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Gene: St3gal2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2) Rattus norvegicus

Analyze

Symbol:

St3gal2

Name:

ST3 beta-galactoside alpha-2,3-sialyltransferase 2

RGD ID:

68413

Description:

Enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Involved in ganglioside biosynthetic process via lactosylceramide. Predicted to be located in Golgi membrane. Predicted to be active in membrane. Orthologous to human ST3GAL2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2); PARTICIPATES IN ganglioside metabolic pathway; globoside metabolic pathway; keratan sulfate biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

alpha 2,3-ST 2; beta-galactoside alpha-2,3-sialyltransferase 2; CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2; gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase; gal-NAc6S; monosialoganglioside sialyltransferase; sialyltransferase 4B (beta-galactoside alpha-2,3-sialyltransferase); sialyltransferase 5; SIAT4-B; Siat4b; Siat5; ST3Gal II; ST3GALA.2; ST3GalII

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	55,798,112 - 55,849,226 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	55,799,471 - 55,849,225 (+)	Ensembl				GRCr8
mRatBN7.2	19	38,888,851 - 38,939,874 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	38,923,999 - 38,939,869 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	45,728,513 - 45,744,388 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	46,381,856 - 46,397,731 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	48,692,765 - 48,708,643 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	43,273,251 - 43,324,265 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,274,493 - 43,290,363 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	54,101,504 - 54,152,583 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	40,873,202 - 40,889,072 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	38,316,282 - 38,332,162 (+)	NCBI		Celera
RGSC_v3.1	19	40,892,278 - 40,892,994 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alcohol use disorder (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

Butylbenzyl phthalate (ISO)

cannabidiol (ISO)

captan (ISO)

choline (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

dexamethasone (EXP)

diarsenic trioxide (ISO)

diazinon (ISO)

dicrotophos (ISO)

dieldrin (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

folpet (ISO)

furan (EXP)

gentamycin (EXP)

GSK-J4 (ISO)

hexadecanoic acid (ISO)

hydrogen cyanide (ISO)

L-methionine (ISO)

metformin (ISO)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (EXP)

ozone (ISO)

paracetamol (EXP)

phenylephrine (EXP)

phosgene (ISO)

pirinixic acid (ISO)

potassium cyanide (ISO)

raloxifene (ISO)

rotenone (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

testosterone (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

tunicamycin (ISO)

undecane (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ganglioside biosynthetic process (IDA,IEA,ISO)

globoside biosynthetic process (IEA,ISO,ISS)

glycolipid biosynthetic process (IEA,ISO)

glycoprotein biosynthetic process (IEA,ISO)

lipid metabolic process (IEA)

oligosaccharide biosynthetic process (IEA,ISO)

sialylation (IBA,IEA,ISO)

Cellular Component

extracellular region (IEA)

Golgi cisterna membrane (IEA)

Golgi membrane (IEA,ISO,ISS)

membrane (IBA)

Molecular Function

beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase activity (IEA,ISO)

beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (IBA,IDA,IEA,ISO)

glycosyltransferase activity (IEA)

protein homodimerization activity (IEA,ISO,ISS)

sialyltransferase activity (IDA,IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ganglioside metabolic pathway (IEA)

globoside metabolic pathway (IEA)

keratan sulfate biosynthetic pathway (IEA)

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Cloning and expression of cDNA for a new type of Gal beta 1,3GalNAc alpha 2,3-sialyltransferase.	Lee YC, etal., J Biol Chem 1994 Apr 1;269(13):10028-33.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	Chronic ethanol downregulates Gal-beta-1,4GlcNAc alpha 2,6-sialyltransferase and Gal-beta-1,3GlcNAc alpha 2,3-sialyltransferase mRNAs in rat liver.	Rao MN and Lakshman MR, Alcohol Clin Exp Res. 1997 Apr;21(2):348-51.
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:9184827	PMID:9266697	PMID:21913655

Genomics

Comparative Map Data

St3gal2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	55,798,112 - 55,849,226 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	55,799,471 - 55,849,225 (+)	Ensembl				GRCr8
mRatBN7.2	19	38,888,851 - 38,939,874 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	38,923,999 - 38,939,869 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	45,728,513 - 45,744,388 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	46,381,856 - 46,397,731 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	48,692,765 - 48,708,643 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	43,273,251 - 43,324,265 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,274,493 - 43,290,363 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	54,101,504 - 54,152,583 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	40,873,202 - 40,889,072 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	38,316,282 - 38,332,162 (+)	NCBI		Celera
RGSC_v3.1	19	40,892,278 - 40,892,994 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

ST3GAL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	70,375,977 - 70,439,100 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	70,375,977 - 70,439,263 (-)	Ensembl			hg38	GRCh38
GRCh37	16	70,409,880 - 70,473,003 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	68,970,839 - 69,030,492 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	68,972,809 - 69,030,492	NCBI
Celera	16	55,055,306 - 55,114,849 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	56,246,172 - 56,305,216 (-)	NCBI		HuRef
CHM1_1	16	71,820,818 - 71,880,362 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	76,187,004 - 76,250,128 (-)	NCBI		T2T-CHM13v2.0

St3gal2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	111,646,520 - 111,699,132 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	111,646,554 - 111,699,112 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	110,919,743 - 110,974,058 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	110,919,922 - 110,972,480 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	113,443,765 - 113,496,397 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	113,806,599 - 113,858,234 (+)	NCBI		MGSCv36	mm8
Celera	8	115,180,767 - 115,196,505 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	57.81	NCBI

St3gal2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	3,177,104 - 3,230,433 (-)	Ensembl
ChiLan1.0	NW_004955484	3,176,214 - 3,230,433 (-)	NCBI	ChiLan1.0	ChiLan1.0

ST3GAL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	83,726,255 - 83,789,200 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	89,655,506 - 89,715,192 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	54,577,578 - 54,637,626 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	70,218,738 - 70,240,162 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	70,218,748 - 70,240,162 (-)	Ensembl			panPan2	panpan1.1

ST3GAL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	76,377,782 - 76,427,998 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	76,379,702 - 76,394,525 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	76,339,604 - 76,389,857 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	76,814,457 - 76,864,970 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	76,796,878 - 76,864,417 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	76,636,437 - 76,687,020 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	76,459,670 - 76,510,167 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	76,951,528 - 77,002,224 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

St3gal2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	36,385,195 - 36,439,669 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	23,149,487 - 23,205,027 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	23,149,452 - 23,203,919 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ST3GAL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	13,402,345 - 13,419,378 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	13,402,336 - 13,456,495 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ST3GAL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	53,530,077 - 53,585,065 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	53,531,781 - 53,545,739 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	16,316,291 - 16,376,499 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

St3gal2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	12,623,730 - 12,680,436 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	12,623,966 - 12,680,430 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

St3gal2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	30,622,899 - 30,671,028 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in St3gal2
52 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	870
Count of miRNA genes:	291
Interacting mature miRNAs:	384
Transcripts:	ENSRNOT00000024248
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

BF387076

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	38,938,311 - 38,938,468 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,275,894 - 43,276,050	NCBI	Rnor6.0
Rnor_5.0	19	54,104,147 - 54,104,303	UniSTS	Rnor5.0
RGSC_v3.4	19	40,887,515 - 40,887,671	UniSTS	RGSC3.4
Celera	19	38,330,605 - 38,330,761	UniSTS
RH 3.4 Map	19	474.0	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH139813

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	38,939,013 - 38,939,204 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,275,158 - 43,275,348	NCBI	Rnor6.0
Rnor_5.0	19	54,103,411 - 54,103,601	UniSTS	Rnor5.0
RGSC_v3.4	19	40,888,217 - 40,888,407	UniSTS	RGSC3.4
Celera	19	38,331,307 - 38,331,497	UniSTS
RH 3.4 Map	19	481.5	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH140953

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	38,939,596 - 38,939,782 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,274,580 - 43,274,765	NCBI	Rnor6.0
Rnor_5.0	19	54,102,833 - 54,103,018	UniSTS	Rnor5.0
RGSC_v3.4	19	40,888,800 - 40,888,985	UniSTS	RGSC3.4
Celera	19	38,331,890 - 38,332,075	UniSTS
RH 3.4 Map	19	478.1	UniSTS
RH 3.4 Map	19	477.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

