Exoc5 (exocyst complex component 5) - Rat Genome Database

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Gene: Exoc5 (exocyst complex component 5) Rattus norvegicus
Analyze
Symbol: Exoc5
Name: exocyst complex component 5
RGD ID: 708408
Description: Predicted to enable small GTPase binding activity. Predicted to be involved in Golgi to plasma membrane transport; exocytosis; and protein localization to plasma membrane. Predicted to act upstream of or within with a negative effect on epithelial cell apoptotic process. Predicted to act upstream of or within several processes, including establishment of planar polarity; homeostasis of number of cells within a tissue; and non-motile cilium assembly. Predicted to be located in cytoplasm and midbody. Predicted to be part of exocyst. Orthologous to human EXOC5 (exocyst complex component 5); PARTICIPATES IN insulin signaling pathway; INTERACTS WITH ammonium chloride; bisphenol A; flavonoids.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 71 kDa component of rsec6/8 secretory complex; component of rsec6/8 secretory complex p71 (71 kDa); exocyst complex component Sec10; LOC60627; p71 component of rsec6/8 secretory complex; SEC10-like 1; SEC10-like 1 (S. cerevisiae); Sec10l1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,788,738 - 24,834,941 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1524,790,337 - 24,834,970 (-)EnsemblGRCr8
mRatBN7.21522,310,682 - 22,355,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1522,308,946 - 22,355,335 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1525,085,965 - 25,130,482 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01526,049,400 - 26,093,947 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01524,294,462 - 24,338,978 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01525,888,757 - 25,933,302 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1525,887,070 - 25,933,268 (-)Ensemblrn6Rnor6.0
Rnor_5.01529,811,327 - 29,855,874 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41525,008,521 - 25,053,098 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1522,687,639 - 22,732,184 (-)NCBICelera
RGSC_v3.11525,024,574 - 25,068,570 (-)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
exocyst  (IBA)
midbody  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Characterization of a cDNA encoding a subunit of the rat brain rsec6/8 complex. Hazuka CD, etal., Gene 1997 Mar 10;187(1):67-73.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:18480549   PMID:24056301   PMID:26040895   PMID:26046524   PMID:26582389   PMID:31593505  


