Nifk (nucleolar protein interacting with the FHA domain of MKI67) - Rat Genome Database

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Gene: Nifk (nucleolar protein interacting with the FHA domain of MKI67) Rattus norvegicus
Analyze
Symbol: Nifk
Name: nucleolar protein interacting with the FHA domain of MKI67
RGD ID: 708462
Description: Predicted to enable RNA binding activity. Predicted to be located in condensed nuclear chromosome; cytoplasm; and nucleoplasm. Predicted to be active in nucleolus. Orthologous to human NIFK (nucleolar protein interacting with the FHA domain of MKI67); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC246042; MGC105693; Mki67 (FHA domain) interacting nucleolar phosphoprotein; MKI67 FHA domain-interacting nucleolar phosphoprotein; Mki67ip; nucleolar protein interacting with the FHA domain of pKI-67; spermatogenesis-related protein (Srp)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81331,946,119 - 31,955,950 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1331,946,108 - 31,959,561 (+)EnsemblGRCr8
mRatBN7.21329,393,303 - 29,403,387 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,393,286 - 29,405,896 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1331,978,161 - 31,987,965 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,265,997 - 33,275,801 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01330,537,771 - 30,547,584 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1331,342,707 - 31,352,512 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1331,536,862 - 31,546,667 (+)NCBILyon_Normotensive
Lyon_Hypertensive1331,524,111 - 31,533,916 (+)NCBILyon_Hypertensive
F344_StmMcwi1331,450,467 - 31,460,273 (+)NCBIF344_StmMcwi
Rnor_6.01334,267,442 - 34,277,543 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,267,471 - 34,277,530 (+)Ensemblrn6Rnor6.0
Rnor_5.01339,397,736 - 39,407,837 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41330,944,169 - 30,953,973 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1329,298,808 - 29,308,614 (+)NCBICelera
RGSC_v3.11330,952,883 - 30,956,664 (-)NCBI
Cytogenetic Map13q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-phenylbutyric acid  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
inulin  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP,ISO)
phenol red  (ISO)
phorone  (EXP)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA,ISO)
condensed nuclear chromosome  (IEA,ISO)
cytoplasm  (IEA,ISO)
nucleolus  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. A novel nucleolar protein, NIFK, interacts with the forkhead associated domain of Ki-67 antigen in mitosis. Takagi M, etal., J Biol Chem 2001 Jul 6;276(27):25386-91. Epub 2001 May 7.
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:19389623   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Nifk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81331,946,119 - 31,955,950 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1331,946,108 - 31,959,561 (+)EnsemblGRCr8
mRatBN7.21329,393,303 - 29,403,387 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,393,286 - 29,405,896 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1331,978,161 - 31,987,965 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,265,997 - 33,275,801 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01330,537,771 - 30,547,584 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1331,342,707 - 31,352,512 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1331,536,862 - 31,546,667 (+)NCBILyon_Normotensive
Lyon_Hypertensive1331,524,111 - 31,533,916 (+)NCBILyon_Hypertensive
F344_StmMcwi1331,450,467 - 31,460,273 (+)NCBIF344_StmMcwi
Rnor_6.01334,267,442 - 34,277,543 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,267,471 - 34,277,530 (+)Ensemblrn6Rnor6.0
Rnor_5.01339,397,736 - 39,407,837 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41330,944,169 - 30,953,973 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1329,298,808 - 29,308,614 (+)NCBICelera
RGSC_v3.11330,952,883 - 30,956,664 (-)NCBI
Cytogenetic Map13q11NCBI
NIFK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382121,726,945 - 121,736,875 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2121,726,945 - 121,736,912 (-)Ensemblhg38GRCh38
GRCh372122,484,521 - 122,494,451 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362122,201,024 - 122,210,938 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342122,200,783 - 122,210,698NCBI
Celera2115,809,158 - 115,819,140 (-)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2114,807,419 - 114,817,401 (-)NCBIHuRef
CHM1_12122,488,064 - 122,498,044 (-)NCBICHM1_1
T2T-CHM13v2.02122,162,220 - 122,172,150 (-)NCBIT2T-CHM13v2.0
Nifk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,249,573 - 118,261,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,249,569 - 118,261,552 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381118,321,843 - 118,333,831 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,321,839 - 118,333,822 (+)Ensemblmm10GRCm38
MGSCv371120,218,420 - 120,230,408 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361120,149,394 - 120,161,135 (+)NCBIMGSCv36mm8
Celera1120,982,370 - 120,994,365 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.14NCBI
Nifk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,315,967 - 8,324,765 (+)Ensembl
ChiLan1.0NW_0049554598,315,893 - 8,325,141 (+)NCBIChiLan1.0ChiLan1.0
NIFK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21353,902,079 - 53,912,250 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B53,917,059 - 53,927,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B38,524,416 - 38,534,302 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B122,413,494 - 122,422,953 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B122,413,494 - 122,422,953 (-)EnsemblpanPan2panpan1.1