AA850466

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	38,939,565 - 38,939,782 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,274,580 - 43,274,796	NCBI	Rnor6.0
Rnor_5.0	19	54,102,833 - 54,103,049	UniSTS	Rnor5.0
RGSC_v3.4	19	40,888,769 - 40,888,985	UniSTS	RGSC3.4
Celera	19	38,331,859 - 38,332,075	UniSTS
RH 3.4 Map	19	477.9	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO404237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV769154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X76988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024248 ⟹ ENSRNOP00000024248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	55,799,471 - 55,849,225 (+)	Ensembl
mRatBN7.2 Ensembl	19	38,923,999 - 38,939,869 (+)	Ensembl
Rnor_6.0 Ensembl	19	43,274,493 - 43,290,363 (-)	Ensembl

RefSeq Acc Id:

NM_031695 ⟹ NP_113883

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,833,356 - 55,849,226 (+)	NCBI
mRatBN7.2	19	38,923,999 - 38,939,869 (+)	NCBI
Rnor_6.0	19	43,274,493 - 43,290,363 (-)	NCBI
Rnor_5.0	19	54,101,504 - 54,152,583 (-)	NCBI
RGSC_v3.4	19	40,873,202 - 40,889,072 (+)	RGD
Celera	19	38,316,282 - 38,332,162 (+)	RGD

Sequence:

show sequence

CCGTGGCTGGCCCCACAGTGGGCTGGGAAAGGATTGGCCACGGTGACAGCCGCCCCGTGGCCAG
CACAATGAAGTGCTCCCTTCGAGTGTGGTTCCTCTCTATGGCCTTCCTGCTGGTGTTCATTATG
TCTCTGCTCTTCACGTACTCACACCACAGCATGGCTACCTTGCCCTACCTGGACTCGGGGACTC
TGGGCGGAACACACCGAGTGAAGCTGGTACCGGGCTATACTGGGCAACAGCGCCTTGTCAAGGA
GGGGCTTTCGGGGAAAAGTTGTACCTGCAGTCGCTGCATGGGTGATGCCGGCACCTCTGAGTGG
TTTGACAGCCACTTTGACAGTAACATCTCACCTGTCTGGACGAGAGATAACATGAACCTCACCC
CGGATGTCCAGCGGTGGTGGATGATGCTGCAACCCCAATTCAAGTCACACAACACCAATGAAGT
GTTGGAGAAGCTCTTCCAGATCGTGCCCGGTGAGAACCCCTACCGCTTCCGGGACCCCCAGCAG
TGCCGGCGCTGTGCTGTGGTCGGGAACTCAGGCAACCTTCGGGGCTCTGGCTATGGGCAAGAAG
TGGACAGCCACAACTTTATCATGAGGATGAATCAGGCACCGACTGTAGGCTTTGAGAAGGATGT
TGGCAGCCGAACAACTCACCATTTCATGTACCCGGAGAGTGCCAAGAACCTGCCTGCCAACGTG
AGCTTTGTGCTGGTGCCCTTCAAGGCCCTGGACCTGATGTGGATTGCCAGCGCCCTCTCCACAG
GACAGATCCGATTCACCTATGCTCCAGTGAAGTCCTTCCTTCGAGTGGACAAAGAGAAGGTCCA
GATTTACAACCCAGCCTTCTTCAAGTACATCCATGACAGGTGGACCGAGCACCATGGCCGCTAC
CCCTCCACAGGAATGCTGGTGCTCTTCTTTGCACTACACGTGTGTGATGAGGTGAACGTGTATG
GGTTCGGGGCCGACAGCCGTGGCAACTGGCACCACTACTGGGAGAACAACCGGTACGCGGGCGA
GTTCCGGAAGACAGGCGTGCATGATGCCGACTTCGAAGCCCACATCATTGACATGCTGGCCAAG
GCCAGCAAGATTGAAGTCTACCGAGGGAACTGAGCAGCCTCAGGCGCCTTCAGAACCAGTCACT
TCAGGGTCTGGCAAGCGCCGGTTGCCGCCCACCAATCAGACTGCGCCGTCCCCAGCAACCAATC
AGTGCTGCAGTTGGGAGGAGCTTCTTTCTTAGCCAATCACACAACTCAAGGAGAACTTCCGGCG
CCGCCGTCTCCACCAATCATGGCCTTGGGAGGCGGCGGGCCTGGACCCCCTCCCCCAACCCCCA
ACCCCGCTTTGGATGAGAATTTTTCTGCTTTTTAAGAGGCCGGTCTGGGTCTGGGAGGGAGCAC
CTTGAACTGCTCATTTCCAGCTTAGTCCCGATGGGTGAGTGAAGCCCGCCAAAGAAATGTGGTC
CCGGCGAGATACTTTCCAGGGCATTCTGTGGCTCACCAGCTAGTAGGGGGTTGTATTCACTCCC
TAGTTGGGTTGACCTCCCTAGGGCCTCATTAGTGTCAGGAACGGGTAGGAAGCTCCACCGGGTC
ACATGCAAGGTGCTTCTCTCACGTGTGCCCTCACTCCTGTTCCCCACCACCTTCTCAGCGTCTG
TCCTTAGGTCCTGGGTCTCCTCTCCAGCTCACCTGTTGATTTGGAGACAAAATGAGACCACCGG
GACTCCGCTGCTTGTGCTCTCACACACGCGGCCCAAGTCTTTAGCCCTAAGGCGAGAGCAGCAG
GGTTGGACAGTAGGCTGGAAAGGAGTGCCCTGTGCATGTATCTTTTTCTTTCATTGTCACCCCA
AAGAGGAGCAGGCAGCCTCTTGCTTGGGTGTTGGATTTGCTTTGGATTCATACTTTAGTTACCC
TCCAGCTGCCAGGGATGGCTATCCAACCAAGATCGCTTGACAGTTGTTTGCAGGCCTTGCAGAT
GGCTCGGAGCTTTGCTGGGGAGGAGCAGATTGGTATCTGCCATGCATGGCTCCTCCTGTCCGCC
CCTTTACCATGCTTACTCGCCTGTTCTAACCTACTTTCCAGCTCCTAAAGGGCTGGTGAGTCAA
GAATCGGGTTACAACTGGAAGCTATTTGCATGACTTGACCCAGGTCAAAGTTGAGGTTCATTTG
GGAGAAAGGGCTTCAGTGAATGCCTCAGGCCCCAGAAAACACTTCCCTTCAGTGTCCACATAAT
AATTTCCCATTCTTAATGAGTTGACATTAACAAGCAGCTTCCTGGTTGGGGGACAGTCACACGT
AAGGAGTGTGTTAAAGTTTGGTATGAGGCAAATACCCCTAAAAACTAATATATGAAGAACTTTG
CTTGAATTTGTTCCTTCCAAGTTTCAAAAGCAGGGGTAGAGAAAAAGGGAGTATACCGAGAAGG
GCTGTAGCGGAACCTCTCAGGGCTCTAATCATCGTGCAGTCACTGTACCAGTGGCCGTTCTTGC
CTGTCTCCGCTCTCCCAAGAAGCTGCTGTGATGAGAAGTGGGAAAGTACTGCGATTACGACAAA
CAGTATTGAGAAGAAGAATTTATTTTTCCTCCTTTTGTTTTGCTTAAACCATGAGTCACCATTC
TAGAAAAGGTAGGTCCCAGCACCCACATCCTTTTTCTTCTACAGTTATTTAAACATTCAATTTT
TCCCTCTGTTTCTTTTCCTGAATTAAAAAGAACGAAGTCCATAGAGTTACTCATCTGTTCTGAA
CTGTACCCCTCATAGGTGATTCTGAGGAGGTAAAGATGTTTGGGGGAACAAGGCAACTCTGATA
ACCTCTTACACCTGAGAAGCCTTTTCATGGGCTCTGCACTCCGAAGTCCCCCCACAGAGGGCTG
AGTATTATGGTTTAGAAAAATCAATTTATTATGCCAGGCATGGTGGTATGTGCCTTTAATCCTA
GCAGTTAGGAGTCTGCAGCAGGAAAGTAAGTTAAAGGCTAGCCTCAGCTATATGGTAACTTTCA
AACTAACCTGGGCTATATGAGACCCTTTCTCAAGGGGAAAAAAGGGAACAAAAAAAAAAAAATC
CATTGTCCCCTCTTCAGATTCCTCTAAAAGAGTAATGCCTTGGGAAGAATTTCTGGTTCACCTG
AAATGGCCTTTTGTAAATACAGGGTCTTTATTACAGACTCATGTTGGTTTATCTCAGCACCCAT
AAAGCGGTCCTCTTCCTGTGA

hide sequence

RefSeq Acc Id:

