Tmem33 (transmembrane protein 33) - Rat Genome Database

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Gene: Tmem33 (transmembrane protein 33) Rattus norvegicus
Analyze
Symbol: Tmem33
Name: transmembrane protein 33
RGD ID: 708371
Description: Predicted to be involved in several processes, including endoplasmic reticulum tubular network organization; positive regulation of endoplasmic reticulum unfolded protein response; and regulation of endoplasmic reticulum tubular network organization. Predicted to be located in endoplasmic reticulum membrane; melanosome; and nuclear envelope. Predicted to be active in endoplasmic reticulum. Orthologous to human TMEM33 (transmembrane protein 33); INTERACTS WITH 17beta-estradiol; acetamide; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: db83; LOC59303
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,242,358 - 41,264,586 (-)NCBIGRCr8
mRatBN7.21440,888,485 - 40,910,715 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1440,885,712 - 40,910,715 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1441,234,616 - 41,256,847 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01442,534,696 - 42,556,927 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01441,015,491 - 41,037,722 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01442,537,352 - 42,559,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,535,701 - 42,560,174 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01442,333,379 - 42,355,562 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41443,495,963 - 43,516,901 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11443,498,867 - 43,519,292 (-)NCBI
Celera1440,042,568 - 40,064,657 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Cloning of a novel rat gene, DB83, that encodes a putative membrane protein. Nakadai T, etal., DNA Res 1998 Oct 30;5(5):315-7.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:17081065   PMID:17110338   PMID:23376485   PMID:25612671   PMID:26268696  


Genomics

Comparative Map Data
Tmem33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,242,358 - 41,264,586 (-)NCBIGRCr8
mRatBN7.21440,888,485 - 40,910,715 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1440,885,712 - 40,910,715 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1441,234,616 - 41,256,847 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01442,534,696 - 42,556,927 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01441,015,491 - 41,037,722 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01442,537,352 - 42,559,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,535,701 - 42,560,174 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01442,333,379 - 42,355,562 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41443,495,963 - 43,516,901 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11443,498,867 - 43,519,292 (-)NCBI
Celera1440,042,568 - 40,064,657 (-)NCBICelera
Cytogenetic Map14p11NCBI
TMEM33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38441,935,137 - 41,960,803 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl441,935,129 - 41,960,803 (+)EnsemblGRCh38hg38GRCh38
GRCh37441,937,446 - 41,962,820 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36441,631,926 - 41,652,580 (+)NCBINCBI36Build 36hg18NCBI36
Build 34441,778,096 - 41,798,751NCBI
Celera442,381,148 - 42,406,836 (+)NCBICelera
Cytogenetic Map4p13NCBI
HuRef441,259,038 - 41,284,726 (+)NCBIHuRef
CHM1_1441,937,631 - 41,963,316 (+)NCBICHM1_1
T2T-CHM13v2.0441,908,187 - 41,934,614 (+)NCBIT2T-CHM13v2.0
Tmem33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39567,417,908 - 67,448,804 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl567,417,908 - 67,448,804 (+)EnsemblGRCm39 Ensembl
GRCm38567,260,565 - 67,291,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl567,260,565 - 67,291,461 (+)EnsemblGRCm38mm10GRCm38
MGSCv37567,651,891 - 67,682,700 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36567,539,787 - 67,570,596 (+)NCBIMGSCv36mm8
Celera564,569,775 - 64,594,015 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map536.0NCBI
Tmem33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,747,699 - 5,773,773 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,747,681 - 5,773,759 (-)NCBIChiLan1.0ChiLan1.0
TMEM33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2342,120,006 - 42,145,850 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1442,313,370 - 42,348,116 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0436,260,669 - 36,281,546 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1442,108,335 - 42,133,910 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl442,108,335 - 42,127,575 (+)Ensemblpanpan1.1panPan2
TMEM33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11339,013,799 - 39,039,059 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1339,013,855 - 39,052,547 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1338,989,700 - 39,027,859 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01339,504,153 - 39,542,337 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1339,504,178 - 39,542,911 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11339,194,205 - 39,232,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01339,305,198 - 39,343,358 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01339,770,675 - 39,808,630 (+)NCBIUU_Cfam_GSD_1.0
Tmem33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528537,131,680 - 37,159,499 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364829,137,920 - 9,166,860 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364829,138,752 - 9,166,555 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl833,012,390 - 33,036,993 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1833,012,540 - 33,036,448 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2834,667,109 - 34,688,275 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,402,481 - 8,423,306 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl278,404,044 - 8,423,314 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604754,712,138 - 54,733,780 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476124,987,555 - 25,014,993 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476124,983,553 - 25,014,582 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem33
86 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:822
Count of miRNA genes:317
Interacting mature miRNAs:415
Transcripts:ENSRNOT00000003128
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142216796767167967Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000003128   ⟹   ENSRNOP00000003128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,888,485 - 40,910,715 (-)Ensembl
Rnor_6.0 Ensembl1442,535,701 - 42,560,174 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103727   ⟹   ENSRNOP00000082099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,885,712 - 40,910,709 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110302   ⟹   ENSRNOP00000097007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,888,485 - 40,910,715 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112406   ⟹   ENSRNOP00000091618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,906,717 - 40,910,709 (-)Ensembl
RefSeq Acc Id: NM_001034198   ⟹   NP_001029370
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,242,358 - 41,264,586 (-)NCBI
mRatBN7.21440,888,485 - 40,910,715 (-)NCBI
Rnor_6.01442,537,352 - 42,559,580 (-)NCBI
Rnor_5.01442,333,379 - 42,355,562 (-)NCBI
RGSC_v3.41443,495,963 - 43,516,901 (-)RGD
Celera1440,042,568 - 40,064,657 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021671   ⟹   NP_067703
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,242,358 - 41,264,586 (-)NCBI
mRatBN7.21440,888,485 - 40,910,715 (-)NCBI
Rnor_6.01442,537,352 - 42,559,580 (-)NCBI
Rnor_5.01442,333,379 - 42,355,562 (-)NCBI
RGSC_v3.41443,495,963 - 43,516,901 (-)RGD
Celera1440,042,568 - 40,064,657 (-)NCBI
Sequence:
RefSeq Acc Id: NP_067703   ⟸   NM_021671
- Peptide Label: isoform 1
- UniProtKB: Q9Z142 (UniProtKB/Swiss-Prot),   A6JDA7 (UniProtKB/TrEMBL),   A6JDA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029370   ⟸   NM_001034198
- Peptide Label: isoform 2
- UniProtKB: A0A0H2UHA6 (UniProtKB/TrEMBL),   A6JDA6 (UniProtKB/TrEMBL),   A6JDA8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003128   ⟸   ENSRNOT00000003128
Ensembl Acc Id: ENSRNOP00000082099   ⟸   ENSRNOT00000103727
Ensembl Acc Id: ENSRNOP00000097007   ⟸   ENSRNOT00000110302
Ensembl Acc Id: ENSRNOP00000091618   ⟸   ENSRNOT00000112406

