Atp6v0a1 (ATPase H+ transporting V0 subunit a1) - Rat Genome Database

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Gene: Atp6v0a1 (ATPase H+ transporting V0 subunit a1) Rattus norvegicus
Analyze
Symbol: Atp6v0a1
Name: ATPase H+ transporting V0 subunit a1
RGD ID: 68405
Description: Predicted to enable ATPase binding activity. Predicted to be involved in regulation of macroautophagy; synaptic vesicle lumen acidification; and vacuolar acidification. Located in terminal bouton. Is active in synaptic vesicle membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 104. Orthologous to human ATP6V0A1 (ATPase H+ transporting V0 subunit a1); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Atp6n1; Atp6n1a; ATPase H+ transporting lysosomal (vacuolar proton pump) noncatalytic accessory protein 1 (110/160 kDa); ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1A (110/116kD); ATPase, H+ transporting, lysosomal (vacuolar proton pump) noncatalytic accessory protein 1 (110/160 kDa); ATPase, H+ transporting, lysosomal noncatalytic accessory protein 1a; ATPase, H+ transporting, lysosomal V0 subunit a; ATPase, H+ transporting, lysosomal V0 subunit a isoform 1; ATPase, H+ transporting, lysosomal V0 subunit A1; clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit; V-ATPase 116 kDa; V-ATPase 116 kDa subunit a 1; V-ATPase 116 kDa subunit a1; v-H+ATPase subunit a1; V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a 1; V-type proton ATPase 116 kDa subunit a isoform 1; V-type proton ATPase 116 kDa subunit a1; vacuolar adenosine triphosphatase subunit Ac116; vacuolar proton pump subunit 1; vacuolar proton translocating ATPase 116 kDa subunit a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,436,089 - 86,490,185 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1086,436,141 - 86,490,181 (+)EnsemblGRCr8
mRatBN7.21085,935,802 - 85,989,901 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,935,854 - 85,989,895 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1090,972,230 - 91,026,335 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,450,858 - 90,505,156 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,844,028 - 85,898,326 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,914,264 - 88,967,736 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,914,276 - 88,967,748 (+)Ensemblrn6Rnor6.0
Rnor_5.01088,710,520 - 88,766,232 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41089,948,286 - 90,072,304 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1084,654,189 - 84,707,639 (+)NCBICelera
RGSC_v3.11089,964,972 - 90,086,670 (+)NCBI
Cytogenetic Map10q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (EXP)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chrysene  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
ethanol  (ISO)
eugenol  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
indometacin  (EXP,ISO)
isoniazide  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
Maduramicin  (EXP)
methamphetamine  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
nitrates  (ISO)
osimertinib  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
rifampicin  (ISO)
rotenone  (ISO)
selenomethionine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulindac sulfide  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
thapsigargin  (EXP,ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
vinclozolin  (EXP)
Yessotoxin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structure of V-ATPase from the mammalian brain. Abbas YM, etal., Science. 2020 Mar 13;367(6483):1240-1246. doi: 10.1126/science.aaz2924.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Structure of the 116-kDa polypeptide of the clathrin-coated vesicle/synaptic vesicle proton pump. Perin MS, etal., J Biol Chem 1991 Feb 25;266(6):3877-81.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Molecular anatomy of a trafficking organelle. Takamori S, etal., Cell. 2006 Nov 17;127(4):831-46.
12. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
13. Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins. Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
Additional References at PubMed
PMID:10722719   PMID:12672822   PMID:15935991   PMID:16621796   PMID:17228368   PMID:17360703   PMID:19056867   PMID:19549681   PMID:20147366   PMID:21700703   PMID:21795392   PMID:22871113  
PMID:22982048   PMID:23376485   PMID:23533145   PMID:23716698   PMID:24165939   PMID:25002582   PMID:27323115   PMID:28131823   PMID:29476059   PMID:32357304   PMID:36232740  


Genomics

Comparative Map Data
Atp6v0a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,436,089 - 86,490,185 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1086,436,141 - 86,490,181 (+)EnsemblGRCr8
mRatBN7.21085,935,802 - 85,989,901 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,935,854 - 85,989,895 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1090,972,230 - 91,026,335 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,450,858 - 90,505,156 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,844,028 - 85,898,326 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,914,264 - 88,967,736 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,914,276 - 88,967,748 (+)Ensemblrn6Rnor6.0
Rnor_5.01088,710,520 - 88,766,232 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41089,948,286 - 90,072,304 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1084,654,189 - 84,707,639 (+)NCBICelera
RGSC_v3.11089,964,972 - 90,086,670 (+)NCBI
Cytogenetic Map10q31NCBI
ATP6V0A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,458,878 - 42,522,579 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,458,844 - 42,522,582 (+)Ensemblhg38GRCh38
GRCh371740,610,896 - 40,674,597 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,864,388 - 37,928,123 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1737,266,849 - 37,330,552 (+)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,375,995 - 36,439,547 (+)NCBIHuRef
CHM1_11740,846,745 - 40,910,459 (+)NCBICHM1_1
T2T-CHM13v2.01743,316,076 - 43,379,766 (+)NCBIT2T-CHM13v2.0
Atp6v0a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,899,262 - 100,954,545 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,900,278 - 100,954,545 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3811101,009,422 - 101,063,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,009,452 - 101,063,719 (+)Ensemblmm10GRCm38
MGSCv3711100,870,769 - 100,925,028 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611100,825,545 - 100,879,804 (+)NCBIMGSCv36mm8
Celera11112,305,579 - 112,359,857 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1164.04NCBI
Atp6v0a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,396,287 - 16,444,932 (+)Ensembl
ChiLan1.0NW_00495545116,396,287 - 16,442,596 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,351,790 - 24,415,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,793,717 - 14,857,706 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11715,017,692 - 15,082,491 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,017,695 - 15,082,470 (-)EnsemblpanPan2panpan1.1
ATP6V0A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,422,144 - 20,486,459 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,423,373 - 20,484,328 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha919,883,979 - 19,948,472 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0921,141,094 - 21,205,623 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,141,096 - 21,205,565 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,926,898 - 19,991,407 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,192,140 - 20,256,660 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,296,209 - 20,360,734 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atp6v0a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,778,545 - 19,839,467 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,235,661 - 17,296,633 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,235,661 - 17,296,589 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,288,411 - 20,344,127 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11220,288,409 - 20,344,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,501,313 - 20,557,073 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,754,523 - 63,818,537 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,753,521 - 63,816,551 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607734,550,133 - 34,614,224 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,560,995 - 1,608,067 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247951,561,104 - 1,607,693 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Atp6v0a1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1960,298,879 - 60,352,961 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Atp6v0a1
358 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:212
Count of miRNA genes:138
Interacting mature miRNAs:171
Transcripts:ENSRNOT00000055238