XM_006255625 ⟹ XP_006255687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,799,446 - 55,848,734 (+)	NCBI
mRatBN7.2	19	38,890,065 - 38,939,874 (+)	NCBI
Rnor_6.0	19	43,273,251 - 43,324,265 (-)	NCBI
Rnor_5.0	19	54,101,504 - 54,152,583 (-)	NCBI

Sequence:

show sequence

CCTTTAGCTGGGCAGGGGTGGGGGGAGGGGCCGGGCTGAGCTGCAGCCGCGGCGCTCCGGGAGG
GCAGGGCCAGGCAAGGGCGGGACTGGCCTGAGGCAGGCGGACAGGAGAGCCGAGAAGCTAACGG
GTCCGGGCGCGGGAGGCGGCGGCGGCGGTGGTGGCGGCGGCGGCAGCTTTCTGCACGGGTGGAG
GCGGCGGCAGGAGCGGCAAGCATGGCCCGCGCGGCGCCCAGCGCAGACTGAGTGCTGTTTCCTG
CCTTTGATTGGATGGGGCCCAAGAGTCAGACATGTTTCCAGAGCCTGGCACCCTCTACAAGCTA
CGTGTTCATACAGAATCACAAGAAATCCAGAGAATGGTCATGCTGTGGCAGCCTGGCGCCTGAC
AGGTGTGGAAAAGCCTGCCAGGGGATCACTGCTGGGAGGAGCCAAGGACAGGACAGCCTCACCC
CAGAAGCAGGGGTGGGCAGAAGCTGCCCTGCCAGGGCCAACGGTCCCAGGAAGGAGTCTGGAGT
CCTAATGAGGAGCCCCGCACCAGCTCTGCCCACCCACATGGCGTAGTGTCTGGCATCTTGCTAA
GCAGCAGCTGTCCCCAGCTCCAGAGGACCCCACAGGATGCACGGACGGACGAGTAGGCGTTTGT
GATCGACTGTGCCCCTGCAGCAGGAGGCTCGATCTCCAGGAGAAAGGACCAGCACCTCTGATGA
GAAGCAGCAGTCCAGACGCTATGGAGAAAGTCTTGGTTTCTGCAACCCTGACGCCAGCGGAGAT
CACTGAGATTATTGGGTTTTTTTCTGGCCTTCAGTCATTCTCTTTTCCCCTGGCCAAGGAGTTG
GGCCAGGACGGCCTGCAAGTGTGATGAGGACTCGTGCATGGGATGCAGGCCTCCTAAAGCCCGT
GTGTTCTCTGCTGTAATCAGGGTTCCAGGGATTCCCCACTGCAGGGGAGGAGGGGCTGCCTTAG
TGTCTGCTCATGAGCCACAAGGACCCAGACTGCTCCAGACTGGACCTTTTCAAGCCACCAAAGA
GGGGGGTCCCCGGAGCTGGCAGCCAGCACTCACAAGGGACTAGAGGGCTGGGATGGACTGACCT
CTGCCTTGACGGGGCGGCAGAAGGCGCAGAACCTTTGTGGCCCAGCTAGTGACTGAGAGACCCG
ATGAAGTTCTGAGCAGAGGCTCTAGTGGCTCAGGGACCGGGGGGAGGGAGGGAGGCCATTCCTG
CTTTCTCCTTTTGTCGAGGGAAGGTGTGGCAAGAGTCCCCTGCCACACCTCGTGCCCCTATGCC
CTTTCCACGTGCTGCCCAAACCAGCAGACTGCACCGTGGCTGGCCCCACAGTGGGCTGGGAAAG
GATTGGCCACGGTGACAGCCGCCCCGTGGCCAGCACAATGAAGTGCTCCCTTCGAGTGTGGTTC
CTCTCTATGGCCTTCCTGCTGGTGTTCATTATGTCTCTGCTCTTCACGTACTCACACCACAGCA
TGGCTACCTTGCCCTACCTGGACTCGGGGACTCTGGGCGGAACACACCGAGTGAAGCTGGTACC
GGGCTATACTGGGCAACAGCGCCTTGTCAAGGAGGGGCTTTCGGGGAAAAGTTGTACCTGCAGT
CGCTGCATGGGTGATGCCGGCACCTCTGAGTGGTTTGACAGCCACTTTGACAGTAACATCTCAC
CTGTCTGGACGAGAGATAACATGAACCTCACCCCGGATGTCCAGCGGTGGTGGATGATGCTGCA
ACCCCAATTCAAGTCACACAACACCAATGAAGTGTTGGAGAAGCTCTTCCAGATCGTGCCCGGT
GAGAACCCCTACCGCTTCCGGGACCCCCAGCAGTGCCGGCGCTGTGCTGTGGTCGGGAACTCAG
GCAACCTTCGGGGCTCTGGCTATGGGCAAGAAGTGGACAGCCACAACTTTATCATGAGGATGAA
TCAGGCACCGACTGTAGGCTTTGAGAAGGATGTTGGCAGCCGAACAACTCACCATTTCATGTAC
CCGGAGAGTGCCAAGAACCTGCCTGCCAACGTGAGCTTTGTGCTGGTGCCCTTCAAGGCCCTGG
ACCTGATGTGGATTGCCAGCGCCCTCTCCACAGGACAGATCCGATTCACCTATGCTCCAGTGAA
GTCCTTCCTTCGAGTGGACAAAGAGAAGGTCCAGATTTACAACCCAGCCTTCTTCAAGTACATC
CATGACAGGTGGACCGAGCACCATGGCCGCTACCCCTCCACAGGAATGCTGGTGCTCTTCTTTG
CACTACACGTGTGTGATGAGGTGAACGTGTATGGGTTCGGGGCCGACAGCCGTGGCAACTGGCA
CCACTACTGGGAGAACAACCGGTACGCGGGCGAGTTCCGGAAGACAGGCGTGCATGATGCCGAC
TTCGAAGCCCACATCATTGACATGCTGGCCAAGGCCAGCAAGATTGAAGTCTACCGAGGGAACT
GAGCAGCCTCAGGCGCCTTCAGAACCAGTCACTTCAGGGTCTGGCAAGCGCCGGTTGCCGCCCA
CCAATCAGACTGCGCCGTCCCCAGCAACCAATCAGTGCTGCAGTTGGGAGGAGCTTCTTTCTTA
GCCAATCACACAACTCAAGGAGAACTTCCGGCGCCGCCGTCTCCACCAATCATGGCCTTGGGAG
GCGGCGGGCCTGGACCCCCTCCCCCAACCCCCAACCCCGCTTTGGATGAGAATTTTTCTGCTTT
TTAAGAGGCCGGTCTGGGTCTGGGAGGGAGCACCTTGAACTGCTCATTTCCAGCTTAGTCCCGA
