Sacm1l (SAC1 like phosphatidylinositide phosphatase) - Rat Genome Database

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Gene: Sacm1l (SAC1 like phosphatidylinositide phosphatase) Rattus norvegicus
Analyze
Symbol: Sacm1l
Name: SAC1 like phosphatidylinositide phosphatase
RGD ID: 69223
Description: Enables phosphatidylinositol-3,5-bisphosphate phosphatase activity; phosphatidylinositol-3-phosphate phosphatase activity; and phosphatidylinositol-4-phosphate phosphatase activity. Involved in neurotransmitter receptor transport to postsynaptic membrane; phosphatidylinositol dephosphorylation; and vesicle-mediated transport in synapse. Located in endoplasmic reticulum membrane and endoplasmic reticulum-plasma membrane contact site. Is active in glutamatergic synapse. Orthologous to human SACM1L (SAC1 like phosphatidylinositide phosphatase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: phosphatidylinositide phosphatase SAC1; phosphatidylinositol-3-phosphatase SAC1; phosphatidylinositol-4-phosphate phosphatase; Sac1; SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae); SAC1 (supressor of actin mutations 1, homolog)-like; SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae); SAC1 suppressor of actin mutations 1-like; SAC1 suppressor of actin mutations 1-like (yeast); suppressor of actin 1; suppressor of actin mutations 1-like protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88132,053,465 - 132,109,857 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8132,053,049 - 132,109,857 (+)EnsemblGRCr8
mRatBN7.28123,176,017 - 123,232,413 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8123,172,536 - 123,232,413 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8128,765,500 - 128,828,247 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,964,469 - 127,027,208 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,793,995 - 124,856,731 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,607,166 - 132,663,502 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,607,166 - 132,663,502 (+)Ensemblrn6Rnor6.0
Rnor_5.08131,759,866 - 131,816,202 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48128,302,927 - 128,359,950 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8122,286,384 - 122,342,572 (+)NCBICelera
RGSC_v3.18128,322,663 - 128,379,687 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Dynamic formation of ER-PM junctions presents a lipid phosphatase to regulate phosphoinositides. Dickson EJ, etal., J Cell Biol. 2016 Apr 11;213(1):33-48. doi: 10.1083/jcb.201508106. Epub 2016 Apr 4.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Functional characterization of a mammalian Sac1 and mutants exhibiting substrate-specific defects in phosphoinositide phosphatase activity. Nemoto Y, etal., J Biol Chem 2000 Nov 3;275(44):34293-305.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
8. JNK3 couples the neuronal stress response to inhibition of secretory trafficking. Yang G, etal., Sci Signal. 2013 Jul 9;6(283):ra57. doi: 10.1126/scisignal.2003727.
Additional References at PubMed
PMID:22632720   PMID:24209621   PMID:25013167   PMID:29461204   PMID:30659099   PMID:31505169   PMID:31806350  


Genomics

Comparative Map Data
Sacm1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88132,053,465 - 132,109,857 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8132,053,049 - 132,109,857 (+)EnsemblGRCr8
mRatBN7.28123,176,017 - 123,232,413 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8123,172,536 - 123,232,413 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8128,765,500 - 128,828,247 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,964,469 - 127,027,208 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,793,995 - 124,856,731 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,607,166 - 132,663,502 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,607,166 - 132,663,502 (+)Ensemblrn6Rnor6.0
Rnor_5.08131,759,866 - 131,816,202 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48128,302,927 - 128,359,950 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8122,286,384 - 122,342,572 (+)NCBICelera
RGSC_v3.18128,322,663 - 128,379,687 (+)NCBI
Cytogenetic Map8q32NCBI
SACM1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38345,689,396 - 45,745,409 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl345,689,056 - 45,745,425 (+)Ensemblhg38GRCh38
GRCh37345,730,888 - 45,786,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36345,705,947 - 45,761,905 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34345,705,946 - 45,761,904NCBI
Celera345,668,700 - 45,724,522 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef345,775,115 - 45,830,941 (+)NCBIHuRef
CHM1_1345,680,731 - 45,736,559 (+)NCBICHM1_1
T2T-CHM13v2.0345,705,375 - 45,761,083 (+)NCBIT2T-CHM13v2.0
Sacm1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,358,818 - 123,421,665 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9123,358,824 - 123,421,665 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389123,529,753 - 123,592,600 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,529,759 - 123,592,600 (+)Ensemblmm10GRCm38
MGSCv379123,439,000 - 123,501,716 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369123,378,580 - 123,441,296 (+)NCBIMGSCv36mm8
Celera9123,982,316 - 124,047,496 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map974.08NCBI
Sacm1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,229,840 - 26,280,516 (-)Ensembl
ChiLan1.0NW_00495542026,231,597 - 26,280,516 (-)NCBIChiLan1.0ChiLan1.0
SACM1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2245,653,967 - 45,709,677 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1345,658,749 - 45,714,444 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0345,596,775 - 45,652,482 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1346,704,539 - 46,760,105 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl346,704,565 - 46,760,104 (+)EnsemblpanPan2panpan1.1
SACM1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,731,674 - 42,791,455 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,720,249 - 42,791,402 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2042,648,744 - 42,708,307 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02043,216,790 - 43,276,240 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2043,216,794 - 43,276,251 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12042,457,062 - 42,516,486 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02042,864,579 - 42,923,977 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02043,139,544 - 43,199,143 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sacm1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118197,843,903 - 197,900,798 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936695196,116 - 253,139 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936695196,238 - 253,128 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SACM1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1328,817,132 - 28,891,685 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11328,816,977 - 28,906,503 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21331,719,695 - 31,794,148 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SACM1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,159,701 - 7,214,368 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl227,159,809 - 7,214,555 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041159,951,795 - 160,006,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sacm1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473075,113,012 - 75,169,561 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473075,107,294 - 75,169,527 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sacm1l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18114,654,457 - 114,712,678 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:444
Count of miRNA genes:245
Interacting mature miRNAs:302
Transcripts:ENSRNOT00000007223
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat

Markers in Region
D8Rat116  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28123,180,023 - 123,180,222 (+)MAPPERmRatBN7.2
Rnor_6.08132,611,122 - 132,611,318NCBIRnor6.0
Rnor_5.08131,763,822 - 131,764,018UniSTSRnor5.0
RGSC_v3.48128,306,882 - 128,307,079RGDRGSC3.4
RGSC_v3.48128,306,883 - 128,307,079UniSTSRGSC3.4
Celera8122,290,340 - 122,290,536UniSTS
RGSC_v3.18128,326,536 - 128,326,932RGD
SHRSP x BN Map884.17RGD
SHRSP x BN Map884.17UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000007223   ⟹   ENSRNOP00000007223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8132,064,241 - 132,109,857 (+)Ensembl
mRatBN7.2 Ensembl8123,186,796 - 123,232,413 (+)Ensembl
Rnor_6.0 Ensembl8132,607,166 - 132,663,502 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109426   ⟹   ENSRNOP00000080652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8132,053,426 - 132,109,855 (+)Ensembl
mRatBN7.2 Ensembl8123,172,536 - 123,232,413 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000160277   ⟹   ENSRNOP00000105071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8132,053,049 - 132,109,857 (+)Ensembl
RefSeq Acc Id: NM_001357497   ⟹   NP_001344426
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88132,053,465 - 132,109,857 (+)NCBI
mRatBN7.28123,176,017 - 123,232,413 (+)NCBI
RefSeq Acc Id: NM_053798   ⟹   NP_446250
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88132,053,465 - 132,109,857 (+)NCBI
mRatBN7.28123,176,017 - 123,232,413 (+)NCBI
Rnor_6.08132,607,166 - 132,663,502 (+)NCBI
Rnor_5.08131,759,866 - 131,816,202 (+)NCBI
RGSC_v3.48128,302,927 - 128,359,950 (+)RGD
Celera8122,286,384 - 122,342,572 (+)RGD
Sequence:
RefSeq Acc Id: XM_063264777   ⟹   XP_063120847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88132,068,271 - 132,109,857 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001344426 (Get FASTA)   NCBI Sequence Viewer  
  NP_446250 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120847 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76757 (Get FASTA)   NCBI Sequence Viewer  
  EDL76758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000105071
GenBank Protein Q9ES21 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446250   ⟸   NM_053798
- Peptide Label: isoform 1
- UniProtKB: Q9ES21 (UniProtKB/Swiss-Prot),   A6I4B9 (UniProtKB/TrEMBL),   A0A8L2Q2L9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007223   ⟸   ENSRNOT00000007223
RefSeq Acc Id: NP_001344426   ⟸   NM_001357497
- Peptide Label: isoform 1x
- UniProtKB: A0A8L2Q2L9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080652   ⟸   ENSRNOT00000109426
RefSeq Acc Id: XP_063120847   ⟸   XM_063264777
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000105071   ⟸   ENSRNOT00000160277
Protein Domains
SAC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ES21-F1-model_v2 AlphaFold Q9ES21 1-587 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696410
Promoter ID:EPDNEW_R6935
Type:initiation region
Name:Sacm1l_1
Description:SAC1 like phosphatidylinositide phosphatase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08132,607,110 - 132,607,170EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69223 AgrOrtholog
BioCyc Gene G2FUF-28612 BioCyc
BioCyc Pathway PWY-6368 [3-phosphoinositide degradation] BioCyc
BioCyc Pathway Image PWY-6368 BioCyc
Ensembl Genes ENSRNOG00000005149 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000160277 ENTREZGENE
InterPro SAC_dom UniProtKB/Swiss-Prot
KEGG Report rno:116482 UniProtKB/Swiss-Prot
NCBI Gene 116482 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 UniProtKB/Swiss-Prot
  PHOSPHATIDYLINOSITOL-3-PHOSPHATASE SAC1 UniProtKB/Swiss-Prot
Pfam Syja_N UniProtKB/Swiss-Prot
PhenoGen Sacm1l PhenoGen
PROSITE SAC UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005149 RatGTEx
TIGR TC217389
UniProt A0A8I5ZR90_RAT UniProtKB/TrEMBL
  A0A8L2Q2L9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LMY3_RAT UniProtKB/TrEMBL
  A6I4B9 ENTREZGENE, UniProtKB/TrEMBL
  Q9ES21 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-19 Sacm1l  SAC1 like phosphatidylinositide phosphatase  Sacm1l  SAC1 suppressor of actin mutations 1-like (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Sacm1l  SAC1 suppressor of actin mutations 1-like (yeast)  Sacm1l  SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Sacm1l  SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae)       Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to the endoplasmic reticulum 68842
gene_expression expressed in cerebellar Purkinje cells 68842