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z142-F1-model_v2 AlphaFold Q9Z142 1-247 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699305
Promoter ID:EPDNEW_R9830
Type:initiation region
Name:Tmem33_1
Description:transmembrane protein 33
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01442,559,565 - 42,559,625EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708371 AgrOrtholog
BioCyc Gene G2FUF-15774 BioCyc
Ensembl Genes ENSRNOG00000002254 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055018414 UniProtKB/Swiss-Prot
  ENSRNOG00060014529 UniProtKB/Swiss-Prot
  ENSRNOG00065013507 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003128.5 UniProtKB/TrEMBL
  ENSRNOT00000103727.1 UniProtKB/TrEMBL
  ENSRNOT00000110302.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112406.1 UniProtKB/TrEMBL
  ENSRNOT00055031283 UniProtKB/Swiss-Prot
  ENSRNOT00060024878 UniProtKB/Swiss-Prot
  ENSRNOT00065022233 UniProtKB/Swiss-Prot
InterPro PER33/POM33_regulator UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMEM33/Pom33 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:59303 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 59303 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 33 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 33 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 33 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 33 UniProtKB/TrEMBL
Pfam UPF0121 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem33 PhenoGen
RatGTEx ENSRNOG00000002254 RatGTEx
  ENSRNOG00055018414 RatGTEx
  ENSRNOG00060014529 RatGTEx
  ENSRNOG00065013507 RatGTEx
UniProt A0A0H2UHA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AC11_RAT UniProtKB/TrEMBL
  A0A8I6G8Z8_RAT UniProtKB/TrEMBL
  A6JDA6 ENTREZGENE, UniProtKB/TrEMBL
  A6JDA7 ENTREZGENE, UniProtKB/TrEMBL
  A6JDA8 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z142 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Tmem33  transmembrane protein 33  LOC59303  db83  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in liver, lung, brain, and kidney 1299400