TGGGTGAGTGAAGCCCGCCAAAGAAATGTGGTCCCGGCGAGATACTTTCCAGGGCATTCTGTGG
CTCACCAGCTAGTAGGGGGTTGTATTCACTCCCTAGTTGGGTTGACCTCCCTAGGGCCTCATTA
GTGTCAGGAACGGGTAGGAAGCTCCACCGGGTCACATGCAAGGTGCTTCTCTCACGTGTGCCCT
CACTCCTGTTCCCCACCACCTTCTCAGCGTCTGTCCTTAGGTCCTGGGTCTCCTCTCCAGCTCA
CCTGTTGATTTGGAGACAAAATGAGACCACCGGGACTCCGCTGCTTGTGCTCTCACACACGCGG
CCCAAGTCTTTAGCCCTAAGGCGAGAGCAGCAGGGTTGGACAGTAGGCTGGAAAGGAGTGCCCT
GTGCATGTATCTTTTTCTTTCATTGTCACCCCAAAGAGGAGCAGGCAGCCTCTTGCTTGGGTGT
TGGATTTGCTTTGGATTCATACTTTAGTTACCCTCCAGCTGCCAGGGATGGCTATCCAACCAAG
ATCGCTTGACAGTTGTTTGCAGGCCTTGCAGATGGCTCGGAGCTTTGCTGGGGAGGAGCAGATT
GGTATCTGCCATGCATGGCTCCTCCTGTCCGCCCCTTTACCATGCTTACTCGCCTGTTCTAACC
TACTTTCCAGCTCCTAAAGGGCTGGTGAGTCAAGAATCGGGTTACAACTGGAAGCTATTTGCAT
GACTTGACCCAGGTCAAAGTTGAGGTTCATTTGGGAGAAAGGGCTTCAGTGAATGCCTCAGGCC
CCAGAAAACACTTCCCTTCAGTGTCCACATAATAATTTCCCATTCTTAATGAGTTGACATTAAC
AAGCAGCTTCCTGGTTGGGGGACAGTCACACGTAAGGAGTGTGTTAAAGTTTGGTATGAGGCAA
ATACCCCTAAAAACTAATATATGAAGAACTTTGCTTGAATTTGTTCCTTCCAAGTTTCAAAAGC
AGGGGTAGAGAAAAAGGGAGTATACCGAGAAGGGCTGTAGCGGAACCTCTCAGGGCTCTAATCA
TCGTGCAGTCACTGTACCAGTGGCCGTTCTTGCCTGTCTCCGCTCTCCCAAGAAGCTGCTGTGA
TGAGAAGTGGGAAAGTACTGCGATTACGACAAACAGTATTGAGAAGAAGAATTTATTTTTCCTC
CTTTTGTTTTGCTTAAACCATGAGTCACCATTCTAGAAAAGGTAGGTCCCAGCACCCACATCCT
TTTTCTTCTACAGTTATTTAAACATTCAATTTTTCCCTCTGTTTCTTTTCCTGAATTAAAAAGA
ACGAAGTCCATAGAGTTACTCATCTGTTCTGAACTGTACCCCTCATAGGTGATTCTGAGGAGGT
AAAGATGTTTGGGGGAACAAGGCAACTCTGATAACCTCTTACACCTGAGAAGCCTTTTCATGGG
CTCTGCACTCCGAAGTCCCCCCACAGAGGGCTGAGTATTATGGTTTAGAAAAATCAATTTATTA
TGCCAGGCATGGTGGTATGTGCCTTTAATCCTAGCAGTTAGGAGTCTGCAGCAGGAAAGTAAGT
TAAAGGCTAGCCTCAGCTATATGGTAACTTTCAAACTAACCTGGGCTATATGAGACCCTTTCTC
AAGGGGAAAAAAGGGAACAAAAAAAAAAAAATCCATTGTCCCCTCTTCAGATTCCTCTAAAAGA
GTAATGCCTTGGGAAGAATTTCTGGTTCACCTGAAATGGCCTTTTGTAAATACAGGGTCTTTAT
TACAGACTCATGTTGGTTTATCTCAGCACCCATAAAGCGGTCCTCTTCCTGTGACTCTATGGTG
AGTTTTCTCAGGGGTTTTGACATTTTTCTGCTGACTCCATCCATACTACATGTGGCCAACAGCT
TGTTGACAGTACAACAAGGTGCTGTGCAAATGAACAGTTCTCTGGGACAGCTGCTGGGGGCAGA
TAGTACCTATCTCAGCTTGCCTATCACGAAGATGAATGCTTAAACCTCGGTAGAGTACCTGGAA
AACCGGGGCAAATGTTGGGTCTGCACCTTAAACCACTCACTAAAATAGGTGTCTCTCAGAACTA
AATTTCAAACCCCTACAGGTGGTAACTTTTTTTTTTTTTTCAATTTAAGAGAGTTCCTCTGTGT
AGCCCTGATTGTCCTGGGTCTCTCTGCAGACCAGGCTGTCCTCAAGTTCAGAAATCCTCCTGCC
TCTGCCTCCCACAGGTTGGGATTACAGATGTTCATTGTCACTGTCCAGATTACTTTTTTTCCAG
TTGTTATGACTCATTCCTACAGTCTGAGGGAGGTTGAGGAGGCATGCTAAATTTGTTTTGCTTT
TCTGAGAGGCTCTCCTGTACCTAGGCTCTGTAGACCAGGTTGGTCTCATTCCTAAGAGTTCCGT
CAGCTTTGTCTCCTGAGTTCAGGAACTAAAGACATGTGCCACCACTGCCCTGTGAGGGGACTTG
CTATTTAACTAAAAACAAAGACGCTTCCTTGATAACCTGGGCCATGGGGTTTTGCCCTGTGGTT
GTTTAACTCTTCTGTGATGGTTTCTGAAACTGGGGCAGGAAGACTGTTCTGTTAAAATAGGACA
AATGTGGAGGCTGCATTAGAGTTTTATGTACAGAGACAGGACCTATCAGGACTGACACTAGGGT
AGCTGGGTAGAATCAGCTATGATCTGGATGAGCCATTTTGCACCATTCCTAGTCCACAGACTAT
CTGCCTTGTGATTTCTATTTTGCTTTTTTGGGACAGGGTTTCTCTTTGCAGACCAGGCTGGCCT
CAAACCCAGAGATCTGTCTTCCTCTGCTTTGGCAGTGCTGGAGTGTGCCACCAGCACCCCACTA
TCTGCCCTCTTCCCTTTTTTAACTTTACATGTGTTGGTGTTTTGCCTGAGTATGTGTCAGATCC
CCTGAAACCCGAGTTACAGTTCTGGGTTGTCCTGTAAGTGCTGGGACTTGATCCTGGATCCGCT
GGAAGGGCAGCTACTGGTGTCAACTGCTGAGCTTTCTATCCAGTCCTTTCTGCCTTGTTTTTAA
GACGATATGTTCTTCA