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105107189796071897Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)103550938391417879Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108101207791729860Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105429633699451733Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108306123692869129Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104183127886831278Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105046480295464802Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104552916496099749Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104493935989939359Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107674313395464802Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105086028895860288Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107395035396620293Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14282327487823274Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106724133498502431Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104493935989939359Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104282327487823274Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106184349698710773Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)107369533997272278Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1081012077101828297Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102293137391127454Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107304965694495280Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)104949549294495492Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)102980091091417879Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105530797293608131Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)1061843496100198886Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104360879388608793Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104994371094943710Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104493935989939359Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1061843496100198886Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104786912992869129Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108450348796432422Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107674313395604677Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108450348796432422Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105060467795604677Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)103550938388177745Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107395035396620293Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat

Markers in Region
RH132239  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21085,989,734 - 85,989,896 (+)MAPPERmRatBN7.2
Rnor_6.01088,967,570 - 88,967,731NCBIRnor6.0
Rnor_5.01088,766,066 - 88,766,227UniSTSRnor5.0
RGSC_v3.41090,072,138 - 90,072,299UniSTSRGSC3.4
Celera1084,707,473 - 84,707,634UniSTS
RH 3.4 Map10878.1UniSTS
Cytogenetic Map10q32.1UniSTS
RH132477  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,354,774 - 86,354,960 (+)MAPPERmRatBN7.2
Rnor_6.01089,332,124 - 89,332,309NCBIRnor6.0
Rnor_5.01089,130,148 - 89,130,333UniSTSRnor5.0
RGSC_v3.41090,016,481 - 90,016,666UniSTSRGSC3.4
Celera1085,072,259 - 85,072,444UniSTS
RH 3.4 Map10878.1UniSTS
Cytogenetic Map10q32UniSTS
Cytogenetic Map10q32.1UniSTS
RH144379  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,353,468 - 86,353,616 (+)MAPPERmRatBN7.2
Rnor_6.01089,330,818 - 89,330,965NCBIRnor6.0
Rnor_5.01089,128,842 - 89,128,989UniSTSRnor5.0
RGSC_v3.41090,015,175 - 90,015,322UniSTSRGSC3.4
Celera1085,070,953 - 85,071,100UniSTS
RH 3.4 Map10837.2UniSTS
Cytogenetic Map10q32UniSTS
Cytogenetic Map10q32.1UniSTS
BF412836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21085,960,708 - 85,960,821 (+)MAPPERmRatBN7.2
Rnor_6.01088,939,133 - 88,939,245NCBIRnor6.0
Rnor_5.01088,737,629 - 88,737,741UniSTSRnor5.0
Celera1084,678,483 - 84,678,595UniSTS
Cytogenetic Map10q32.1UniSTS
RH125015  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,347,284 - 86,347,365 (+)MAPPERmRatBN7.2
Rnor_6.01089,324,634 - 89,324,714NCBIRnor6.0
Rnor_5.01089,122,658 - 89,122,738UniSTSRnor5.0
RGSC_v3.41090,008,991 - 90,009,071UniSTSRGSC3.4
Celera1085,064,769 - 85,064,849UniSTS
Cytogenetic Map10q32UniSTS
Cytogenetic Map10q32.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB586356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB770675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB787072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO560122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ286421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ286422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ286423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ286424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M58758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000055238   ⟹   ENSRNOP00000052113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1088,914,295 - 88,967,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087076   ⟹   ENSRNOP00000071954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1086,436,141 - 86,490,179 (+)Ensembl
mRatBN7.2 Ensembl1085,935,854 - 85,989,895 (+)Ensembl
