Fabp7 (fatty acid binding protein 7) - Rat Genome Database

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Gene: Fabp7 (fatty acid binding protein 7) Rattus norvegicus
Analyze
Symbol: Fabp7
Name: fatty acid binding protein 7
RGD ID: 69312
Description: Predicted to enable fatty acid binding activity. Involved in epithelial cell proliferation. Predicted to be located in several cellular components, including cell projection; cell-cell junction; and neuronal cell body. Predicted to be active in cytosol and nucleus. Orthologous to human FABP7 (fatty acid binding protein 7); PARTICIPATES IN eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: B-FABP; BLBP; brain lipid-binding protein; brain-type fatty acid-binding protein; fatty acid binding protein 7 brain; fatty acid binding protein 7, brain; fatty acid-binding protein 7; fatty acid-binding protein, brain
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82037,667,125 - 37,673,299 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2037,669,601 - 37,675,907 (+)EnsemblGRCr8
mRatBN7.22037,123,193 - 37,126,725 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2037,123,193 - 37,126,880 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2038,155,265 - 38,158,796 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02037,545,977 - 37,549,508 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02038,273,007 - 38,276,541 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02040,769,624 - 40,773,156 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2040,769,586 - 40,773,349 (+)Ensemblrn6Rnor6.0
Rnor_5.02042,501,163 - 42,504,695 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42036,812,518 - 36,816,050 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2038,435,937 - 38,439,468 (+)NCBICelera
RGSC_v3.12036,826,317 - 36,829,850 (+)NCBI
Cytogenetic Map20q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
9-cis-retinoic acid  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-hexylcinnamaldehyde  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Brodifacoum  (EXP)
bromobenzene  (EXP)
bromuconazole  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chenodeoxycholic acid  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (EXP)
corn oil  (EXP)
corticosterone  (EXP)
cytarabine  (ISO)
diarsenic trioxide  (ISO)
diethyl maleate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP,ISO)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
furan  (EXP)
glycidyl methacrylate  (ISO)
indometacin  (EXP)
isotretinoin  (ISO)
L-methionine  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (EXP)
methamphetamine  (EXP)
methapyrilene  (EXP)
methimazole  (EXP)
methylmercury chloride  (EXP,ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
N-nitrosomorpholine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nitrofen  (EXP)
paclitaxel  (ISO)
paracetamol  (ISO)
parathion  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenethyl caffeate  (EXP)
phenylmercury acetate  (ISO)
phthalaldehyde  (ISO)
pirinixic acid  (EXP)
pyrazinecarboxamide  (EXP)
reserpine  (EXP)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
streptozocin  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
tetrachloromethane  (ISO)
tetracycline  (ISO)
thalidomide  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
vorinostat  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Role of Fabp7, a downstream gene of Pax6, in the maintenance of neuroepithelial cells during early embryonic development of the rat cortex. Arai Y, etal., J Neurosci. 2005 Oct 19;25(42):9752-61.
2. Cloning and characterization of a cDNA encoding a novel fatty acid binding protein from rat brain. Bennett E, etal., J Neurochem 1994 Nov;63(5):1616-24.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme. Liang Y, etal., Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5814-9. Epub 2005 Apr 12.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:11133151   PMID:12477932   PMID:12971893   PMID:15965470   PMID:18001149   PMID:23996503   PMID:25433207   PMID:29048614  