hide sequence

RefSeq Acc Id:

XM_006255626 ⟹ XP_006255688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,799,447 - 55,848,734 (+)	NCBI
mRatBN7.2	19	38,890,065 - 38,939,874 (+)	NCBI
Rnor_6.0	19	43,273,251 - 43,324,265 (-)	NCBI
Rnor_5.0	19	54,101,504 - 54,152,583 (-)	NCBI

Sequence:

show sequence

CCTTTAGCTGGGCAGGGGTGGGGGGAGGGGCCGGGCTGAGCTGCAGCCGCGGCGCTCCGGGAGG
GCAGGGCCAGGCAAGGGCGGGACTGGCCTGAGGCAGGCGGACAGGAGAGCCGAGAAGCTAACGG
GTCCGGGCGCGGGAGGCGGCGGCGGCGGTGGTGGCGGCGGCGGCAGCTTTCTGCACGGGTGGAG
GCGGCGGCAGGAGCGGCAAGCATGGCCCGCGCGGCGCCCAGCGCAGACTGAGTGCTGTTTCCTG
CCTTTGATTGGATGGGGCCCAAGAGTCAGACATGTTTCCAGAGCCTGGCACCCTCTACAAGCTA
CGTGTTCATACAGAATCACAAGAAATCCAGAGAATGAAAATTTGAAATCCAGGGAGAGCTCTTC
CTGTCCCACCACAAGGCTGCATTGGTTAATTTAGGAGAACAATTGCCCTGTGGCCCTAACTGCT
GGCTCCCCTTCCTTGGCTGCATGTCCTTGCTGAGAATTGTGGCGTGGCGAGGCCTGTGACCATC
TGATTCCTGACCTTTGGGCTCATGGGCTGGAGAGTATCCAGGGTCATGCTGTGGCAGCCTGGCG
CCTGACAGGTGTGGAAAAGCCTGCCAGGGGATCACTGCTGGGAGGAGCCAAGGACAGGACAGCC
TCACCCCAGAAGCAGGGGTGGGCAGAAGCTGCCCTGCCAGGGCCAACGGTCCCAGGAAGGAGTC
TGGAGTCCTAATGAGGAGCCCCGCACCAGCTCTGCCCACCCACATGGCGTAGTGTCTGGCATCT
TGCTAAGCAGCAGCTGTCCCCAGCTCCAGAGGACCCCACAGGATGCACGGACGGACGAGTAGGC
GTTTGTGATCGACTGTGCCCCTGCAGCAGGAGGCTCGATCTCCAGGAGAAAGGACCAGCACCTC
TGATGAGAAGCAGCAGTCCAGACGCTATGGAGAAAGTCTTGGTTTCTGCAACCCTGACGCCAGC
GGAGATCACTGAGATTATTGGGTTTTTTTCTGGCCTTCAGTCATTCTCTTTTCCCCTGGCCAAG
GAGTTGGGCCAGGACGGCCTGCAAGTGTGATGAGGACTCGTGCATGGGATGCAGGCCTCCTAAA
GCCCGTGTGTTCTCTGCTGTAATCAGGGTTCCAGGGATTCCCCACTGCAGGGGAGGAGGGGCTG
CCTTAGTGTCTGCTCATGAGCCACAAGGACCCAGACTGCTCCAGACTGGACCTTTTCAAGCCAC
CAAAGAGGGGGGTCCCCGGAGCTGGCAGCCAGCACTCACAAGGGACTAGAGGGCTGGGATGGAC
TGACCTCTGCCTTGACGGGGCGGCAGAAGGCGCAGAACCTTTGTGGCCCAGCTAGTGACTGAGA
GACCCGATGAAGTTCTGAGCAGAGGCTCTAGTGGCTCAGGGACCGGGGGGAGGGAGGGAGGCCA
TTCCTGCTTTCTCCTTTTGTCGAGGGAAGGTGTGGCAAGAGTCCCCTGCCACACCTCGTGCCCC
TATGCCCTTTCCACGTGCTGCCCAAACCAGCAGACTGCACCGTGGCTGGCCCCACAGTGGGCTG
GGAAAGGATTGGCCACGGTGACAGCCGCCCCGTGGCCAGCACAATGAAGTGCTCCCTTCGAGTG
TGGTTCCTCTCTATGGCCTTCCTGCTGGTGTTCATTATGTCTCTGCTCTTCACGTACTCACACC
ACAGCATGGCTACCTTGCCCTACCTGGACTCGGGGACTCTGGGCGGAACACACCGAGTGAAGCT
GGTACCGGGCTATACTGGGCAACAGCGCCTTGTCAAGGAGGGGCTTTCGGGGAAAAGTTGTACC
TGCAGTCGCTGCATGGGTGATGCCGGCACCTCTGAGTGGTTTGACAGCCACTTTGACAGTAACA
TCTCACCTGTCTGGACGAGAGATAACATGAACCTCACCCCGGATGTCCAGCGGTGGTGGATGAT
GCTGCAACCCCAATTCAAGTCACACAACACCAATGAAGTGTTGGAGAAGCTCTTCCAGATCGTG
CCCGGTGAGAACCCCTACCGCTTCCGGGACCCCCAGCAGTGCCGGCGCTGTGCTGTGGTCGGGA
ACTCAGGCAACCTTCGGGGCTCTGGCTATGGGCAAGAAGTGGACAGCCACAACTTTATCATGAG
GATGAATCAGGCACCGACTGTAGGCTTTGAGAAGGATGTTGGCAGCCGAACAACTCACCATTTC
ATGTACCCGGAGAGTGCCAAGAACCTGCCTGCCAACGTGAGCTTTGTGCTGGTGCCCTTCAAGG
CCCTGGACCTGATGTGGATTGCCAGCGCCCTCTCCACAGGACAGATCCGATTCACCTATGCTCC
AGTGAAGTCCTTCCTTCGAGTGGACAAAGAGAAGGTCCAGATTTACAACCCAGCCTTCTTCAAG
TACATCCATGACAGGTGGACCGAGCACCATGGCCGCTACCCCTCCACAGGAATGCTGGTGCTCT
TCTTTGCACTACACGTGTGTGATGAGGTGAACGTGTATGGGTTCGGGGCCGACAGCCGTGGCAA
CTGGCACCACTACTGGGAGAACAACCGGTACGCGGGCGAGTTCCGGAAGACAGGCGTGCATGAT
GCCGACTTCGAAGCCCACATCATTGACATGCTGGCCAAGGCCAGCAAGATTGAAGTCTACCGAG
GGAACTGAGCAGCCTCAGGCGCCTTCAGAACCAGTCACTTCAGGGTCTGGCAAGCGCCGGTTGC
CGCCCACCAATCAGACTGCGCCGTCCCCAGCAACCAATCAGTGCTGCAGTTGGGAGGAGCTTCT
TTCTTAGCCAATCACACAACTCAAGGAGAACTTCCGGCGCCGCCGTCTCCACCAATCATGGCCT