Rnor_6.0 Ensembl1088,914,276 - 88,967,732 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134551   ⟹   ENSRNOP00000109984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1086,436,183 - 86,490,181 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138459   ⟹   ENSRNOP00000102690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1086,436,192 - 86,490,179 (+)Ensembl
RefSeq Acc Id: NM_031604   ⟹   NP_113792
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,141 - 86,490,185 (+)NCBI
mRatBN7.21085,935,854 - 85,989,901 (+)NCBI
Rnor_6.01088,914,276 - 88,967,736 (+)NCBI
Rnor_5.01088,710,520 - 88,766,232 (+)NCBI
RGSC_v3.41089,948,286 - 90,072,304 (+)RGD
Celera1084,654,189 - 84,707,639 (+)RGD
Sequence:
RefSeq Acc Id: XM_006247295   ⟹   XP_006247357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Rnor_5.01088,710,520 - 88,766,232 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247296   ⟹   XP_006247358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Rnor_5.01088,710,520 - 88,766,232 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247297   ⟹   XP_006247359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,090 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Rnor_5.01088,710,520 - 88,766,232 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597194   ⟹   XP_017452683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597195   ⟹   XP_017452684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,107 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,268 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597196   ⟹   XP_017452685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597197   ⟹   XP_017452686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597199   ⟹   XP_017452688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,107 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,268 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597200   ⟹   XP_017452689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039085799   ⟹   XP_038941727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,538 - 86,490,185 (+)NCBI
mRatBN7.21085,936,251 - 85,989,901 (+)NCBI
RefSeq Acc Id: XM_039085801   ⟹   XP_038941729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,490,185 (+)NCBI
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
RefSeq Acc Id: XM_063268845   ⟹   XP_063124915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,107 - 86,490,185 (+)NCBI
RefSeq Acc Id: XM_063268846   ⟹   XP_063124916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,538 - 86,490,185 (+)NCBI
RefSeq Acc Id: XM_063268847   ⟹   XP_063124917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,107 - 86,490,185 (+)NCBI
RefSeq Acc Id: XM_063268848   ⟹   XP_063124918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,108 - 86,490,185 (+)NCBI
RefSeq Acc Id: XM_063268849   ⟹   XP_063124919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,519 - 86,490,185 (+)NCBI
RefSeq Acc Id: XM_063268850   ⟹   XP_063124920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,541 - 86,490,185 (+)NCBI
RefSeq Acc Id: XM_063268851   ⟹   XP_063124921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,108 - 86,490,185 (+)NCBI
RefSeq Acc Id: XM_063268853   ⟹   XP_063124923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,108 - 86,490,185 (+)NCBI
RefSeq Acc Id: XM_063268854   ⟹   XP_063124924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,482,297 (+)NCBI
RefSeq Acc Id: XR_005489782
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,436,089 - 86,482,297 (+)NCBI
mRatBN7.21085,935,802 - 85,982,011 (+)NCBI
Protein Sequences
Protein RefSeqs NP_113792 (Get FASTA)   NCBI Sequence Viewer  
  XP_006247357 (Get FASTA)   NCBI Sequence Viewer  
  XP_006247358 (Get FASTA)   NCBI Sequence Viewer  
  XP_006247359 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452683 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452684 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452685 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452686 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452688 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452689 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941727 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941729 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124915 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124916 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124917 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124918 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124919 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124920 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124921 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124923 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124924 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41962 (Get FASTA)   NCBI Sequence Viewer  
  ABB91440 (Get FASTA)   NCBI Sequence Viewer  
  ABB91441 (Get FASTA)   NCBI Sequence Viewer  
  ABB91442 (Get FASTA)   NCBI Sequence Viewer  
  ABB91443 (Get FASTA)   NCBI Sequence Viewer  
  EDM06071 (Get FASTA)   NCBI Sequence Viewer  
  EDM06072 (Get FASTA)   NCBI Sequence Viewer  
  EDM06073 (Get FASTA)   NCBI Sequence Viewer  
  EDM06074 (Get FASTA)   NCBI Sequence Viewer  
  EDM06075 (Get FASTA)   NCBI Sequence Viewer  
