panpan1.1
Alg10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494575,565,697 - 75,576,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366072,404,592 - 2,409,789 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366072,404,592 - 2,409,774 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALG10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11133,459,530 - 33,464,416 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660691,334,805 - 1,346,594 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101710247
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247782,131,698 - 2,136,026 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247782,126,488 - 2,135,971 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Alg10
46 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:391
Count of miRNA genes:231
Interacting mature miRNAs:273
Transcripts:ENSRNOT00000019672
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7118556868125929417Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat

Markers in Region
D7Wox49  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87123,219,929 - 123,220,027 (+)Marker Load Pipeline
Rnor_6.07131,336,217 - 131,336,315NCBIRnor6.0
Cytogenetic Map7q34UniSTS
BF398723  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27121,334,503 - 121,334,696 (+)MAPPERmRatBN7.2
Rnor_6.07131,330,375 - 131,330,567NCBIRnor6.0
Rnor_5.07131,010,089 - 131,010,281UniSTSRnor5.0
RGSC_v3.47128,612,831 - 128,613,023UniSTSRGSC3.4
Celera7117,794,032 - 117,794,224UniSTS
RH 3.4 Map7965.0UniSTS
Cytogenetic Map7q34UniSTS
RH137265  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27121,345,127 - 121,345,311 (+)MAPPERmRatBN7.2
Rnor_6.07131,341,241 - 131,341,424NCBIRnor6.0
Rnor_5.07131,020,698 - 131,020,881UniSTSRnor5.0
RGSC_v3.47128,625,038 - 128,625,221UniSTSRGSC3.4
Celera7117,804,614 - 117,804,797UniSTS
RH 3.4 Map7964.9UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019672   ⟹   ENSRNOP00000019672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7121,335,042 - 121,340,308 (+)Ensembl
Rnor_6.0 Ensembl7131,330,913 - 131,336,183 (+)Ensembl
RefSeq Acc Id: NM_139101   ⟹   NP_620801
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87123,214,636 - 123,225,104 (+)NCBI
mRatBN7.27121,335,048 - 121,345,517 (+)NCBI
Rnor_6.07131,330,913 - 131,336,183 (+)NCBI
Rnor_5.07131,010,627 - 131,015,654 (+)NCBI
RGSC_v3.47128,613,369 - 128,618,635 (+)RGD
Celera7117,794,570 - 117,799,842 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_620801 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC34249 (Get FASTA)   NCBI Sequence Viewer  
  EDL76589 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019672.2
  ENSRNOP00000103043
GenBank Protein O88788 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620801   ⟸   NM_139101
- UniProtKB: O88788 (UniProtKB/Swiss-Prot),   A6K7P5 (UniProtKB/TrEMBL),   A6K7P6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019672   ⟸   ENSRNOT00000019672

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88788-F1-model_v2 AlphaFold O88788 1-474 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695595
Promoter ID:EPDNEW_R6119
Type:initiation region
Name:Alg10_1
Description:ALG10, alpha-1,2-glucosyltransferase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07131,330,919 - 131,330,979EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708500 AgrOrtholog
BioCyc Gene G2FUF-32414 BioCyc
BioCyc Pathway MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS [protein N-glycosylation initial phase (eukaryotic)] BioCyc
BioCyc Pathway Image MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS BioCyc
Ensembl Genes ENSRNOG00000014511 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000066498 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000019672.6 UniProtKB/Swiss-Prot
  ENSRNOT00000094416 ENTREZGENE
InterPro Alg10 UniProtKB/Swiss-Prot
KEGG Report rno:245960 UniProtKB/Swiss-Prot
NCBI Gene 245960 ENTREZGENE
PANTHER DOL-P-GLC:GLC(2)MAN(9)GLCNAC(2)-PP-DOL ALPHA-1,2-GLUCOSYLTRANSFERASE-RELATED UniProtKB/Swiss-Prot
  PTHR12989 UniProtKB/Swiss-Prot
Pfam DIE2_ALG10 UniProtKB/Swiss-Prot
PhenoGen Alg10 PhenoGen
PIRSF Alpha1_2_glucosyltferase_Alg10 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014511 RatGTEx
  ENSRNOG00000066498 RatGTEx
UniProt A6K7P5 ENTREZGENE, UniProtKB/TrEMBL
  A6K7P6 ENTREZGENE, UniProtKB/TrEMBL
  AG10B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-20 Alg10  ALG10, alpha-1,2-glucosyltransferase  Alg10  asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Alg10  asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)  Alg10b  asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Alg10b  asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (S. pombe)  Alg10b  asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-04 Alg10b  asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)  Alg10b  asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Alg10b  asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)  LOC245960  potassium channel regulator 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 LOC245960        Symbol and Name status set to provisional 70820 PROVISIONAL