TGGGAGGCGGCGGGCCTGGACCCCCTCCCCCAACCCCCAACCCCGCTTTGGATGAGAATTTTTC
TGCTTTTTAAGAGGCCGGTCTGGGTCTGGGAGGGAGCACCTTGAACTGCTCATTTCCAGCTTAG
TCCCGATGGGTGAGTGAAGCCCGCCAAAGAAATGTGGTCCCGGCGAGATACTTTCCAGGGCATT
CTGTGGCTCACCAGCTAGTAGGGGGTTGTATTCACTCCCTAGTTGGGTTGACCTCCCTAGGGCC
TCATTAGTGTCAGGAACGGGTAGGAAGCTCCACCGGGTCACATGCAAGGTGCTTCTCTCACGTG
TGCCCTCACTCCTGTTCCCCACCACCTTCTCAGCGTCTGTCCTTAGGTCCTGGGTCTCCTCTCC
AGCTCACCTGTTGATTTGGAGACAAAATGAGACCACCGGGACTCCGCTGCTTGTGCTCTCACAC
ACGCGGCCCAAGTCTTTAGCCCTAAGGCGAGAGCAGCAGGGTTGGACAGTAGGCTGGAAAGGAG
TGCCCTGTGCATGTATCTTTTTCTTTCATTGTCACCCCAAAGAGGAGCAGGCAGCCTCTTGCTT
GGGTGTTGGATTTGCTTTGGATTCATACTTTAGTTACCCTCCAGCTGCCAGGGATGGCTATCCA
ACCAAGATCGCTTGACAGTTGTTTGCAGGCCTTGCAGATGGCTCGGAGCTTTGCTGGGGAGGAG
CAGATTGGTATCTGCCATGCATGGCTCCTCCTGTCCGCCCCTTTACCATGCTTACTCGCCTGTT
CTAACCTACTTTCCAGCTCCTAAAGGGCTGGTGAGTCAAGAATCGGGTTACAACTGGAAGCTAT
TTGCATGACTTGACCCAGGTCAAAGTTGAGGTTCATTTGGGAGAAAGGGCTTCAGTGAATGCCT
CAGGCCCCAGAAAACACTTCCCTTCAGTGTCCACATAATAATTTCCCATTCTTAATGAGTTGAC
ATTAACAAGCAGCTTCCTGGTTGGGGGACAGTCACACGTAAGGAGTGTGTTAAAGTTTGGTATG
AGGCAAATACCCCTAAAAACTAATATATGAAGAACTTTGCTTGAATTTGTTCCTTCCAAGTTTC
AAAAGCAGGGGTAGAGAAAAAGGGAGTATACCGAGAAGGGCTGTAGCGGAACCTCTCAGGGCTC
TAATCATCGTGCAGTCACTGTACCAGTGGCCGTTCTTGCCTGTCTCCGCTCTCCCAAGAAGCTG
CTGTGATGAGAAGTGGGAAAGTACTGCGATTACGACAAACAGTATTGAGAAGAAGAATTTATTT
TTCCTCCTTTTGTTTTGCTTAAACCATGAGTCACCATTCTAGAAAAGGTAGGTCCCAGCACCCA
CATCCTTTTTCTTCTACAGTTATTTAAACATTCAATTTTTCCCTCTGTTTCTTTTCCTGAATTA
AAAAGAACGAAGTCCATAGAGTTACTCATCTGTTCTGAACTGTACCCCTCATAGGTGATTCTGA
GGAGGTAAAGATGTTTGGGGGAACAAGGCAACTCTGATAACCTCTTACACCTGAGAAGCCTTTT
CATGGGCTCTGCACTCCGAAGTCCCCCCACAGAGGGCTGAGTATTATGGTTTAGAAAAATCAAT
TTATTATGCCAGGCATGGTGGTATGTGCCTTTAATCCTAGCAGTTAGGAGTCTGCAGCAGGAAA
GTAAGTTAAAGGCTAGCCTCAGCTATATGGTAACTTTCAAACTAACCTGGGCTATATGAGACCC
TTTCTCAAGGGGAAAAAAGGGAACAAAAAAAAAAAAATCCATTGTCCCCTCTTCAGATTCCTCT
AAAAGAGTAATGCCTTGGGAAGAATTTCTGGTTCACCTGAAATGGCCTTTTGTAAATACAGGGT
CTTTATTACAGACTCATGTTGGTTTATCTCAGCACCCATAAAGCGGTCCTCTTCCTGTGACTCT
ATGGTGAGTTTTCTCAGGGGTTTTGACATTTTTCTGCTGACTCCATCCATACTACATGTGGCCA
ACAGCTTGTTGACAGTACAACAAGGTGCTGTGCAAATGAACAGTTCTCTGGGACAGCTGCTGGG
GGCAGATAGTACCTATCTCAGCTTGCCTATCACGAAGATGAATGCTTAAACCTCGGTAGAGTAC
CTGGAAAACCGGGGCAAATGTTGGGTCTGCACCTTAAACCACTCACTAAAATAGGTGTCTCTCA
GAACTAAATTTCAAACCCCTACAGGTGGTAACTTTTTTTTTTTTTTCAATTTAAGAGAGTTCCT
CTGTGTAGCCCTGATTGTCCTGGGTCTCTCTGCAGACCAGGCTGTCCTCAAGTTCAGAAATCCT
CCTGCCTCTGCCTCCCACAGGTTGGGATTACAGATGTTCATTGTCACTGTCCAGATTACTTTTT
TTCCAGTTGTTATGACTCATTCCTACAGTCTGAGGGAGGTTGAGGAGGCATGCTAAATTTGTTT
TGCTTTTCTGAGAGGCTCTCCTGTACCTAGGCTCTGTAGACCAGGTTGGTCTCATTCCTAAGAG
TTCCGTCAGCTTTGTCTCCTGAGTTCAGGAACTAAAGACATGTGCCACCACTGCCCTGTGAGGG
GACTTGCTATTTAACTAAAAACAAAGACGCTTCCTTGATAACCTGGGCCATGGGGTTTTGCCCT
GTGGTTGTTTAACTCTTCTGTGATGGTTTCTGAAACTGGGGCAGGAAGACTGTTCTGTTAAAAT
AGGACAAATGTGGAGGCTGCATTAGAGTTTTATGTACAGAGACAGGACCTATCAGGACTGACAC
TAGGGTAGCTGGGTAGAATCAGCTATGATCTGGATGAGCCATTTTGCACCATTCCTAGTCCACA
GACTATCTGCCTTGTGATTTCTATTTTGCTTTTTTGGGACAGGGTTTCTCTTTGCAGACCAGGC
TGGCCTCAAACCCAGAGATCTGTCTTCCTCTGCTTTGGCAGTGCTGGAGTGTGCCACCAGCACC
CCACTATCTGCCCTCTTCCCTTTTTTAACTTTACATGTGTTGGTGTTTTGCCTGAGTATGTGTC
AGATCCCCTGAAACCCGAGTTACAGTTCTGGGTTGTCCTGTAAGTGCTGGGACTTGATCCTGGA
TCCGCTGGAAGGGCAGCTACTGGTGTCAACTGCTGAGCTTTCTATCCAGTCCTTTCTGCCTTGT
TTTTAAGACGATATGTTCTTCA