  EDM06076 (Get FASTA)   NCBI Sequence Viewer  
  EDM06077 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071954
  ENSRNOP00000102690
  ENSRNOP00000109984
GenBank Protein P25286 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113792   ⟸   NM_031604
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247357   ⟸   XM_006247295
- Peptide Label: isoform X4
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247358   ⟸   XM_006247296
- Peptide Label: isoform X5
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247359   ⟸   XM_006247297
- Peptide Label: isoform X7
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B2 (UniProtKB/TrEMBL),   D4ACY5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452683   ⟸   XM_017597194
- Peptide Label: isoform X1
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452685   ⟸   XM_017597196
- Peptide Label: isoform X2
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452689   ⟸   XM_017597200
- Peptide Label: isoform X8
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452686   ⟸   XM_017597197
- Peptide Label: isoform X3
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452684   ⟸   XM_017597195
- Peptide Label: isoform X1
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452688   ⟸   XM_017597199
- Peptide Label: isoform X3
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052113   ⟸   ENSRNOT00000055238
Ensembl Acc Id: ENSRNOP00000071954   ⟸   ENSRNOT00000087076
RefSeq Acc Id: XP_038941729   ⟸   XM_039085801
- Peptide Label: isoform X9
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038941727   ⟸   XM_039085799
- Peptide Label: isoform X1
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063124924   ⟸   XM_063268854
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063124915   ⟸   XM_063268845
- Peptide Label: isoform X4
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124917   ⟸   XM_063268847
- Peptide Label: isoform X5
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124918   ⟸   XM_063268848
- Peptide Label: isoform X6
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124921   ⟸   XM_063268851
- Peptide Label: isoform X7
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   D4ACY5 (UniProtKB/TrEMBL),   Q2I6B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124923   ⟸   XM_063268853
- Peptide Label: isoform X9
- UniProtKB: P25286 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063124919   ⟸   XM_063268849
- Peptide Label: isoform X6
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124916   ⟸   XM_063268846
- Peptide Label: isoform X4
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124920   ⟸   XM_063268850
- Peptide Label: isoform X6
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109984   ⟸   ENSRNOT00000134551
Ensembl Acc Id: ENSRNOP00000102690   ⟸   ENSRNOT00000138459

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P25286-F1-model_v2 AlphaFold P25286 1-838 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697738
Promoter ID:EPDNEW_R8262
Type:initiation region
Name:Atp6v0a1_1
Description:ATPase H+ transporting V0 subunit a1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01088,914,296 - 88,914,356EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68405 AgrOrtholog
BioCyc Gene G2FUF-23205 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000036814 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000087076 ENTREZGENE
  ENSRNOT00000134551 ENTREZGENE
  ENSRNOT00000138459 ENTREZGENE
InterPro V-ATPase_116kDa_su UniProtKB/Swiss-Prot
  V-type_ATPase_116kDa_su_euka UniProtKB/Swiss-Prot
KEGG Report rno:29757 UniProtKB/Swiss-Prot
NCBI Gene 29757 ENTREZGENE
PANTHER PTHR11629 UniProtKB/Swiss-Prot
  V-TYPE PROTON ATPASE 116 KDA SUBUNIT A1 UniProtKB/Swiss-Prot
Pfam V_ATPase_I UniProtKB/Swiss-Prot
PhenoGen Atp6v0a1 PhenoGen
PIRSF ATP6V0A1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000036814 RatGTEx
TIGR TC205492
UniProt A0ABK0LQM6_RAT UniProtKB/TrEMBL
  A0ABK0M1I2_RAT UniProtKB/TrEMBL
  A6HJ68_RAT UniProtKB/TrEMBL
  A6HJ69_RAT UniProtKB/TrEMBL
  A6HJ72_RAT UniProtKB/TrEMBL
  D4ACY5 ENTREZGENE
  P25286 ENTREZGENE
  Q2I6B2 ENTREZGENE, UniProtKB/TrEMBL
  Q2I6B3 ENTREZGENE, UniProtKB/TrEMBL
  Q2I6B4 ENTREZGENE, UniProtKB/TrEMBL
  Q2I6B5 ENTREZGENE, UniProtKB/TrEMBL
  VPP1_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp6v0a1  ATPase H+ transporting V0 subunit a1  Atp6v0a1  ATPase, H+ transporting, lysosomal V0 subunit A1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Atp6v0a1  ATPase, H+ transporting, lysosomal V0 subunit A1    ATPase, H+ transporting, lysosomal V0 subunit a isoform 1  Name updated 1299863 APPROVED
2004-09-10 Atp6v0a1  ATPase, H+ transporting, lysosomal V0 subunit a isoform 1  Atp6n1a  ATPase, H+ transporting, lysosomal noncatalytic accessory protein 1a  Symbol and Name updated 1299863 APPROVED
2002-06-10 Atp6n1a  ATPase, H+ transporting, lysosomal noncatalytic accessory protein 1a      Name updated 70584 APPROVED
2002-02-27 Atp6n1a  ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1A (110/116kD)      Symbol and Name updated to reflect Human and Mouse nomenclature 70292 APPROVED

RGD Curation Notes
Note Type Note Reference