Genomics

Comparative Map Data
Fabp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82037,667,125 - 37,673,299 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2037,669,601 - 37,675,907 (+)EnsemblGRCr8
mRatBN7.22037,123,193 - 37,126,725 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2037,123,193 - 37,126,880 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2038,155,265 - 38,158,796 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02037,545,977 - 37,549,508 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02038,273,007 - 38,276,541 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02040,769,624 - 40,773,156 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2040,769,586 - 40,773,349 (+)Ensemblrn6Rnor6.0
Rnor_5.02042,501,163 - 42,504,695 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42036,812,518 - 36,816,050 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2038,435,937 - 38,439,468 (+)NCBICelera
RGSC_v3.12036,826,317 - 36,829,850 (+)NCBI
Cytogenetic Map20q12NCBI
FABP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386122,749,201 - 122,784,074 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6122,779,716 - 122,784,074 (+)Ensemblhg38GRCh38
GRCh376123,070,346 - 123,105,219 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366123,142,345 - 123,146,918 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346123,142,344 - 123,146,915NCBI
Celera6123,844,958 - 123,849,530 (+)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6120,677,663 - 120,682,239 (+)NCBIHuRef
CHM1_16123,364,462 - 123,369,035 (+)NCBICHM1_1
T2T-CHM13v2.06123,937,487 - 123,972,367 (+)NCBIT2T-CHM13v2.0
Fabp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391057,661,019 - 57,664,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1057,660,977 - 57,664,546 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381057,784,923 - 57,788,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1057,784,881 - 57,788,450 (+)Ensemblmm10GRCm38
MGSCv371057,504,729 - 57,508,256 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361057,473,336 - 57,476,865 (+)NCBIMGSCv36mm8
Celera1058,602,332 - 58,605,859 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.25NCBI
Fabp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554364,642,584 - 4,646,172 (+)Ensembl
ChiLan1.0NW_0049554364,642,584 - 4,646,172 (+)NCBIChiLan1.0ChiLan1.0
FABP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25142,775,902 - 142,780,393 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16140,675,048 - 140,679,541 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06120,539,905 - 120,574,778 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16124,663,054 - 124,697,908 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6124,663,054 - 124,697,905 (+)EnsemblpanPan2panpan1.1
FABP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1162,084,372 - 62,088,547 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl161,967,129 - 62,088,547 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha162,894,007 - 62,898,188 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0162,288,652 - 62,292,833 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl162,171,111 - 62,314,381 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1162,222,930 - 62,227,107 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0162,010,994 - 62,015,175 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0162,659,387 - 62,663,563 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fabp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946112,979,582 - 112,983,528 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368021,092,404 - 1,101,672 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049368021,092,448 - 1,096,293 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl139,871,537 - 39,876,397 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1139,872,198 - 39,876,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2144,098,036 - 44,102,111 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FABP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11351,021,485 - 51,026,060 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1351,021,501 - 51,026,038 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604023,316,435 - 23,321,039 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fabp7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247988,426,825 - 8,430,939 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247988,426,819 - 8,430,949 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fabp7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11834,460,392 - 34,464,119 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fabp7
46 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:92
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000001079
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203215696745978663Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
AW529882  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22037,125,271 - 37,125,421 (+)MAPPERmRatBN7.2
Rnor_6.02040,771,703 - 40,771,852NCBIRnor6.0
Rnor_5.02042,503,242 - 42,503,391UniSTSRnor5.0
RGSC_v3.42036,814,597 - 36,814,746UniSTSRGSC3.4
Celera2038,438,015 - 38,438,164UniSTS
RH 3.4 Map20397.81UniSTS
Cytogenetic Map20q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
5 8 20 136 79 82 59 35 59 6 172 68 2 122 33 59 23 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000001079   ⟹   ENSRNOP00000001079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2037,669,601 - 37,675,907 (+)Ensembl
mRatBN7.2 Ensembl2037,123,193 - 37,126,725 (+)Ensembl
Rnor_6.0 Ensembl2040,769,586 - 40,773,349 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117243   ⟹   ENSRNOP00000085320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2037,669,630 - 37,673,293 (+)Ensembl
mRatBN7.2 Ensembl2037,123,217 - 37,126,880 (+)Ensembl
RefSeq Acc Id: NM_030832   ⟹   NP_110459
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,669,606 - 37,673,138 (+)NCBI
mRatBN7.22037,123,193 - 37,126,725 (+)NCBI
Rnor_6.02040,769,624 - 40,773,156 (+)NCBI
Rnor_5.02042,501,163 - 42,504,695 (+)NCBI
RGSC_v3.42036,812,518 - 36,816,050 (+)RGD
Celera2038,435,937 - 38,439,468 (+)RGD
Sequence:
RefSeq Acc Id: XM_063279555   ⟹   XP_063135625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,667,125 - 37,673,299 (+)NCBI
RefSeq Acc Id: XM_063279556   ⟹   XP_063135626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,668,110 - 37,673,299 (+)NCBI
Protein Sequences
Protein RefSeqs NP_110459 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135625 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135626 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA60455 (Get FASTA)   NCBI Sequence Viewer  
  EDL92887 (Get FASTA)   NCBI Sequence Viewer  
  EDL92888 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001079.4
GenBank Protein P55051 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_110459   ⟸   NM_030832
- UniProtKB: P55051 (UniProtKB/Swiss-Prot),   A6K4D4 (UniProtKB/TrEMBL),   A6K4D5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001079   ⟸   ENSRNOT00000001079
Ensembl Acc Id: ENSRNOP00000085320   ⟸   ENSRNOT00000117243
RefSeq Acc Id: XP_063135625   ⟸   XM_063279555
- Peptide Label: isoform X1
- UniProtKB: P55051 (UniProtKB/Swiss-Prot),   A6K4D4 (UniProtKB/TrEMBL),   A6K4D5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135626   ⟸   XM_063279556
- Peptide Label: isoform X1
- UniProtKB: P55051 (UniProtKB/Swiss-Prot),   A6K4D4 (UniProtKB/TrEMBL),   A6K4D5 (UniProtKB/TrEMBL)
Protein Domains
Cytosolic fatty-acid binding proteins   Lipocalin/cytosolic fatty-acid binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P55051-F1-model_v2 AlphaFold P55051 1-132 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701637
Promoter ID:EPDNEW_R12161
Type:single initiation site
Name:Fabp7_1
Description:fatty acid binding protein 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02040,769,621 - 40,769,681EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69312 AgrOrtholog
BioCyc Gene G2FUF-3581 BioCyc
Ensembl Genes ENSRNOG00000000814 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001079.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot
InterPro Calycin UniProtKB/Swiss-Prot
  Fatty_acid-bd UniProtKB/Swiss-Prot
  ILBP UniProtKB/Swiss-Prot
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot
KEGG Report rno:80841 UniProtKB/Swiss-Prot
NCBI Gene 80841 ENTREZGENE
PANTHER PTHR11955 UniProtKB/Swiss-Prot
Pfam Lipocalin UniProtKB/Swiss-Prot
PhenoGen Fabp7 PhenoGen
PRINTS FATTYACIDBP UniProtKB/Swiss-Prot
PROSITE FABP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000814 RatGTEx
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot
TIGR TC206007
UniProt A0A8I5ZZU4_RAT UniProtKB/TrEMBL
  A6K4D4 ENTREZGENE, UniProtKB/TrEMBL
  A6K4D5 ENTREZGENE, UniProtKB/TrEMBL
  FABP7_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Fabp7  fatty acid binding protein 7  Fabp7  fatty acid binding protein 7, brain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Fabp7  fatty acid binding protein 7, brain    fatty acid binding protein 7  Name updated 1299863 APPROVED
2002-06-10 Fabp7  fatty acid binding protein 7      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA expressed in brain and liver 68777
gene_expression brain mRNA levels are differentially expressed throughout development, peaking at birth and declining to a steady-state at 3 weeks 68777
gene_protein putative 132 aa protein with predicted size 15 kDa 68777