hide sequence

RefSeq Acc Id:

XM_006255627 ⟹ XP_006255689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,799,441 - 55,848,734 (+)	NCBI
mRatBN7.2	19	38,890,065 - 38,939,874 (+)	NCBI
Rnor_6.0	19	43,273,251 - 43,324,265 (-)	NCBI
Rnor_5.0	19	54,101,504 - 54,152,583 (-)	NCBI

Sequence:

show sequence

CCTTTAGCTGGGCAGGGGTGGGGGGAGGGGCCGGGCTGAGCTGCAGCCGCGGCGCTCCGGGAGG
GCAGGGCCAGGCAAGGGCGGGACTGGCCTGAGGCAGGCGGACAGGAGAGCCGAGAAGCTAACGG
GTCCGGGCGCGGGAGGCGGCGGCGGCGGTGGTGGCGGCGGCGGCAGCTTTCTGCACGGGTGGAG
GCGGCGGCAGGAGCGGCAAGCATGGCCCGCGCGGCGCCCAGCGCAGACTGAGGGTCATGCTGTG
GCAGCCTGGCGCCTGACAGGTGTGGAAAAGCCTGCCAGGGGATCACTGCTGGGAGGAGCCAAGG
ACAGGACAGCCTCACCCCAGAAGCAGGGGTGGGCAGAAGCTGCCCTGCCAGGGCCAACGGTCCC
AGGAAGGAGTCTGGAGTCCTAATGAGGAGCCCCGCACCAGCTCTGCCCACCCACATGGCGTAGT
GTCTGGCATCTTGCTAAGCAGCAGCTGTCCCCAGCTCCAGAGGACCCCACAGGATGCACGGACG
GACGAGTAGGCGTTTGTGATCGACTGTGCCCCTGCAGCAGGAGGCTCGATCTCCAGGAGAAAGG
ACCAGCACCTCTGATGAGAAGCAGCAGTCCAGACGCTATGGAGAAAGTCTTGGTTTCTGCAACC
CTGACGCCAGCGGAGATCACTGAGATTATTGGGTTTTTTTCTGGCCTTCAGTCATTCTCTTTTC
CCCTGGCCAAGGAGTTGGGCCAGGACGGCCTGCAAGTGTGATGAGGACTCGTGCATGGGATGCA
GGCCTCCTAAAGCCCGTGTGTTCTCTGCTGTAATCAGGGTTCCAGGGATTCCCCACTGCAGGGG
AGGAGGGGCTGCCTTAGTGTCTGCTCATGAGCCACAAGGACCCAGACTGCTCCAGACTGGACCT
TTTCAAGCCACCAAAGAGGGGGGTCCCCGGAGCTGGCAGCCAGCACTCACAAGGGACTAGAGGG
CTGGGATGGACTGACCTCTGCCTTGACGGGGCGGCAGAAGGCGCAGAACCTTTGTGGCCCAGCT
AGTGACTGAGAGACCCGATGAAGTTCTGAGCAGAGGCTCTAGTGGCTCAGGGACCGGGGGGAGG
GAGGGAGGCCATTCCTGCTTTCTCCTTTTGTCGAGGGAAGGTGTGGCAAGAGTCCCCTGCCACA
CCTCGTGCCCCTATGCCCTTTCCACGTGCTGCCCAAACCAGCAGACTGCACCGTGGCTGGCCCC
ACAGTGGGCTGGGAAAGGATTGGCCACGGTGACAGCCGCCCCGTGGCCAGCACAATGAAGTGCT
CCCTTCGAGTGTGGTTCCTCTCTATGGCCTTCCTGCTGGTGTTCATTATGTCTCTGCTCTTCAC
GTACTCACACCACAGCATGGCTACCTTGCCCTACCTGGACTCGGGGACTCTGGGCGGAACACAC
CGAGTGAAGCTGGTACCGGGCTATACTGGGCAACAGCGCCTTGTCAAGGAGGGGCTTTCGGGGA
AAAGTTGTACCTGCAGTCGCTGCATGGGTGATGCCGGCACCTCTGAGTGGTTTGACAGCCACTT
TGACAGTAACATCTCACCTGTCTGGACGAGAGATAACATGAACCTCACCCCGGATGTCCAGCGG
TGGTGGATGATGCTGCAACCCCAATTCAAGTCACACAACACCAATGAAGTGTTGGAGAAGCTCT
TCCAGATCGTGCCCGGTGAGAACCCCTACCGCTTCCGGGACCCCCAGCAGTGCCGGCGCTGTGC
TGTGGTCGGGAACTCAGGCAACCTTCGGGGCTCTGGCTATGGGCAAGAAGTGGACAGCCACAAC
TTTATCATGAGGATGAATCAGGCACCGACTGTAGGCTTTGAGAAGGATGTTGGCAGCCGAACAA
CTCACCATTTCATGTACCCGGAGAGTGCCAAGAACCTGCCTGCCAACGTGAGCTTTGTGCTGGT
GCCCTTCAAGGCCCTGGACCTGATGTGGATTGCCAGCGCCCTCTCCACAGGACAGATCCGATTC
ACCTATGCTCCAGTGAAGTCCTTCCTTCGAGTGGACAAAGAGAAGGTCCAGATTTACAACCCAG
CCTTCTTCAAGTACATCCATGACAGGTGGACCGAGCACCATGGCCGCTACCCCTCCACAGGAAT
GCTGGTGCTCTTCTTTGCACTACACGTGTGTGATGAGGTGAACGTGTATGGGTTCGGGGCCGAC
AGCCGTGGCAACTGGCACCACTACTGGGAGAACAACCGGTACGCGGGCGAGTTCCGGAAGACAG
GCGTGCATGATGCCGACTTCGAAGCCCACATCATTGACATGCTGGCCAAGGCCAGCAAGATTGA
AGTCTACCGAGGGAACTGAGCAGCCTCAGGCGCCTTCAGAACCAGTCACTTCAGGGTCTGGCAA
GCGCCGGTTGCCGCCCACCAATCAGACTGCGCCGTCCCCAGCAACCAATCAGTGCTGCAGTTGG
GAGGAGCTTCTTTCTTAGCCAATCACACAACTCAAGGAGAACTTCCGGCGCCGCCGTCTCCACC
AATCATGGCCTTGGGAGGCGGCGGGCCTGGACCCCCTCCCCCAACCCCCAACCCCGCTTTGGAT
GAGAATTTTTCTGCTTTTTAAGAGGCCGGTCTGGGTCTGGGAGGGAGCACCTTGAACTGCTCAT
TTCCAGCTTAGTCCCGATGGGTGAGTGAAGCCCGCCAAAGAAATGTGGTCCCGGCGAGATACTT
TCCAGGGCATTCTGTGGCTCACCAGCTAGTAGGGGGTTGTATTCACTCCCTAGTTGGGTTGACC
TCCCTAGGGCCTCATTAGTGTCAGGAACGGGTAGGAAGCTCCACCGGGTCACATGCAAGGTGCT
TCTCTCACGTGTGCCCTCACTCCTGTTCCCCACCACCTTCTCAGCGTCTGTCCTTAGGTCCTGG
GTCTCCTCTCCAGCTCACCTGTTGATTTGGAGACAAAATGAGACCACCGGGACTCCGCTGCTTG
TGCTCTCACACACGCGGCCCAAGTCTTTAGCCCTAAGGCGAGAGCAGCAGGGTTGGACAGTAGG
CTGGAAAGGAGTGCCCTGTGCATGTATCTTTTTCTTTCATTGTCACCCCAAAGAGGAGCAGGCA
GCCTCTTGCTTGGGTGTTGGATTTGCTTTGGATTCATACTTTAGTTACCCTCCAGCTGCCAGGG
ATGGCTATCCAACCAAGATCGCTTGACAGTTGTTTGCAGGCCTTGCAGATGGCTCGGAGCTTTG
CTGGGGAGGAGCAGATTGGTATCTGCCATGCATGGCTCCTCCTGTCCGCCCCTTTACCATGCTT
ACTCGCCTGTTCTAACCTACTTTCCAGCTCCTAAAGGGCTGGTGAGTCAAGAATCGGGTTACAA
CTGGAAGCTATTTGCATGACTTGACCCAGGTCAAAGTTGAGGTTCATTTGGGAGAAAGGGCTTC
AGTGAATGCCTCAGGCCCCAGAAAACACTTCCCTTCAGTGTCCACATAATAATTTCCCATTCTT
AATGAGTTGACATTAACAAGCAGCTTCCTGGTTGGGGGACAGTCACACGTAAGGAGTGTGTTAA
AGTTTGGTATGAGGCAAATACCCCTAAAAACTAATATATGAAGAACTTTGCTTGAATTTGTTCC
TTCCAAGTTTCAAAAGCAGGGGTAGAGAAAAAGGGAGTATACCGAGAAGGGCTGTAGCGGAACC
TCTCAGGGCTCTAATCATCGTGCAGTCACTGTACCAGTGGCCGTTCTTGCCTGTCTCCGCTCTC
CCAAGAAGCTGCTGTGATGAGAAGTGGGAAAGTACTGCGATTACGACAAACAGTATTGAGAAGA
AGAATTTATTTTTCCTCCTTTTGTTTTGCTTAAACCATGAGTCACCATTCTAGAAAAGGTAGGT
CCCAGCACCCACATCCTTTTTCTTCTACAGTTATTTAAACATTCAATTTTTCCCTCTGTTTCTT
TTCCTGAATTAAAAAGAACGAAGTCCATAGAGTTACTCATCTGTTCTGAACTGTACCCCTCATA
GGTGATTCTGAGGAGGTAAAGATGTTTGGGGGAACAAGGCAACTCTGATAACCTCTTACACCTG
AGAAGCCTTTTCATGGGCTCTGCACTCCGAAGTCCCCCCACAGAGGGCTGAGTATTATGGTTTA
GAAAAATCAATTTATTATGCCAGGCATGGTGGTATGTGCCTTTAATCCTAGCAGTTAGGAGTCT
GCAGCAGGAAAGTAAGTTAAAGGCTAGCCTCAGCTATATGGTAACTTTCAAACTAACCTGGGCT
ATATGAGACCCTTTCTCAAGGGGAAAAAAGGGAACAAAAAAAAAAAAATCCATTGTCCCCTCTT
CAGATTCCTCTAAAAGAGTAATGCCTTGGGAAGAATTTCTGGTTCACCTGAAATGGCCTTTTGT
AAATACAGGGTCTTTATTACAGACTCATGTTGGTTTATCTCAGCACCCATAAAGCGGTCCTCTT
CCTGTGACTCTATGGTGAGTTTTCTCAGGGGTTTTGACATTTTTCTGCTGACTCCATCCATACT
ACATGTGGCCAACAGCTTGTTGACAGTACAACAAGGTGCTGTGCAAATGAACAGTTCTCTGGGA
CAGCTGCTGGGGGCAGATAGTACCTATCTCAGCTTGCCTATCACGAAGATGAATGCTTAAACCT
CGGTAGAGTACCTGGAAAACCGGGGCAAATGTTGGGTCTGCACCTTAAACCACTCACTAAAATA
GGTGTCTCTCAGAACTAAATTTCAAACCCCTACAGGTGGTAACTTTTTTTTTTTTTTCAATTTA
AGAGAGTTCCTCTGTGTAGCCCTGATTGTCCTGGGTCTCTCTGCAGACCAGGCTGTCCTCAAGT
TCAGAAATCCTCCTGCCTCTGCCTCCCACAGGTTGGGATTACAGATGTTCATTGTCACTGTCCA
GATTACTTTTTTTCCAGTTGTTATGACTCATTCCTACAGTCTGAGGGAGGTTGAGGAGGCATGC
TAAATTTGTTTTGCTTTTCTGAGAGGCTCTCCTGTACCTAGGCTCTGTAGACCAGGTTGGTCTC
ATTCCTAAGAGTTCCGTCAGCTTTGTCTCCTGAGTTCAGGAACTAAAGACATGTGCCACCACTG
CCCTGTGAGGGGACTTGCTATTTAACTAAAAACAAAGACGCTTCCTTGATAACCTGGGCCATGG
GGTTTTGCCCTGTGGTTGTTTAACTCTTCTGTGATGGTTTCTGAAACTGGGGCAGGAAGACTGT
TCTGTTAAAATAGGACAAATGTGGAGGCTGCATTAGAGTTTTATGTACAGAGACAGGACCTATC
AGGACTGACACTAGGGTAGCTGGGTAGAATCAGCTATGATCTGGATGAGCCATTTTGCACCATT
CCTAGTCCACAGACTATCTGCCTTGTGATTTCTATTTTGCTTTTTTGGGACAGGGTTTCTCTTT
GCAGACCAGGCTGGCCTCAAACCCAGAGATCTGTCTTCCTCTGCTTTGGCAGTGCTGGAGTGTG
CCACCAGCACCCCACTATCTGCCCTCTTCCCTTTTTTAACTTTACATGTGTTGGTGTTTTGCCT
GAGTATGTGTCAGATCCCCTGAAACCCGAGTTACAGTTCTGGGTTGTCCTGTAAGTGCTGGGAC
TTGATCCTGGATCCGCTGGAAGGGCAGCTACTGGTGTCAACTGCTGAGCTTTCTATCCAGTCCT
TTCTGCCTTGTTTTTAAGACGATATGTTCTTCA

hide sequence

RefSeq Acc Id:

XM_039097961 ⟹ XP_038953889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,798,112 - 55,848,734 (+)	NCBI
mRatBN7.2	19	38,888,851 - 38,939,874 (+)	NCBI

RefSeq Acc Id:

XM_039097962 ⟹ XP_038953890

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,833,623 - 55,848,734 (+)	NCBI
mRatBN7.2	19	38,924,274 - 38,939,874 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_113883	(Get FASTA)	NCBI Sequence Viewer
	XP_006255687	(Get FASTA)	NCBI Sequence Viewer
	XP_006255688	(Get FASTA)	NCBI Sequence Viewer
	XP_006255689	(Get FASTA)	NCBI Sequence Viewer
	XP_038953889	(Get FASTA)	NCBI Sequence Viewer
	XP_038953890	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAA54293	(Get FASTA)	NCBI Sequence Viewer
	EDL92552	(Get FASTA)	NCBI Sequence Viewer
	EDL92553	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024248
GenBank Protein	Q11205	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_113883 ⟸ NM_031695

- UniProtKB:

Q11205 (UniProtKB/Swiss-Prot), G3V8B2 (UniProtKB/TrEMBL), A6IZ75 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKCSLRVWFLSMAFLLVFIMSLLFTYSHHSMATLPYLDSGTLGGTHRVKLVPGYTGQQRLVKEG
LSGKSCTCSRCMGDAGTSEWFDSHFDSNISPVWTRDNMNLTPDVQRWWMMLQPQFKSHNTNEVL
EKLFQIVPGENPYRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPTVGFEKDVG
SRTTHHFMYPESAKNLPANVSFVLVPFKALDLMWIASALSTGQIRFTYAPVKSFLRVDKEKVQI
YNPAFFKYIHDRWTEHHGRYPSTGMLVLFFALHVCDEVNVYGFGADSRGNWHHYWENNRYAGEF
RKTGVHDADFEAHIIDMLAKASKIEVYRGN

hide sequence

RefSeq Acc Id:	XP_006255689 ⟸ XM_006255627
- Peptide Label:	isoform X1
- UniProtKB:	Q11205 (UniProtKB/Swiss-Prot), G3V8B2 (UniProtKB/TrEMBL), A6IZ75 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKCSLRVWFLSMAFLLVFIMSLLFTYSHHSMATLPYLDSGTLGGTHRVKLVPGYTGQQRLVKEG LSGKSCTCSRCMGDAGTSEWFDSHFDSNISPVWTRDNMNLTPDVQRWWMMLQPQFKSHNTNEVL EKLFQIVPGENPYRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPTVGFEKDVG SRTTHHFMYPESAKNLPANVSFVLVPFKALDLMWIASALSTGQIRFTYAPVKSFLRVDKEKVQI YNPAFFKYIHDRWTEHHGRYPSTGMLVLFFALHVCDEVNVYGFGADSRGNWHHYWENNRYAGEF RKTGVHDADFEAHIIDMLAKASKIEVYRGN hide sequence

RefSeq Acc Id:	XP_006255687 ⟸ XM_006255625
- Peptide Label:	isoform X1
- UniProtKB:	Q11205 (UniProtKB/Swiss-Prot), G3V8B2 (UniProtKB/TrEMBL), A6IZ75 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKCSLRVWFLSMAFLLVFIMSLLFTYSHHSMATLPYLDSGTLGGTHRVKLVPGYTGQQRLVKEG LSGKSCTCSRCMGDAGTSEWFDSHFDSNISPVWTRDNMNLTPDVQRWWMMLQPQFKSHNTNEVL EKLFQIVPGENPYRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPTVGFEKDVG SRTTHHFMYPESAKNLPANVSFVLVPFKALDLMWIASALSTGQIRFTYAPVKSFLRVDKEKVQI YNPAFFKYIHDRWTEHHGRYPSTGMLVLFFALHVCDEVNVYGFGADSRGNWHHYWENNRYAGEF RKTGVHDADFEAHIIDMLAKASKIEVYRGN hide sequence

RefSeq Acc Id:	XP_006255688 ⟸ XM_006255626
- Peptide Label:	isoform X1
- UniProtKB:	Q11205 (UniProtKB/Swiss-Prot), G3V8B2 (UniProtKB/TrEMBL), A6IZ75 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKCSLRVWFLSMAFLLVFIMSLLFTYSHHSMATLPYLDSGTLGGTHRVKLVPGYTGQQRLVKEG LSGKSCTCSRCMGDAGTSEWFDSHFDSNISPVWTRDNMNLTPDVQRWWMMLQPQFKSHNTNEVL EKLFQIVPGENPYRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPTVGFEKDVG SRTTHHFMYPESAKNLPANVSFVLVPFKALDLMWIASALSTGQIRFTYAPVKSFLRVDKEKVQI YNPAFFKYIHDRWTEHHGRYPSTGMLVLFFALHVCDEVNVYGFGADSRGNWHHYWENNRYAGEF RKTGVHDADFEAHIIDMLAKASKIEVYRGN hide sequence

Ensembl Acc Id:

ENSRNOP00000024248 ⟸ ENSRNOT00000024248

RefSeq Acc Id:	XP_038953889 ⟸ XM_039097961
- Peptide Label:	isoform X1
- UniProtKB:	Q11205 (UniProtKB/Swiss-Prot), G3V8B2 (UniProtKB/TrEMBL), A6IZ75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953890 ⟸ XM_039097962
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q11205-F1-model_v2	AlphaFold	Q11205	1-350	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68413	AgrOrtholog
BioCyc Gene	G2FUF-5671	BioCyc
BioCyc Pathway	PWY-7433 [mucin core 1 and core 2 O-glycosylation]	BioCyc
BioCyc Pathway Image	PWY-7433	BioCyc
Ensembl Genes	ENSRNOG00000017932	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000024248	ENTREZGENE
Gene3D-CATH	3.90.1480.20	UniProtKB/Swiss-Prot
InterPro	Beta-gal_alpha2-3_sialyltrans	UniProtKB/Swiss-Prot
	Glyco_trans_29	UniProtKB/Swiss-Prot
	GT29-like_sf	UniProtKB/Swiss-Prot
	Sialyl_trans	UniProtKB/Swiss-Prot
KEGG Report	rno:64442	UniProtKB/Swiss-Prot
NCBI Gene	64442	ENTREZGENE
PANTHER	ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1	UniProtKB/Swiss-Prot
	CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE 2	UniProtKB/Swiss-Prot
Pfam	Glyco_transf_29	UniProtKB/Swiss-Prot
PhenoGen	St3gal2	PhenoGen
PIRSF	Sialyl_trans	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000017932	RatGTEx
TIGR	TC205044
UniProt	A6IZ75	ENTREZGENE, UniProtKB/TrEMBL
	G3V8B2	ENTREZGENE, UniProtKB/TrEMBL
	Q11205	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	St3gal2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	Siat4b	sialyltransferase 4B (beta-galactoside alpha-2,3-sialyltransferase)	Symbol and Name updated	1299863	APPROVED
2004-09-10	Siat4b	sialyltransferase 4B (beta-galactoside alpha-2,3-sialyltransferase)	Siat5	sialyltransferase 5	Symbol and Name updated	1299863	APPROVED
2002-06-10	Siat5	sialyltransferase 5			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	mainly expressed in brain and liver	68307
gene_protein	350 amino acids	68307

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Annotations - KEGG (archival)

BioCyc Pathways