NIFK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11928,486,049 - 28,498,711 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1928,486,062 - 28,498,151 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1928,744,930 - 28,756,332 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01929,851,968 - 29,864,625 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1929,851,998 - 29,864,474 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11928,549,245 - 28,562,206 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01928,719,450 - 28,732,616 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01929,899,819 - 29,912,784 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nifk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530392,614,662 - 92,623,554 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646948,994,003 - 49,005,522 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646948,984,370 - 49,003,058 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIFK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1529,714,297 - 29,754,978 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11529,719,024 - 29,734,811 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21534,678,377 - 34,692,410 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NIFK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1108,554,373 - 8,563,865 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl108,554,583 - 8,563,817 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606114,138,650 - 14,148,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nifk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473223,470,175 - 23,478,427 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473223,470,077 - 23,478,795 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nifk
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11010,880,361 - 10,890,419 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nifk
71 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:141
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000061619
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134785618Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131228551734884386Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13143736554Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131228551734884386Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13600200847359539Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13308875548088755Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13600200837088115Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13134785618Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000061619   ⟹   ENSRNOP00000058336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1331,946,108 - 31,959,561 (+)Ensembl
mRatBN7.2 Ensembl1329,393,286 - 29,405,896 (+)Ensembl
Rnor_6.0 Ensembl1334,267,471 - 34,277,530 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092802   ⟹   ENSRNOP00000076005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1331,946,307 - 31,959,561 (+)Ensembl
mRatBN7.2 Ensembl1329,393,473 - 29,405,896 (+)Ensembl
Rnor_6.0 Ensembl1334,267,614 - 34,273,463 (+)Ensembl
RefSeq Acc Id: NM_139186   ⟹   NP_631925
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81331,946,146 - 31,955,950 (+)NCBI
mRatBN7.21329,393,328 - 29,403,132 (+)NCBI
Dahl_SR_JrHsd1331,342,707 - 31,352,512 (+)NCBI
Lyon_Normotensive1331,536,862 - 31,546,667 (+)NCBI
Lyon_Hypertensive1331,524,111 - 31,533,916 (+)NCBI
F344_StmMcwi1331,450,467 - 31,460,273 (+)NCBI
Rnor_6.01334,267,471 - 34,277,275 (+)NCBI
Rnor_5.01339,397,736 - 39,407,837 (+)NCBI
RGSC_v3.41330,944,169 - 30,953,973 (+)RGD
Celera1329,298,808 - 29,308,614 (+)RGD
Sequence:
RefSeq Acc Id: XM_017598665   ⟹   XP_017454154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81331,946,119 - 31,955,950 (+)NCBI
mRatBN7.21329,393,303 - 29,403,387 (+)NCBI
Rnor_6.01334,267,442 - 34,277,543 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_631925 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454154 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86585 (Get FASTA)   NCBI Sequence Viewer  
  EDL87904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000058336
GenBank Protein Q5RJM0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_631925   ⟸   NM_139186
- UniProtKB: Q5RJM0 (UniProtKB/Swiss-Prot),   A6K7V9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454154   ⟸   XM_017598665
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QSI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076005   ⟸   ENSRNOT00000092802
Ensembl Acc Id: ENSRNOP00000058336   ⟸   ENSRNOT00000061619
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RJM0-F1-model_v2 AlphaFold Q5RJM0 1-271 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698759
Promoter ID:EPDNEW_R9283
Type:initiation region
Name:Nifk_1
Description:nucleolar protein interacting with the FHA domain of MKI67
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01334,267,474 - 34,267,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708462 AgrOrtholog
BioCyc Gene G2FUF-18541 BioCyc
Ensembl Genes ENSRNOG00000025701 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000061619 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7308059 IMAGE-MGC_LOAD
InterPro NIFK_FHA_Ki67_binding UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report rno:246042 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105693 IMAGE-MGC_LOAD
NCBI Gene 246042 ENTREZGENE
PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN UniProtKB/Swiss-Prot
Pfam hNIFK_binding UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Nifk PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000025701 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A1B0GWS6_RAT UniProtKB/TrEMBL
  A0A8L2QSI2 ENTREZGENE, UniProtKB/TrEMBL
  A6K7V9 ENTREZGENE, UniProtKB/TrEMBL
  MK67I_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Nifk  nucleolar protein interacting with the FHA domain of MKI67  Mki67ip  Mki67 (FHA domain) interacting nucleolar phosphoprotein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-04-06   Mki67 (FHA domain) interacting nucleolar phosphoprotein  Mki67ip  spermatogenesis-related protein (Srp)  Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2004-09-10 Mki67ip  spermatogenesis-related protein (Srp)  LOC246042    Symbol and Name updated 1299863 APPROVED