Genomics

Comparative Map Data
Exoc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,788,738 - 24,834,941 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1524,790,337 - 24,834,970 (-)EnsemblGRCr8
mRatBN7.21522,310,682 - 22,355,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1522,308,946 - 22,355,335 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1525,085,965 - 25,130,482 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01526,049,400 - 26,093,947 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01524,294,462 - 24,338,978 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01525,888,757 - 25,933,302 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1525,887,070 - 25,933,268 (-)Ensemblrn6Rnor6.0
Rnor_5.01529,811,327 - 29,855,874 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41525,008,521 - 25,053,098 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1522,687,639 - 22,732,184 (-)NCBICelera
RGSC_v3.11525,024,574 - 25,068,570 (-)NCBI
Cytogenetic Map15p14NCBI
EXOC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381457,200,507 - 57,268,905 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1457,200,507 - 57,268,974 (-)Ensemblhg38GRCh38
GRCh371457,667,225 - 57,735,623 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361456,738,947 - 56,805,370 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341456,739,867 - 56,805,376NCBI
Celera1437,719,278 - 37,785,703 (-)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1437,833,989 - 37,900,415 (-)NCBIHuRef
CHM1_11457,607,847 - 57,674,254 (-)NCBICHM1_1
T2T-CHM13v2.01451,406,949 - 51,475,352 (-)NCBIT2T-CHM13v2.0
Exoc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391449,249,379 - 49,304,124 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1449,241,547 - 49,304,110 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381449,011,922 - 49,066,667 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1449,004,090 - 49,066,653 (-)Ensemblmm10GRCm38
MGSCv371449,631,819 - 49,686,342 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361447,934,094 - 47,988,618 (-)NCBIMGSCv36mm8
Celera1445,212,944 - 45,267,371 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.36NCBI
Exoc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546611,116,907 - 11,191,911 (-)Ensembl
ChiLan1.0NW_00495546611,115,902 - 11,191,353 (-)NCBIChiLan1.0ChiLan1.0
EXOC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21558,311,238 - 58,375,449 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11457,527,752 - 57,591,954 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01437,775,555 - 37,839,751 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11456,046,142 - 56,110,468 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1456,050,175 - 56,089,615 (-)EnsemblpanPan2panpan1.1
EXOC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1832,789,311 - 32,848,045 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl832,778,715 - 32,848,050 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha832,556,919 - 32,615,671 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0833,039,719 - 33,098,885 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,043,978 - 33,098,848 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1832,642,956 - 32,702,061 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0832,718,881 - 32,777,624 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0833,094,536 - 33,153,654 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Exoc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864072,329,052 - 72,401,349 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364951,790,285 - 1,863,273 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364951,790,357 - 1,862,647 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1186,377,458 - 186,529,728 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11186,376,134 - 186,430,206 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21206,958,653 - 206,996,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EXOC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12434,388,155 - 34,449,832 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2434,388,119 - 34,450,442 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605322,607,944 - 22,672,732 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248842,242,040 - 2,312,266 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248842,239,614 - 2,311,500 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Exoc5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11273,985,132 - 74,031,698 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Exoc5
328 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:35
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000067735
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000067735   ⟹   ENSRNOP00000062799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,790,398 - 24,834,943 (-)Ensembl
mRatBN7.2 Ensembl1522,308,946 - 22,355,322 (-)Ensembl
Rnor_6.0 Ensembl1525,887,070 - 25,933,268 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095143   ⟹   ENSRNOP00000079183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,790,337 - 24,834,970 (-)Ensembl
mRatBN7.2 Ensembl1522,310,700 - 22,355,335 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000152900   ⟹   ENSRNOP00000101318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,790,398 - 24,824,066 (-)Ensembl
RefSeq Acc Id: NM_022204   ⟹   NP_071540
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,790,396 - 24,834,941 (-)NCBI
mRatBN7.21522,310,759 - 22,355,306 (-)NCBI
Rnor_6.01525,888,757 - 25,933,302 (-)NCBI
Rnor_5.01529,811,327 - 29,855,874 (-)NCBI
RGSC_v3.41525,008,521 - 25,053,098 (-)RGD
Celera1522,687,639 - 22,732,184 (-)RGD
Sequence:
RefSeq Acc Id: XM_039093635   ⟹   XP_038949563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,788,738 - 24,834,825 (-)NCBI
mRatBN7.21522,310,682 - 22,355,332 (-)NCBI
RefSeq Acc Id: XM_063274610   ⟹   XP_063130680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,797,666 - 24,834,825 (-)NCBI
Protein Sequences
Protein RefSeqs NP_071540 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949563 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130680 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC53096 (Get FASTA)   NCBI Sequence Viewer  
  AAI28740 (Get FASTA)   NCBI Sequence Viewer  
  EDL88388 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000062799
  ENSRNOP00000062799.2
GenBank Protein P97878 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071540   ⟸   NM_022204
- UniProtKB: A1A5N5 (UniProtKB/Swiss-Prot),   P97878 (UniProtKB/Swiss-Prot),   A6KE83 (UniProtKB/TrEMBL),   A0A8I5ZM73 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062799   ⟸   ENSRNOT00000067735
RefSeq Acc Id: XP_038949563   ⟸   XM_039093635
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZM73 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079183   ⟸   ENSRNOT00000095143
RefSeq Acc Id: XP_063130680   ⟸   XM_063274610
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000101318   ⟸   ENSRNOT00000152900
Protein Domains
Exocyst complex component Sec10 N-terminal   Exocyst complex component Sec10-like alpha-helical

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97878-F1-model_v2 AlphaFold P97878 1-708 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699617
Promoter ID:EPDNEW_R10141
Type:initiation region
Name:Exoc5_1
Description:exocyst complex component 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01525,933,272 - 25,933,332EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708408 AgrOrtholog
BioCyc Gene G2FUF-14111 BioCyc
Ensembl Genes ENSRNOG00000013804 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000067735 ENTREZGENE
  ENSRNOT00000067735.4 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8362342 IMAGE-MGC_LOAD
InterPro Sec10-like UniProtKB/Swiss-Prot
  Sec10_HB UniProtKB/Swiss-Prot
  Sec10_N UniProtKB/Swiss-Prot
KEGG Report rno:60627 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156649 IMAGE-MGC_LOAD
NCBI Gene 60627 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 5 UniProtKB/Swiss-Prot
  PTHR12100 UniProtKB/Swiss-Prot
Pfam Sec10 UniProtKB/Swiss-Prot
  Sec10_N UniProtKB/Swiss-Prot
PhenoGen Exoc5 PhenoGen
RatGTEx ENSRNOG00000013804 RatGTEx
UniProt A0A8I5ZM73 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L072_RAT UniProtKB/TrEMBL
  A1A5N5 ENTREZGENE
  A6KE83 ENTREZGENE, UniProtKB/TrEMBL
  EXOC5_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A1A5N5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Exoc5  exocyst complex component 5  Sec10l1  SEC10-like 1 (S. cerevisiae)  Symbol and Name updated 1299863 APPROVED
2005-07-08 Sec10l1  SEC10-like 1 (S. cerevisiae)  LOC60627  component of rsec6/8 secretory complex p71 (71 kDa)  Symbol and Name updated 1299863 APPROVED